RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 C14orf132Q9NPU4 83 aa10.36□□□□□ -0.75
UPF3B-202ENST00000345865 GAGE2AQ6NT46 116 aa10.35□□□□□ -0.75
UPF3B-202ENST00000345865 MAST4O15021 2626 aa10.35□□□□□ -0.75
UPF3B-202ENST00000345865 H3BNG1 76 aa10.35□□□□□ -0.75
UPF3B-202ENST00000345865 KRTAP26-1Q6PEX3 210 aa10.34□□□□□ -0.75
UPF3B-202ENST00000345865 LINC00167Q96N53 147 aa10.34□□□□□ -0.75
UPF3B-202ENST00000345865 C6orf48Q9UBA6 75 aa10.34□□□□□ -0.75
UPF3B-202ENST00000345865 NOTCH1P46531 2555 aa10.34□□□□□ -0.75
UPF3B-202ENST00000345865 TRBV7-7A0A0K0K1E9 115 aa10.34□□□□□ -0.75
UPF3B-202ENST00000345865 C6orf99Q4VX62 202 aa10.34□□□□□ -0.75
UPF3B-202ENST00000345865 Q8N814 137 aa10.34□□□□□ -0.75
UPF3B-202ENST00000345865 ESRGQ1W209 222 aa10.33□□□□□ -0.76
UPF3B-202ENST00000345865 ORMDL1Q9P0S3 153 aa10.33□□□□□ -0.76
UPF3B-202ENST00000345865 GVQW2A0A096LPI5 108 aaPredicted RBP10.32□□□□□ -0.76
UPF3B-202ENST00000345865 C3orf56Q8N813 242 aa10.32□□□□□ -0.76
UPF3B-202ENST00000345865 S100A7L2Q5SY68 101 aa10.31□□□□□ -0.76
UPF3B-202ENST00000345865 LINC00643Q86TS7 51 aa10.31□□□□□ -0.76
UPF3B-202ENST00000345865 HIGD2BQ4VC39 106 aa10.3□□□□□ -0.76
UPF3B-202ENST00000345865 XAGE1AQ9HD64 81 aa10.3□□□□□ -0.76
UPF3B-202ENST00000345865 RPL18AQ02543 176 aaKnown RBP10.3□□□□□ -0.76
UPF3B-202ENST00000345865 MUC7Q8TAX7 377 aa10.3□□□□□ -0.76
UPF3B-202ENST00000345865 A0A1B0GX51 115 aa10.29□□□□□ -0.76
UPF3B-202ENST00000345865 IGLV6-57P01721 117 aa10.29□□□□□ -0.76
UPF3B-202ENST00000345865 C15orf56Q8N910 161 aa10.27□□□□□ -0.77
UPF3B-202ENST00000345865 HUWE1Q7Z6Z7 4374 aaKnown RBP10.27□□□□□ -0.77
UPF3B-202ENST00000345865 DEFB131BA0A096LNP1 70 aa10.27□□□□□ -0.77
UPF3B-202ENST00000345865 LINC00575Q6W349 94 aa10.27□□□□□ -0.77
UPF3B-202ENST00000345865 LINC00846Q9NV44 126 aa10.26□□□□□ -0.77
UPF3B-202ENST00000345865 COL6A5A8TX70 2615 aa10.25□□□□□ -0.77
UPF3B-202ENST00000345865 ZNF561-AS1K7EIQ3 104 aa10.25□□□□□ -0.77
UPF3B-202ENST00000345865 C11orf45Q8TAV5 145 aa10.25□□□□□ -0.77
UPF3B-202ENST00000345865 NBEAL1Q6ZS30 2694 aa10.25□□□□□ -0.77
UPF3B-202ENST00000345865 DNAH1Q9P2D7 4330 aa10.25□□□□□ -0.77
UPF3B-202ENST00000345865 Q6ZRU5 148 aa10.25□□□□□ -0.77
UPF3B-202ENST00000345865 CAMK2N2Q96S95 79 aa10.25□□□□□ -0.77
UPF3B-202ENST00000345865 IMUPQ9GZP8 106 aa10.25□□□□□ -0.77
UPF3B-202ENST00000345865 TRBV10-3A0A0K0K1G6 114 aa10.24□□□□□ -0.77
UPF3B-202ENST00000345865 CCDC179H3BU77 68 aa10.24□□□□□ -0.77
UPF3B-202ENST00000345865 TMEM256-PLSCR3K7ERE1 68 aa10.24□□□□□ -0.77
UPF3B-202ENST00000345865 BAHCC1Q9P281 2608 aa10.24□□□□□ -0.77
UPF3B-202ENST00000345865 PRB2P02812 416 aaPredicted RBP10.23□□□□□ -0.77
UPF3B-202ENST00000345865 FAM236AA0A1B0GUQ0 79 aa10.22□□□□□ -0.77
UPF3B-202ENST00000345865 FAM236BA0A1B0GV22 79 aa10.22□□□□□ -0.77
UPF3B-202ENST00000345865 LINC01556Q5JQF7 62 aa10.22□□□□□ -0.77
UPF3B-202ENST00000345865 hADV29S1A0JD25 119 aa10.21□□□□□ -0.77
UPF3B-202ENST00000345865 CCKP06307 115 aa10.21□□□□□ -0.77
UPF3B-202ENST00000345865 C1orf43Q9BWL3 253 aa10.21□□□□□ -0.78
UPF3B-202ENST00000345865 VPREB1P12018 145 aa10.2□□□□□ -0.78
UPF3B-202ENST00000345865 IGKV2D-24A0A075B6R9 120 aa10.19□□□□□ -0.78
UPF3B-202ENST00000345865 TRAV23DV6A0A075B6W5 121 aa10.19□□□□□ -0.78
UPF3B-202ENST00000345865 JMJD7-PLA2G4BH0Y9G9 81 aa10.19□□□□□ -0.78
UPF3B-202ENST00000345865 B5MCH6 92 aa10.18□□□□□ -0.78
UPF3B-202ENST00000345865 C2orf48Q96LS8 159 aa10.18□□□□□ -0.78
UPF3B-202ENST00000345865 IGKV3D-7A0A0C4DH55 119 aa10.17□□□□□ -0.78
UPF3B-202ENST00000345865 NDUFC2-KCTD14E9PQ53 114 aa10.17□□□□□ -0.78
UPF3B-202ENST00000345865 Q6ZRP5 223 aa10.17□□□□□ -0.78
UPF3B-202ENST00000345865 Q6ZQY7 126 aa10.17□□□□□ -0.78
UPF3B-202ENST00000345865 ZNF73O43830 326 aaPredicted RBP10.16□□□□□ -0.78
UPF3B-202ENST00000345865 DIRC1Q969H9 104 aa10.16□□□□□ -0.78
UPF3B-202ENST00000345865 DNAH10OSP0CZ25 163 aa10.16□□□□□ -0.78
UPF3B-202ENST00000345865 LYSTQ99698 3801 aa10.16□□□□□ -0.78
UPF3B-202ENST00000345865 Q6JHZ5 121 aa10.15□□□□□ -0.79
UPF3B-202ENST00000345865 LINC00588Q9Y4M8 146 aa10.13□□□□□ -0.79
UPF3B-202ENST00000345865 M0R378 163 aa10.12□□□□□ -0.79
UPF3B-202ENST00000345865 ELOF1P60002 83 aaKnown RBP10.12□□□□□ -0.79
UPF3B-202ENST00000345865 MRAPQ8TCY5 172 aa10.12□□□□□ -0.79
UPF3B-202ENST00000345865 M0R2N4 97 aa10.12□□□□□ -0.79
UPF3B-202ENST00000345865 SYCNQ0VAF6 134 aa10.12□□□□□ -0.79
UPF3B-202ENST00000345865 CASC10Q5T4H9 136 aa10.12□□□□□ -0.79
UPF3B-202ENST00000345865 TM2D3Q9BRN9 247 aa10.12□□□□□ -0.79
UPF3B-202ENST00000345865 TRAV10A0A0B4J240 114 aa10.11□□□□□ -0.79
UPF3B-202ENST00000345865 K7EIL1 84 aa10.11□□□□□ -0.79
UPF3B-202ENST00000345865 COX7BP24311 80 aa10.11□□□□□ -0.79
UPF3B-202ENST00000345865 HIST1H4AP62805 103 aaKnown RBP10.11□□□□□ -0.79
UPF3B-202ENST00000345865 RBM3P98179 157 aaKnown RBP10.11□□□□□ -0.79
UPF3B-202ENST00000345865 Q6ZQT0 140 aa10.11□□□□□ -0.79
UPF3B-202ENST00000345865 LAMTOR3Q9UHA4 124 aa10.11□□□□□ -0.79
UPF3B-202ENST00000345865 A0A087WVE0 104 aa10.1□□□□□ -0.79
UPF3B-202ENST00000345865 DNAH10Q8IVF4 4471 aa10.1□□□□□ -0.79
UPF3B-202ENST00000345865 SS18L2Q9UHA2 77 aa10.1□□□□□ -0.79
UPF3B-202ENST00000345865 COL7A1Q02388 2944 aa10.09□□□□□ -0.79
UPF3B-202ENST00000345865 MGAM2Q2M2H8 2515 aa10.08□□□□□ -0.8
UPF3B-202ENST00000345865 LOC110117498A0A087WWA1 95 aa10.08□□□□□ -0.8
UPF3B-202ENST00000345865 TRBV7-6A0A0J9YX20 115 aa10.08□□□□□ -0.8
UPF3B-202ENST00000345865 SERTAD4-AS1Q5TG53 156 aa10.08□□□□□ -0.8
UPF3B-202ENST00000345865 F8WDY8 70 aa10.07□□□□□ -0.8
UPF3B-202ENST00000345865 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.07□□□□□ -0.8
UPF3B-202ENST00000345865 LINC00528Q8N1L1 170 aa10.07□□□□□ -0.8
UPF3B-202ENST00000345865 DNAH9Q9NYC9 4486 aa10.06□□□□□ -0.8
UPF3B-202ENST00000345865 USP17L23D6RBM5 183 aa10.05□□□□□ -0.8
UPF3B-202ENST00000345865 DSCR8Q96T75 97 aa10.03□□□□□ -0.8
UPF3B-202ENST00000345865 C7orf33Q8WU49 177 aa10.02□□□□□ -0.8
UPF3B-202ENST00000345865 FAM168BA1KXE4 195 aa10.02□□□□□ -0.81
UPF3B-202ENST00000345865 STAB2Q8WWQ8 2551 aa10.01□□□□□ -0.81
UPF3B-202ENST00000345865 H3BQ85 93 aa10.01□□□□□ -0.81
UPF3B-202ENST00000345865 TLX1NBP0CAT3 122 aa10.01□□□□□ -0.81
UPF3B-202ENST00000345865 FAM19A1Q7Z5A9 133 aa10.01□□□□□ -0.81
UPF3B-202ENST00000345865 C3orf22Q8N5N4 141 aa10.01□□□□□ -0.81
UPF3B-202ENST00000345865 UBL5Q9BZL1 73 aa10.01□□□□□ -0.81
UPF3B-202ENST00000345865 KCNQ1DNQ9H478 68 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms