RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 C6orf48Q9UBA6 75 aa5.87□□□□□ -1.47
VPS53-203ENST00000401468 CKS1BP61024 79 aa5.86□□□□□ -1.47
VPS53-203ENST00000401468 HERVK_113P61574 105 aa5.86□□□□□ -1.47
VPS53-203ENST00000401468 JOSD1Q15040 202 aaPredicted RBP5.86□□□□□ -1.47
VPS53-203ENST00000401468 TOMM7Q9P0U1 55 aa5.86□□□□□ -1.47
VPS53-203ENST00000401468 PKIGQ9Y2B9 76 aa5.86□□□□□ -1.47
VPS53-203ENST00000401468 J3QQQ9 107 aa5.85□□□□□ -1.47
VPS53-203ENST00000401468 NMUP48645 174 aa5.85□□□□□ -1.47
VPS53-203ENST00000401468 STPG4Q8N801 248 aa5.85□□□□□ -1.47
VPS53-203ENST00000401468 IGKV2D-26A0A0A0MRZ7 120 aa5.84□□□□□ -1.47
VPS53-203ENST00000401468 HERV-K104P63124 156 aa5.84□□□□□ -1.47
VPS53-203ENST00000401468 COX17Q14061 63 aa5.84□□□□□ -1.47
VPS53-203ENST00000401468 A0A096LNI7 61 aa5.83□□□□□ -1.48
VPS53-203ENST00000401468 LOC107984640A0A0U1RRK4 108 aa5.83□□□□□ -1.48
VPS53-203ENST00000401468 NDUFC2-KCTD14E9PQ53 114 aa5.83□□□□□ -1.48
VPS53-203ENST00000401468 PANO1I0J062 215 aa5.83□□□□□ -1.48
VPS53-203ENST00000401468 ATOH7Q8N100 152 aa5.83□□□□□ -1.48
VPS53-203ENST00000401468 NDUFA12Q9UI09 145 aa5.83□□□□□ -1.48
VPS53-203ENST00000401468 PKHD1L1Q86WI1 4243 aa5.82□□□□□ -1.48
VPS53-203ENST00000401468 MYMXA0A1B0GTQ4 84 aa5.82□□□□□ -1.48
VPS53-203ENST00000401468 SCGB1D1O95968 90 aa5.82□□□□□ -1.48
VPS53-203ENST00000401468 PTTG1IPP53801 180 aa5.82□□□□□ -1.48
VPS53-203ENST00000401468 MAJINQ3KP22 176 aa5.82□□□□□ -1.48
VPS53-203ENST00000401468 C9orf116Q5BN46 136 aaPredicted RBP5.82□□□□□ -1.48
VPS53-203ENST00000401468 PYY3Q5JQD4 70 aa5.82□□□□□ -1.48
VPS53-203ENST00000401468 Q6ZRP5 223 aa5.82□□□□□ -1.48
VPS53-203ENST00000401468 LINC00518Q8N0U6 118 aa5.82□□□□□ -1.48
VPS53-203ENST00000401468 CIRBP-AS1Q8TBR5 109 aa5.82□□□□□ -1.48
VPS53-203ENST00000401468 SPACA4Q8TDM5 124 aa5.82□□□□□ -1.48
VPS53-203ENST00000401468 KRTAP23-1A1A580 65 aa5.81□□□□□ -1.48
VPS53-203ENST00000401468 KRTAP9-8Q9BYQ0 159 aa5.81□□□□□ -1.48
VPS53-203ENST00000401468 LINC00474Q9P2X8 69 aa5.81□□□□□ -1.48
VPS53-203ENST00000401468 ERG28Q9UKR5 140 aa5.81□□□□□ -1.48
VPS53-203ENST00000401468 RNF213Q63HN8 5207 aa5.8□□□□□ -1.48
VPS53-203ENST00000401468 LINC00587B1AMM8 73 aa5.8□□□□□ -1.48
VPS53-203ENST00000401468 CHTF8P0CG12 524 aa5.8□□□□□ -1.48
VPS53-203ENST00000401468 LGALS3P17931 250 aaKnown RBP5.8□□□□□ -1.48
VPS53-203ENST00000401468 HNRNPA3P51991 378 aaKnown RBP5.8□□□□□ -1.48
VPS53-203ENST00000401468 LRP1Q07954 4544 aaKnown RBP5.79□□□□□ -1.48
VPS53-203ENST00000401468 LOC107984156A0A0G2JMH3 177 aa5.79□□□□□ -1.48
VPS53-203ENST00000401468 A0A0J9YXY3 114 aa5.79□□□□□ -1.48
VPS53-203ENST00000401468 TIMM17BO60830 172 aa5.79□□□□□ -1.48
VPS53-203ENST00000401468 KRTAP10-4P60372 401 aaPredicted RBP5.79□□□□□ -1.48
VPS53-203ENST00000401468 C9orf129Q5T035 196 aaKnown RBP5.79□□□□□ -1.48
VPS53-203ENST00000401468 ARL17AQ8IVW1 177 aa5.79□□□□□ -1.48
VPS53-203ENST00000401468 PLAC8Q9NZF1 115 aa5.79□□□□□ -1.48
VPS53-203ENST00000401468 HSBP1L1C9JCN9 74 aa5.78□□□□□ -1.48
VPS53-203ENST00000401468 DLEU1O43261 78 aa5.78□□□□□ -1.48
VPS53-203ENST00000401468 RPL18AQ02543 176 aaKnown RBP5.78□□□□□ -1.48
VPS53-203ENST00000401468 KRTAP7-1Q8IUC3 87 aa5.78□□□□□ -1.48
VPS53-203ENST00000401468 PCP2Q8IVA1 136 aa5.78□□□□□ -1.48
VPS53-203ENST00000401468 LITAFQ99732 161 aa5.78□□□□□ -1.48
VPS53-203ENST00000401468 TTTY13Q9BZ97 58 aa5.78□□□□□ -1.48
VPS53-203ENST00000401468 ZNF815PA8K554 130 aa5.77□□□□□ -1.49
VPS53-203ENST00000401468 GAGE2BQ13066 116 aa5.77□□□□□ -1.49
VPS53-203ENST00000401468 KRTAP15-1Q3LI76 137 aa5.77□□□□□ -1.49
VPS53-203ENST00000401468 BOD1L2Q8IYS8 172 aa5.77□□□□□ -1.49
VPS53-203ENST00000401468 SND1-IT1Q9HBX3 110 aa5.77□□□□□ -1.49
VPS53-203ENST00000401468 IGLV5-37A0A075B6J1 123 aa5.76□□□□□ -1.49
VPS53-203ENST00000401468 A0A087WYN8 130 aa5.76□□□□□ -1.49
VPS53-203ENST00000401468 IGKV2-24A0A0C4DH68 120 aa5.76□□□□□ -1.49
VPS53-203ENST00000401468 SMIM13P0DJ93 91 aa5.76□□□□□ -1.49
VPS53-203ENST00000401468 COX8AP10176 69 aa5.76□□□□□ -1.49
VPS53-203ENST00000401468 PFN2P35080 140 aa5.76□□□□□ -1.49
VPS53-203ENST00000401468 VAMP8Q9BV40 100 aa5.76□□□□□ -1.49
VPS53-203ENST00000401468 PPDPFQ9H3Y8 114 aa5.76□□□□□ -1.49
VPS53-203ENST00000401468 A0A1W2PNN7 141 aa5.75□□□□□ -1.49
VPS53-203ENST00000401468 SMIM6P0DI80 62 aa5.75□□□□□ -1.49
VPS53-203ENST00000401468 LINC00158P58513 81 aa5.75□□□□□ -1.49
VPS53-203ENST00000401468 RPL37AP61513 92 aaKnown RBP5.75□□□□□ -1.49
VPS53-203ENST00000401468 GAGE2EQ4V326 116 aa5.75□□□□□ -1.49
VPS53-203ENST00000401468 MEIG1Q5JSS6 88 aa5.75□□□□□ -1.49
VPS53-203ENST00000401468 ADAMTSL4-AS1Q5T5F5 129 aa5.75□□□□□ -1.49
VPS53-203ENST00000401468 GAGE2DQ9UEU5 116 aa5.75□□□□□ -1.49
VPS53-203ENST00000401468 SPATA45Q537H7 98 aa5.74□□□□□ -1.49
VPS53-203ENST00000401468 LBHQ53QV2 105 aaPredicted RBP5.74□□□□□ -1.49
VPS53-203ENST00000401468 MIR7-3HGQ8N6C7 128 aa5.74□□□□□ -1.49
VPS53-203ENST00000401468 SPANXDQ9BXN6 97 aa5.74□□□□□ -1.49
VPS53-203ENST00000401468 XAGE1AQ9HD64 81 aa5.74□□□□□ -1.49
VPS53-203ENST00000401468 SPANXCQ9NY87 97 aa5.74□□□□□ -1.49
VPS53-203ENST00000401468 TP73-AS1Q9UF72 201 aa5.74□□□□□ -1.49
VPS53-203ENST00000401468 PAM16Q9Y3D7 125 aa5.74□□□□□ -1.49
VPS53-203ENST00000401468 FAM168BA1KXE4 195 aa5.73□□□□□ -1.49
VPS53-203ENST00000401468 VPREB1P12018 145 aa5.73□□□□□ -1.49
VPS53-203ENST00000401468 Q6ZVH6 145 aa5.73□□□□□ -1.49
VPS53-203ENST00000401468 Q8NDZ9 215 aa5.73□□□□□ -1.49
VPS53-203ENST00000401468 DPH3Q96FX2 82 aa5.73□□□□□ -1.49
VPS53-203ENST00000401468 SPANXB1Q9NS25 103 aaPredicted RBP5.73□□□□□ -1.49
VPS53-203ENST00000401468 FAT3Q8TDW7 4589 aa5.73□□□□□ -1.49
VPS53-203ENST00000401468 KRTAP29-1A8MX34 341 aaPredicted RBP5.72□□□□□ -1.49
VPS53-203ENST00000401468 TMEM238C9JI98 176 aa5.72□□□□□ -1.49
VPS53-203ENST00000401468 SERTAD4-AS1Q5TG53 156 aa5.72□□□□□ -1.49
VPS53-203ENST00000401468 SOSTDC1Q6X4U4 206 aa5.72□□□□□ -1.49
VPS53-203ENST00000401468 HIGD1BQ9P298 99 aa5.72□□□□□ -1.49
VPS53-203ENST00000401468 A0A0U1RRA0 63 aa5.71□□□□□ -1.5
VPS53-203ENST00000401468 NDUFC2O95298 119 aa5.71□□□□□ -1.5
VPS53-203ENST00000401468 SCGB1D4Q6XE38 83 aa5.71□□□□□ -1.5
VPS53-203ENST00000401468 DAND5Q8N907 189 aa5.71□□□□□ -1.5
VPS53-203ENST00000401468 C14orf144Q96I85 54 aa5.71□□□□□ -1.5
VPS53-203ENST00000401468 C12orf57Q99622 126 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 120.2 ms