RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 DEFB131BA0A096LNP1 70 aa9.96□□□□□ -0.82
CLCNKA-201ENST00000331433 HIGD2BQ4VC39 106 aa9.96□□□□□ -0.82
CLCNKA-201ENST00000331433 PRB2P02812 416 aaPredicted RBP9.95□□□□□ -0.82
CLCNKA-201ENST00000331433 C11orf45Q8TAV5 145 aa9.95□□□□□ -0.82
CLCNKA-201ENST00000331433 INAFM2P0DMQ5 153 aa9.94□□□□□ -0.82
CLCNKA-201ENST00000331433 S100A7L2Q5SY68 101 aa9.94□□□□□ -0.82
CLCNKA-201ENST00000331433 ACYP1P07311 99 aa9.94□□□□□ -0.82
CLCNKA-201ENST00000331433 C6orf99Q4VX62 202 aa9.94□□□□□ -0.82
CLCNKA-201ENST00000331433 GAGE2AQ6NT46 116 aa9.94□□□□□ -0.82
CLCNKA-201ENST00000331433 KRTAP26-1Q6PEX3 210 aa9.94□□□□□ -0.82
CLCNKA-201ENST00000331433 SMCR5Q8TEV8 140 aa9.94□□□□□ -0.82
CLCNKA-201ENST00000331433 C14orf132Q9NPU4 83 aa9.94□□□□□ -0.82
CLCNKA-201ENST00000331433 XAGE1AQ9HD64 81 aa9.93□□□□□ -0.82
CLCNKA-201ENST00000331433 GVQW2A0A096LPI5 108 aaPredicted RBP9.93□□□□□ -0.82
CLCNKA-201ENST00000331433 RPL18AQ02543 176 aaKnown RBP9.93□□□□□ -0.82
CLCNKA-201ENST00000331433 ORMDL1Q9P0S3 153 aa9.93□□□□□ -0.82
CLCNKA-201ENST00000331433 Q8N814 137 aa9.92□□□□□ -0.82
CLCNKA-201ENST00000331433 ZNF561-AS1K7EIQ3 104 aa9.92□□□□□ -0.82
CLCNKA-201ENST00000331433 MUC7Q8TAX7 377 aa9.91□□□□□ -0.82
CLCNKA-201ENST00000331433 CAMK2N2Q96S95 79 aa9.91□□□□□ -0.82
CLCNKA-201ENST00000331433 Q6Q795 121 aa9.9□□□□□ -0.83
CLCNKA-201ENST00000331433 C15orf56Q8N910 161 aa9.9□□□□□ -0.83
CLCNKA-201ENST00000331433 OBSCN-AS1Q96MR7 158 aa9.9□□□□□ -0.83
CLCNKA-201ENST00000331433 ANAPC13Q9BS18 74 aa9.9□□□□□ -0.83
CLCNKA-201ENST00000331433 LINC00167Q96N53 147 aa9.89□□□□□ -0.83
CLCNKA-201ENST00000331433 IGLV6-57P01721 117 aa9.88□□□□□ -0.83
CLCNKA-201ENST00000331433 NDUFV3P56181 108 aaKnown RBP9.88□□□□□ -0.83
CLCNKA-201ENST00000331433 LINC01556Q5JQF7 62 aa9.88□□□□□ -0.83
CLCNKA-201ENST00000331433 C1orf43Q9BWL3 253 aa9.88□□□□□ -0.83
CLCNKA-201ENST00000331433 A0A1B0GX51 115 aa9.88□□□□□ -0.83
CLCNKA-201ENST00000331433 Q6ZRU5 148 aa9.88□□□□□ -0.83
CLCNKA-201ENST00000331433 IGKV2D-24A0A075B6R9 120 aa9.87□□□□□ -0.83
CLCNKA-201ENST00000331433 TRBV10-3A0A0K0K1G6 114 aa9.87□□□□□ -0.83
CLCNKA-201ENST00000331433 SDIM1Q6ZPB5 146 aa9.87□□□□□ -0.83
CLCNKA-201ENST00000331433 MGAM2Q2M2H8 2515 aa9.86□□□□□ -0.83
CLCNKA-201ENST00000331433 NHLRC4P0CG21 123 aaPredicted RBP9.86□□□□□ -0.83
CLCNKA-201ENST00000331433 MRAPQ8TCY5 172 aa9.86□□□□□ -0.83
CLCNKA-201ENST00000331433 TRBV7-7A0A0K0K1E9 115 aa9.85□□□□□ -0.83
CLCNKA-201ENST00000331433 LINC00575Q6W349 94 aa9.85□□□□□ -0.83
CLCNKA-201ENST00000331433 LINC00643Q86TS7 51 aa9.85□□□□□ -0.83
CLCNKA-201ENST00000331433 HUWE1Q7Z6Z7 4374 aaKnown RBP9.84□□□□□ -0.83
CLCNKA-201ENST00000331433 TMEM256-PLSCR3K7ERE1 68 aa9.83□□□□□ -0.84
CLCNKA-201ENST00000331433 TRAV23DV6A0A075B6W5 121 aa9.82□□□□□ -0.84
CLCNKA-201ENST00000331433 hADV29S1A0JD25 119 aa9.82□□□□□ -0.84
CLCNKA-201ENST00000331433 K7EIL1 84 aa9.82□□□□□ -0.84
CLCNKA-201ENST00000331433 C2orf48Q96LS8 159 aa9.82□□□□□ -0.84
CLCNKA-201ENST00000331433 TRAV10A0A0B4J240 114 aa9.81□□□□□ -0.84
CLCNKA-201ENST00000331433 DNAH10OSP0CZ25 163 aa9.81□□□□□ -0.84
CLCNKA-201ENST00000331433 NDUFC2-KCTD14E9PQ53 114 aa9.81□□□□□ -0.84
CLCNKA-201ENST00000331433 VPREB1P12018 145 aa9.81□□□□□ -0.84
CLCNKA-201ENST00000331433 LINC00846Q9NV44 126 aa9.81□□□□□ -0.84
CLCNKA-201ENST00000331433 TM2D3Q9BRN9 247 aa9.8□□□□□ -0.84
CLCNKA-201ENST00000331433 LINC00588Q9Y4M8 146 aa9.8□□□□□ -0.84
CLCNKA-201ENST00000331433 Q6ZRP5 223 aa9.8□□□□□ -0.84
CLCNKA-201ENST00000331433 JMJD7-PLA2G4BH0Y9G9 81 aa9.79□□□□□ -0.84
CLCNKA-201ENST00000331433 DIRC1Q969H9 104 aa9.79□□□□□ -0.84
CLCNKA-201ENST00000331433 ZNF73O43830 326 aaPredicted RBP9.78□□□□□ -0.84
CLCNKA-201ENST00000331433 SYCNQ0VAF6 134 aa9.78□□□□□ -0.84
CLCNKA-201ENST00000331433 IMUPQ9GZP8 106 aa9.78□□□□□ -0.84
CLCNKA-201ENST00000331433 FAM236AA0A1B0GUQ0 79 aa9.77□□□□□ -0.85
CLCNKA-201ENST00000331433 FAM236BA0A1B0GV22 79 aa9.77□□□□□ -0.85
CLCNKA-201ENST00000331433 CCKP06307 115 aa9.77□□□□□ -0.85
CLCNKA-201ENST00000331433 Q6ZQY7 126 aa9.77□□□□□ -0.85
CLCNKA-201ENST00000331433 CASC10Q5T4H9 136 aa9.76□□□□□ -0.85
CLCNKA-201ENST00000331433 DNHD1Q96M86 4753 aa9.76□□□□□ -0.85
CLCNKA-201ENST00000331433 STAB2Q8WWQ8 2551 aa9.75□□□□□ -0.85
CLCNKA-201ENST00000331433 M0R378 163 aa9.75□□□□□ -0.85
CLCNKA-201ENST00000331433 IGKV3D-7A0A0C4DH55 119 aa9.74□□□□□ -0.85
CLCNKA-201ENST00000331433 COX7BP24311 80 aa9.74□□□□□ -0.85
CLCNKA-201ENST00000331433 LAMTOR3Q9UHA4 124 aa9.74□□□□□ -0.85
CLCNKA-201ENST00000331433 CCDC179H3BU77 68 aa9.74□□□□□ -0.85
CLCNKA-201ENST00000331433 LYSTQ99698 3801 aa9.73□□□□□ -0.85
CLCNKA-201ENST00000331433 DNAH1Q9P2D7 4330 aa9.73□□□□□ -0.85
CLCNKA-201ENST00000331433 ELOF1P60002 83 aaKnown RBP9.73□□□□□ -0.85
CLCNKA-201ENST00000331433 COL7A1Q02388 2944 aa9.73□□□□□ -0.85
CLCNKA-201ENST00000331433 MDFIQ99750 246 aa9.73□□□□□ -0.85
CLCNKA-201ENST00000331433 USP17L23D6RBM5 183 aa9.71□□□□□ -0.85
CLCNKA-201ENST00000331433 F8WDY8 70 aa9.71□□□□□ -0.85
CLCNKA-201ENST00000331433 RBM3P98179 157 aaKnown RBP9.71□□□□□ -0.85
CLCNKA-201ENST00000331433 SERTAD4-AS1Q5TG53 156 aa9.71□□□□□ -0.86
CLCNKA-201ENST00000331433 Q6JHZ5 121 aa9.7□□□□□ -0.86
CLCNKA-201ENST00000331433 TRBV7-6A0A0J9YX20 115 aa9.68□□□□□ -0.86
CLCNKA-201ENST00000331433 B5MCH6 92 aa9.68□□□□□ -0.86
CLCNKA-201ENST00000331433 Q6ZQT0 140 aa9.68□□□□□ -0.86
CLCNKA-201ENST00000331433 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.67□□□□□ -0.86
CLCNKA-201ENST00000331433 NKAPP1Q8N9T2 125 aa9.67□□□□□ -0.86
CLCNKA-201ENST00000331433 M0R2N4 97 aa9.67□□□□□ -0.86
CLCNKA-201ENST00000331433 LINC00528Q8N1L1 170 aa9.67□□□□□ -0.86
CLCNKA-201ENST00000331433 A0A087WVE0 104 aa9.66□□□□□ -0.86
CLCNKA-201ENST00000331433 C7orf33Q8WU49 177 aa9.66□□□□□ -0.86
CLCNKA-201ENST00000331433 LOC110117498A0A087WWA1 95 aa9.65□□□□□ -0.86
CLCNKA-201ENST00000331433 FAM168BA1KXE4 195 aa9.65□□□□□ -0.86
CLCNKA-201ENST00000331433 DSCR8Q96T75 97 aa9.65□□□□□ -0.86
CLCNKA-201ENST00000331433 DNAH10Q8IVF4 4471 aa9.65□□□□□ -0.87
CLCNKA-201ENST00000331433 TLX1NBP0CAT3 122 aa9.64□□□□□ -0.87
CLCNKA-201ENST00000331433 UPK3BQ9BT76 320 aa9.64□□□□□ -0.87
CLCNKA-201ENST00000331433 RMI2Q96E14 147 aa9.64□□□□□ -0.87
CLCNKA-201ENST00000331433 DNAH9Q9NYC9 4486 aa9.63□□□□□ -0.87
CLCNKA-201ENST00000331433 H3BQ85 93 aa9.63□□□□□ -0.87
CLCNKA-201ENST00000331433 KCNQ1DNQ9H478 68 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms