RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 IBA57-AS1B1ANH7 110 aa7.75□□□□□ -1.17
CUX1-204ENST00000393824 K7EQD1 137 aa7.75□□□□□ -1.17
CUX1-204ENST00000393824 SLPIP03973 132 aa7.75□□□□□ -1.17
CUX1-204ENST00000393824 LINC00158P58513 81 aa7.75□□□□□ -1.17
CUX1-204ENST00000393824 C9orf66Q5T8R8 295 aa7.75□□□□□ -1.17
CUX1-204ENST00000393824 C20orf197Q8N268 126 aa7.74□□□□□ -1.17
CUX1-204ENST00000393824 FAM19A1Q7Z5A9 133 aa7.74□□□□□ -1.17
CUX1-204ENST00000393824 TRBV6-4A0A1B0GX49 114 aa7.73□□□□□ -1.17
CUX1-204ENST00000393824 H7BZZ5 65 aa7.73□□□□□ -1.17
CUX1-204ENST00000393824 GIG44P09565 113 aaPredicted RBP7.73□□□□□ -1.17
CUX1-204ENST00000393824 ENHOQ6UWT2 76 aa7.73□□□□□ -1.17
CUX1-204ENST00000393824 TENM3Q9P273 2699 aa7.73□□□□□ -1.17
CUX1-204ENST00000393824 TMEM256-PLSCR3K7ERE1 68 aa7.72□□□□□ -1.17
CUX1-204ENST00000393824 TRAV7A0A075B6U4 112 aa7.71□□□□□ -1.18
CUX1-204ENST00000393824 TRGV1A0A0A0MS02 117 aa7.71□□□□□ -1.18
CUX1-204ENST00000393824 PAX4O43316 350 aa7.71□□□□□ -1.18
CUX1-204ENST00000393824 PRB2P02812 416 aaPredicted RBP7.71□□□□□ -1.18
CUX1-204ENST00000393824 KLKP1Q107X0 134 aa7.71□□□□□ -1.18
CUX1-204ENST00000393824 UBL5Q9BZL1 73 aa7.71□□□□□ -1.18
CUX1-204ENST00000393824 UBE2L6O14933 153 aa7.7□□□□□ -1.18
CUX1-204ENST00000393824 C1orf158Q8N1D5 194 aa7.7□□□□□ -1.18
CUX1-204ENST00000393824 TOMM7Q9P0U1 55 aa7.7□□□□□ -1.18
CUX1-204ENST00000393824 C6orf226Q5I0X4 101 aa7.7□□□□□ -1.18
CUX1-204ENST00000393824 STHQ8IWL8 128 aa7.7□□□□□ -1.18
CUX1-204ENST00000393824 IGHV3OR16-9A0A0B4J2B5 98 aa7.69□□□□□ -1.18
CUX1-204ENST00000393824 Q8N814 137 aa7.69□□□□□ -1.18
CUX1-204ENST00000393824 MEGF8Q7Z7M0 2845 aa7.68□□□□□ -1.18
CUX1-204ENST00000393824 EGFEM1PQ0D2K5 195 aa7.68□□□□□ -1.18
CUX1-204ENST00000393824 A0A087WZ39 114 aa7.67□□□□□ -1.18
CUX1-204ENST00000393824 CMC4P56277 68 aaPredicted RBP7.67□□□□□ -1.18
CUX1-204ENST00000393824 Q6ZTI0 123 aa7.67□□□□□ -1.18
CUX1-204ENST00000393824 LINC00474Q9P2X8 69 aa7.67□□□□□ -1.18
CUX1-204ENST00000393824 PRKDCP78527 4128 aaKnown RBP7.66□□□□□ -1.18
CUX1-204ENST00000393824 NANOS2P60321 138 aaKnown RBP7.66□□□□□ -1.18
CUX1-204ENST00000393824 COL7A1Q02388 2944 aa7.66□□□□□ -1.18
CUX1-204ENST00000393824 IGHV4-30-4P0DP06 118 aa7.66□□□□□ -1.18
CUX1-204ENST00000393824 CSNK1G2-AS1Q8NCQ2 148 aa7.66□□□□□ -1.18
CUX1-204ENST00000393824 TRBV7-6A0A0J9YX20 115 aa7.65□□□□□ -1.18
CUX1-204ENST00000393824 KRTAP21-3Q3LHN1 58 aa7.64□□□□□ -1.19
CUX1-204ENST00000393824 PMAIP1Q13794 54 aa7.64□□□□□ -1.19
CUX1-204ENST00000393824 C16orf74Q96GX8 76 aa7.64□□□□□ -1.19
CUX1-204ENST00000393824 Q6ZQT0 140 aa7.63□□□□□ -1.19
CUX1-204ENST00000393824 LOC110117498A0A087WWA1 95 aa7.63□□□□□ -1.19
CUX1-204ENST00000393824 RBM3P98179 157 aaKnown RBP7.63□□□□□ -1.19
CUX1-204ENST00000393824 HUWE1Q7Z6Z7 4374 aaKnown RBP7.63□□□□□ -1.19
CUX1-204ENST00000393824 IGLV4-60A0A075B6I1 120 aa7.62□□□□□ -1.19
CUX1-204ENST00000393824 NDUFC1O43677 76 aa7.62□□□□□ -1.19
CUX1-204ENST00000393824 LINC01547P58512 204 aaPredicted RBP7.62□□□□□ -1.19
CUX1-204ENST00000393824 NOP10Q9NPE3 64 aaKnown RBP7.62□□□□□ -1.19
CUX1-204ENST00000393824 TRBV6-8A0A0A6YYG3 113 aa7.62□□□□□ -1.19
CUX1-204ENST00000393824 F8WEM9 126 aa7.61□□□□□ -1.19
CUX1-204ENST00000393824 ATP5EP56381 51 aaPredicted RBP7.61□□□□□ -1.19
CUX1-204ENST00000393824 DEFB135Q30KP9 77 aa7.61□□□□□ -1.19
CUX1-204ENST00000393824 TRAV10A0A0B4J240 114 aa7.61□□□□□ -1.19
CUX1-204ENST00000393824 IGKV3OR2-268A0A0C4DH90 116 aa7.61□□□□□ -1.19
CUX1-204ENST00000393824 RMI2Q96E14 147 aa7.61□□□□□ -1.19
CUX1-204ENST00000393824 STAB2Q8WWQ8 2551 aa7.6□□□□□ -1.19
CUX1-204ENST00000393824 CXCL6P80162 114 aa7.6□□□□□ -1.19
CUX1-204ENST00000393824 SNURFQ9Y675 71 aa7.6□□□□□ -1.19
CUX1-204ENST00000393824 DNAH9Q9NYC9 4486 aa7.6□□□□□ -1.19
CUX1-204ENST00000393824 TRGV2A0A075B6R0 118 aa7.6□□□□□ -1.19
CUX1-204ENST00000393824 PLAC8L1A1L4L8 177 aa7.6□□□□□ -1.19
CUX1-204ENST00000393824 Q6ZVQ6 151 aa7.6□□□□□ -1.19
CUX1-204ENST00000393824 C6orf223Q8N319 242 aa7.6□□□□□ -1.19
CUX1-204ENST00000393824 K7EIL1 84 aa7.59□□□□□ -1.19
CUX1-204ENST00000393824 ZNF561-AS1K7EIQ3 104 aa7.59□□□□□ -1.19
CUX1-204ENST00000393824 Q8IZM0 81 aa7.59□□□□□ -1.19
CUX1-204ENST00000393824 RETNQ9HD89 108 aa7.59□□□□□ -1.19
CUX1-204ENST00000393824 TRGV4A0A0C4DH28 118 aa7.58□□□□□ -1.2
CUX1-204ENST00000393824 LINC00959A0A1B0GUT2 108 aa7.58□□□□□ -1.2
CUX1-204ENST00000393824 LINC00575Q6W349 94 aa7.58□□□□□ -1.2
CUX1-204ENST00000393824 X6R8D5 127 aa7.58□□□□□ -1.2
CUX1-204ENST00000393824 DEFB4AO15263 64 aa7.58□□□□□ -1.2
CUX1-204ENST00000393824 PRR3P79522 188 aaKnown RBP7.58□□□□□ -1.2
CUX1-204ENST00000393824 LOC100131303A0A0U1RQF7 123 aa7.57□□□□□ -1.2
CUX1-204ENST00000393824 PDE6GP18545 87 aa7.57□□□□□ -1.2
CUX1-204ENST00000393824 HAMPP81172 84 aa7.57□□□□□ -1.2
CUX1-204ENST00000393824 KPRPQ5T749 579 aaPredicted RBP7.57□□□□□ -1.2
CUX1-204ENST00000393824 PRR15Q8IV56 129 aa7.57□□□□□ -1.2
CUX1-204ENST00000393824 TRBV7-4A0A0J9YYF1 115 aa7.57□□□□□ -1.2
CUX1-204ENST00000393824 COX17Q14061 63 aa7.57□□□□□ -1.2
CUX1-204ENST00000393824 C6orf99Q4VX62 202 aa7.57□□□□□ -1.2
CUX1-204ENST00000393824 M0R2N4 97 aa7.56□□□□□ -1.2
CUX1-204ENST00000393824 C11orf68Q9H3H3 251 aaKnown RBP7.56□□□□□ -1.2
CUX1-204ENST00000393824 FBN3Q75N90 2809 aa7.56□□□□□ -1.2
CUX1-204ENST00000393824 A0A1B0GUV1 79 aa7.56□□□□□ -1.2
CUX1-204ENST00000393824 Q6ZRU5 148 aa7.56□□□□□ -1.2
CUX1-204ENST00000393824 Q8N3U1 123 aa7.56□□□□□ -1.2
CUX1-204ENST00000393824 MPLKIPQ8TAP9 179 aa7.56□□□□□ -1.2
CUX1-204ENST00000393824 CD164Q04900 197 aa7.55□□□□□ -1.2
CUX1-204ENST00000393824 LAMTOR3Q9UHA4 124 aa7.55□□□□□ -1.2
CUX1-204ENST00000393824 H3BQ85 93 aa7.54□□□□□ -1.2
CUX1-204ENST00000393824 MIFP14174 115 aa7.54□□□□□ -1.2
CUX1-204ENST00000393824 TM2D3Q9BRN9 247 aa7.54□□□□□ -1.2
CUX1-204ENST00000393824 ERC2-IT1O76042 136 aa7.53□□□□□ -1.2
CUX1-204ENST00000393824 APOC4P55056 127 aa7.53□□□□□ -1.2
CUX1-204ENST00000393824 FAM229BQ4G0N7 80 aa7.53□□□□□ -1.2
CUX1-204ENST00000393824 IGHV4-28A0A0C4DH34 117 aa7.52□□□□□ -1.2
CUX1-204ENST00000393824 KIAA0087Q14695 138 aa7.52□□□□□ -1.21
CUX1-204ENST00000393824 Q8NAQ8 132 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms