RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 LINC01556Q5JQF7 62 aa8.81□□□□□ -1
COL3A1-201ENST00000304636 H3BPC8 53 aa8.8□□□□□ -1
COL3A1-201ENST00000304636 Q8NBF4 154 aa8.8□□□□□ -1
COL3A1-201ENST00000304636 LINC00167Q96N53 147 aa8.8□□□□□ -1
COL3A1-201ENST00000304636 TP53AIP1Q9HCN2 124 aa8.8□□□□□ -1
COL3A1-201ENST00000304636 NCOR2Q9Y618 2525 aa8.8□□□□□ -1
COL3A1-201ENST00000304636 SERTAD4-AS1Q5TG53 156 aa8.79□□□□□ -1
COL3A1-201ENST00000304636 ERC2-IT1O76042 136 aa8.78□□□□□ -1
COL3A1-201ENST00000304636 NUPR2A6NF83 97 aa8.78□□□□□ -1
COL3A1-201ENST00000304636 Q6ZRX8 168 aa8.77□□□□□ -1.01
COL3A1-201ENST00000304636 GVQW2A0A096LPI5 108 aaPredicted RBP8.76□□□□□ -1.01
COL3A1-201ENST00000304636 H3BNG1 76 aa8.76□□□□□ -1.01
COL3A1-201ENST00000304636 IGLV6-57P01721 117 aa8.76□□□□□ -1.01
COL3A1-201ENST00000304636 EIF4EBP3O60516 100 aaPredicted RBP8.75□□□□□ -1.01
COL3A1-201ENST00000304636 LY6G6CO95867 125 aa8.74□□□□□ -1.01
COL3A1-201ENST00000304636 PCSK5Q92824 1860 aa8.74□□□□□ -1.01
COL3A1-201ENST00000304636 CENPFP49454 3210 aa8.73□□□□□ -1.01
COL3A1-201ENST00000304636 LINC00476Q8WZB0 136 aa8.73□□□□□ -1.01
COL3A1-201ENST00000304636 IGLV5-52A0A0A0MRZ9 124 aa8.72□□□□□ -1.01
COL3A1-201ENST00000304636 KLKP1Q107X0 134 aa8.71□□□□□ -1.01
COL3A1-201ENST00000304636 MUC4Q99102 2169 aa8.71□□□□□ -1.02
COL3A1-201ENST00000304636 SPAG11AQ6PDA7 123 aa8.7□□□□□ -1.02
COL3A1-201ENST00000304636 USP9XQ93008 2570 aaPredicted RBP8.7□□□□□ -1.02
COL3A1-201ENST00000304636 ACYP2P14621 99 aa8.7□□□□□ -1.02
COL3A1-201ENST00000304636 A0A1B0GU69 56 aa8.7□□□□□ -1.02
COL3A1-201ENST00000304636 TRAV22A0A0B4J277 110 aa8.69□□□□□ -1.02
COL3A1-201ENST00000304636 TRBV7-4A0A0J9YYF1 115 aa8.69□□□□□ -1.02
COL3A1-201ENST00000304636 VPREB1P12018 145 aa8.69□□□□□ -1.02
COL3A1-201ENST00000304636 ST20-AS1Q8NBB2 130 aa8.68□□□□□ -1.02
COL3A1-201ENST00000304636 FN1P02751 2386 aaKnown RBP8.68□□□□□ -1.02
COL3A1-201ENST00000304636 IGKV2D-30A0A075B6S6 120 aa8.67□□□□□ -1.02
COL3A1-201ENST00000304636 IGKV2-30P06310 120 aa8.67□□□□□ -1.02
COL3A1-201ENST00000304636 ABCA12Q86UK0 2595 aa8.65□□□□□ -1.02
COL3A1-201ENST00000304636 PIEZO1Q92508 2521 aa8.65□□□□□ -1.02
COL3A1-201ENST00000304636 FSHBP01225 129 aa8.65□□□□□ -1.02
COL3A1-201ENST00000304636 Q6ZRP5 223 aa8.65□□□□□ -1.03
COL3A1-201ENST00000304636 Q8NAQ8 132 aa8.65□□□□□ -1.03
COL3A1-201ENST00000304636 C7orf65Q6ZTY9 151 aa8.64□□□□□ -1.03
COL3A1-201ENST00000304636 H7BZZ5 65 aa8.63□□□□□ -1.03
COL3A1-201ENST00000304636 K7EQZ3 153 aa8.63□□□□□ -1.03
COL3A1-201ENST00000304636 LINC00528Q8N1L1 170 aa8.63□□□□□ -1.03
COL3A1-201ENST00000304636 LINC01600Q96MT4 127 aa8.63□□□□□ -1.03
COL3A1-201ENST00000304636 TLN2Q9Y4G6 2542 aa8.62□□□□□ -1.03
COL3A1-201ENST00000304636 MOBPQ13875 183 aa8.62□□□□□ -1.03
COL3A1-201ENST00000304636 RPL37AP61513 92 aaKnown RBP8.62□□□□□ -1.03
COL3A1-201ENST00000304636 CSNK1G2-AS1Q8NCQ2 148 aa8.61□□□□□ -1.03
COL3A1-201ENST00000304636 KCNQ1DNQ9H478 68 aa8.61□□□□□ -1.03
COL3A1-201ENST00000304636 EPM2AB3EWF7 344 aa8.61□□□□□ -1.03
COL3A1-201ENST00000304636 CYP4F30PQ9H0H9 118 aa8.61□□□□□ -1.03
COL3A1-201ENST00000304636 C16orf90A8MZG2 172 aa8.61□□□□□ -1.03
COL3A1-201ENST00000304636 USP9YO00507 2555 aaPredicted RBP8.61□□□□□ -1.03
COL3A1-201ENST00000304636 A8MWP4 228 aa8.6□□□□□ -1.03
COL3A1-201ENST00000304636 C1orf134Q5TEV5 83 aa8.6□□□□□ -1.03
COL3A1-201ENST00000304636 ATP11AUNQ6ZP68 121 aa8.6□□□□□ -1.03
COL3A1-201ENST00000304636 A8MUN3 132 aa8.6□□□□□ -1.03
COL3A1-201ENST00000304636 CEP295Q9C0D2 2601 aa8.6□□□□□ -1.03
COL3A1-201ENST00000304636 LINC00336Q6ZUF6 198 aa8.59□□□□□ -1.03
COL3A1-201ENST00000304636 ANKRD11Q6UB99 2663 aaPredicted RBP8.59□□□□□ -1.03
COL3A1-201ENST00000304636 PHF5AQ7RTV0 110 aaKnown RBP8.59□□□□□ -1.03
COL3A1-201ENST00000304636 C8orf87E5RJ46 101 aa8.58□□□□□ -1.04
COL3A1-201ENST00000304636 IGLV1-50A0A075B6I6 118 aa8.57□□□□□ -1.04
COL3A1-201ENST00000304636 SETD2Q9BYW2 2564 aaPredicted RBP8.57□□□□□ -1.04
COL3A1-201ENST00000304636 GOLGB1Q14789 3259 aaKnown RBP8.57□□□□□ -1.04
COL3A1-201ENST00000304636 C9orf129Q5T035 196 aaKnown RBP8.57□□□□□ -1.04
COL3A1-201ENST00000304636 COA5Q86WW8 74 aa8.56□□□□□ -1.04
COL3A1-201ENST00000304636 SPINT4Q6UDR6 99 aa8.56□□□□□ -1.04
COL3A1-201ENST00000304636 IGLV8-61A0A075B6I0 122 aa8.56□□□□□ -1.04
COL3A1-201ENST00000304636 LOC101927531A0A1B0GV80 90 aa8.56□□□□□ -1.04
COL3A1-201ENST00000304636 PRR34Q9NV39 138 aa8.55□□□□□ -1.04
COL3A1-201ENST00000304636 ZNF462Q96JM2 2506 aa8.55□□□□□ -1.04
COL3A1-201ENST00000304636 ZNF575Q86XF7 245 aa8.55□□□□□ -1.04
COL3A1-201ENST00000304636 DNAH10OSP0CZ25 163 aa8.54□□□□□ -1.04
COL3A1-201ENST00000304636 OBSCN-AS1Q96MR7 158 aa8.54□□□□□ -1.04
COL3A1-201ENST00000304636 LINC00588Q9Y4M8 146 aa8.54□□□□□ -1.04
COL3A1-201ENST00000304636 FAM168BA1KXE4 195 aa8.53□□□□□ -1.04
COL3A1-201ENST00000304636 PLA2G1BP04054 148 aaKnown RBP8.53□□□□□ -1.04
COL3A1-201ENST00000304636 PKD1L2Q7Z442 2459 aa8.53□□□□□ -1.04
COL3A1-201ENST00000304636 Q8N377 158 aa8.52□□□□□ -1.05
COL3A1-201ENST00000304636 MDFIQ99750 246 aa8.52□□□□□ -1.05
COL3A1-201ENST00000304636 JMJD1CQ15652 2540 aa8.52□□□□□ -1.05
COL3A1-201ENST00000304636 LINC00313P59037 77 aa8.51□□□□□ -1.05
COL3A1-201ENST00000304636 IGFL1Q6UW32 110 aa8.51□□□□□ -1.05
COL3A1-201ENST00000304636 GIG44P09565 113 aaPredicted RBP8.51□□□□□ -1.05
COL3A1-201ENST00000304636 LRRK2Q5S007 2527 aa8.51□□□□□ -1.05
COL3A1-201ENST00000304636 LINC00612Q8N6U2 182 aa8.5□□□□□ -1.05
COL3A1-201ENST00000304636 MRPL34Q9BQ48 92 aaKnown RBP8.5□□□□□ -1.05
COL3A1-201ENST00000304636 PRR15Q8IV56 129 aa8.5□□□□□ -1.05
COL3A1-201ENST00000304636 SPACA4Q8TDM5 124 aa8.5□□□□□ -1.05
COL3A1-201ENST00000304636 C15orf56Q8N910 161 aa8.49□□□□□ -1.05
COL3A1-201ENST00000304636 C19orf73Q9NVV2 129 aa8.47□□□□□ -1.05
COL3A1-201ENST00000304636 PLA2G2DQ9UNK4 145 aa8.46□□□□□ -1.06
COL3A1-201ENST00000304636 FAM229AH3BQW9 127 aa8.46□□□□□ -1.06
COL3A1-201ENST00000304636 CHTF8P0CG12 524 aa8.45□□□□□ -1.06
COL3A1-201ENST00000304636 SSBP3-AS1Q7Z2R9 100 aa8.45□□□□□ -1.06
COL3A1-201ENST00000304636 CD164Q04900 197 aa8.45□□□□□ -1.06
COL3A1-201ENST00000304636 NBDYA0A0U1RRE5 68 aa8.44□□□□□ -1.06
COL3A1-201ENST00000304636 TLX1NBP0CAT3 122 aa8.44□□□□□ -1.06
COL3A1-201ENST00000304636 ZFYVE26Q68DK2 2539 aa8.44□□□□□ -1.06
COL3A1-201ENST00000304636 RTL8CO15255 209 aa8.43□□□□□ -1.06
COL3A1-201ENST00000304636 WIPF1O43516 503 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms