RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 LINC01556Q5JQF7 62 aa11.34□□□□□ -0.59
CPSF4-201ENST00000292476 CFAP161Q6P656 301 aa11.34□□□□□ -0.59
CPSF4-201ENST00000292476 KLK12Q9UKR0 248 aa11.34□□□□□ -0.59
CPSF4-201ENST00000292476 WFDC10BQ8IUB3 73 aa11.33□□□□□ -0.6
CPSF4-201ENST00000292476 CHCHD10Q8WYQ3 142 aaPredicted RBP11.33□□□□□ -0.6
CPSF4-201ENST00000292476 C22orf24Q9Y442 160 aa11.33□□□□□ -0.6
CPSF4-201ENST00000292476 CASC10Q5T4H9 136 aa11.33□□□□□ -0.6
CPSF4-201ENST00000292476 CLPSL2Q6UWE3 100 aa11.33□□□□□ -0.6
CPSF4-201ENST00000292476 TRBV7-7A0A0K0K1E9 115 aa11.32□□□□□ -0.6
CPSF4-201ENST00000292476 A0A1B0GX51 115 aa11.32□□□□□ -0.6
CPSF4-201ENST00000292476 ANAPC13Q9BS18 74 aa11.32□□□□□ -0.6
CPSF4-201ENST00000292476 NUPR2A6NF83 97 aa11.31□□□□□ -0.6
CPSF4-201ENST00000292476 SDIM1Q6ZPB5 146 aa11.31□□□□□ -0.6
CPSF4-201ENST00000292476 KLK5Q9Y337 293 aaPredicted RBP11.31□□□□□ -0.6
CPSF4-201ENST00000292476 DNAH10OSP0CZ25 163 aa11.3□□□□□ -0.6
CPSF4-201ENST00000292476 IMUPQ9GZP8 106 aa11.3□□□□□ -0.6
CPSF4-201ENST00000292476 NDUFV3P56181 108 aaKnown RBP11.3□□□□□ -0.6
CPSF4-201ENST00000292476 Q8N3U1 123 aa11.3□□□□□ -0.6
CPSF4-201ENST00000292476 UPK3BQ9BT76 320 aa11.3□□□□□ -0.6
CPSF4-201ENST00000292476 STARD9Q9P2P6 4700 aa11.29□□□□□ -0.6
CPSF4-201ENST00000292476 ENHOQ6UWT2 76 aa11.29□□□□□ -0.6
CPSF4-201ENST00000292476 LINC00588Q9Y4M8 146 aa11.29□□□□□ -0.6
CPSF4-201ENST00000292476 CSMD3Q7Z407 3707 aa11.29□□□□□ -0.6
CPSF4-201ENST00000292476 A0A087WYN8 130 aa11.28□□□□□ -0.6
CPSF4-201ENST00000292476 TTC32Q5I0X7 151 aa11.28□□□□□ -0.6
CPSF4-201ENST00000292476 OR13C6PQ8NH95 151 aa11.28□□□□□ -0.6
CPSF4-201ENST00000292476 OBSCN-AS1Q96MR7 158 aa11.28□□□□□ -0.6
CPSF4-201ENST00000292476 LINC00643Q86TS7 51 aa11.27□□□□□ -0.6
CPSF4-201ENST00000292476 Q9HAA7 133 aa11.27□□□□□ -0.6
CPSF4-201ENST00000292476 IGLV10-54A0A075B6I4 117 aa11.27□□□□□ -0.61
CPSF4-201ENST00000292476 LINC00167Q96N53 147 aa11.27□□□□□ -0.61
CPSF4-201ENST00000292476 TMEM126AQ9H061 195 aa11.26□□□□□ -0.61
CPSF4-201ENST00000292476 KMT2CQ8NEZ4 4911 aaKnown RBP11.25□□□□□ -0.61
CPSF4-201ENST00000292476 LECT2O14960 151 aa11.24□□□□□ -0.61
CPSF4-201ENST00000292476 APLNQ9ULZ1 77 aa11.24□□□□□ -0.61
CPSF4-201ENST00000292476 C1orf43Q9BWL3 253 aa11.23□□□□□ -0.61
CPSF4-201ENST00000292476 ORMDL1Q9P0S3 153 aa11.23□□□□□ -0.61
CPSF4-201ENST00000292476 GVQW2A0A096LPI5 108 aaPredicted RBP11.21□□□□□ -0.61
CPSF4-201ENST00000292476 SPAG11BQ08648 103 aa11.21□□□□□ -0.61
CPSF4-201ENST00000292476 UBE2DNLQ8IWF7 75 aa11.21□□□□□ -0.61
CPSF4-201ENST00000292476 RMI2Q96E14 147 aa11.21□□□□□ -0.61
CPSF4-201ENST00000292476 TENM2Q9NT68 2774 aa11.2□□□□□ -0.62
CPSF4-201ENST00000292476 SMCR5Q8TEV8 140 aa11.2□□□□□ -0.62
CPSF4-201ENST00000292476 GAGE2AQ6NT46 116 aa11.18□□□□□ -0.62
CPSF4-201ENST00000292476 Q8N814 137 aa11.17□□□□□ -0.62
CPSF4-201ENST00000292476 IGKV2D-24A0A075B6R9 120 aa11.17□□□□□ -0.62
CPSF4-201ENST00000292476 JMJD7-PLA2G4BH0Y9G9 81 aa11.16□□□□□ -0.62
CPSF4-201ENST00000292476 TMEM256-PLSCR3K7ERE1 68 aa11.15□□□□□ -0.62
CPSF4-201ENST00000292476 C9orf116Q5BN46 136 aaPredicted RBP11.15□□□□□ -0.62
CPSF4-201ENST00000292476 DYNC2H1Q8NCM8 4307 aaKnown RBP11.15□□□□□ -0.62
CPSF4-201ENST00000292476 F8WDY8 70 aa11.14□□□□□ -0.63
CPSF4-201ENST00000292476 PLECQ15149 4684 aaKnown RBP11.14□□□□□ -0.63
CPSF4-201ENST00000292476 KRTAP26-1Q6PEX3 210 aa11.14□□□□□ -0.63
CPSF4-201ENST00000292476 UNQ6190/PRO20217Q6UXQ8 127 aa11.14□□□□□ -0.63
CPSF4-201ENST00000292476 S100A7L2Q5SY68 101 aa11.14□□□□□ -0.63
CPSF4-201ENST00000292476 C14orf132Q9NPU4 83 aa11.14□□□□□ -0.63
CPSF4-201ENST00000292476 ZNF561-AS1K7EIQ3 104 aa11.13□□□□□ -0.63
CPSF4-201ENST00000292476 PRR3P79522 188 aaKnown RBP11.13□□□□□ -0.63
CPSF4-201ENST00000292476 C10orf25Q5T742 122 aa11.13□□□□□ -0.63
CPSF4-201ENST00000292476 LCE6AA0A183 80 aa11.12□□□□□ -0.63
CPSF4-201ENST00000292476 H3BQ85 93 aa11.12□□□□□ -0.63
CPSF4-201ENST00000292476 C9orf129Q5T035 196 aaKnown RBP11.12□□□□□ -0.63
CPSF4-201ENST00000292476 RYR3Q15413 4870 aa11.12□□□□□ -0.63
CPSF4-201ENST00000292476 LYSTQ99698 3801 aa11.12□□□□□ -0.63
CPSF4-201ENST00000292476 SACSQ9NZJ4 4579 aa11.12□□□□□ -0.63
CPSF4-201ENST00000292476 NCR3O14931 201 aa11.11□□□□□ -0.63
CPSF4-201ENST00000292476 IGLV6-57P01721 117 aa11.11□□□□□ -0.63
CPSF4-201ENST00000292476 C6orf223Q8N319 242 aa11.11□□□□□ -0.63
CPSF4-201ENST00000292476 SLPIP03973 132 aa11.11□□□□□ -0.63
CPSF4-201ENST00000292476 C6orf99Q4VX62 202 aa11.11□□□□□ -0.63
CPSF4-201ENST00000292476 Q6JHZ5 121 aa11.11□□□□□ -0.63
CPSF4-201ENST00000292476 LINC00575Q6W349 94 aa11.11□□□□□ -0.63
CPSF4-201ENST00000292476 Q8NDZ9 215 aa11.11□□□□□ -0.63
CPSF4-201ENST00000292476 CCKP06307 115 aa11.1□□□□□ -0.63
CPSF4-201ENST00000292476 C2orf48Q96LS8 159 aa11.09□□□□□ -0.63
CPSF4-201ENST00000292476 FAM236AA0A1B0GUQ0 79 aa11.08□□□□□ -0.64
CPSF4-201ENST00000292476 FAM236BA0A1B0GV22 79 aa11.08□□□□□ -0.64
CPSF4-201ENST00000292476 C6orf48Q9UBA6 75 aa11.08□□□□□ -0.64
CPSF4-201ENST00000292476 RYR2Q92736 4967 aa11.06□□□□□ -0.64
CPSF4-201ENST00000292476 ALMS1Q8TCU4 4167 aa11.06□□□□□ -0.64
CPSF4-201ENST00000292476 CCDC179H3BU77 68 aa11.06□□□□□ -0.64
CPSF4-201ENST00000292476 CAMK2N2Q96S95 79 aa11.06□□□□□ -0.64
CPSF4-201ENST00000292476 hADV29S1A0JD25 119 aa11.05□□□□□ -0.64
CPSF4-201ENST00000292476 LY6G6CO95867 125 aa11.05□□□□□ -0.64
CPSF4-201ENST00000292476 C15orf56Q8N910 161 aa11.05□□□□□ -0.64
CPSF4-201ENST00000292476 LINC00476Q8WZB0 136 aa11.05□□□□□ -0.64
CPSF4-201ENST00000292476 LINC00846Q9NV44 126 aa11.05□□□□□ -0.64
CPSF4-201ENST00000292476 TRBV7-6A0A0J9YX20 115 aa11.04□□□□□ -0.64
CPSF4-201ENST00000292476 HIST1H4AP62805 103 aaKnown RBP11.04□□□□□ -0.64
CPSF4-201ENST00000292476 ATP5EP2Q5VTU8 51 aa11.04□□□□□ -0.64
CPSF4-201ENST00000292476 DNAH1Q9P2D7 4330 aa11.03□□□□□ -0.64
CPSF4-201ENST00000292476 B5MCH6 92 aa11.03□□□□□ -0.64
CPSF4-201ENST00000292476 RPL18AQ02543 176 aaKnown RBP11.03□□□□□ -0.64
CPSF4-201ENST00000292476 HIGD2BQ4VC39 106 aa11.03□□□□□ -0.64
CPSF4-201ENST00000292476 LINC00526Q96FQ7 95 aa11.03□□□□□ -0.64
CPSF4-201ENST00000292476 HYDINQ4G0P3 5121 aa11.03□□□□□ -0.64
CPSF4-201ENST00000292476 NBDYA0A0U1RRE5 68 aa11.01□□□□□ -0.65
CPSF4-201ENST00000292476 GHRHP01286 108 aa11.01□□□□□ -0.65
CPSF4-201ENST00000292476 DIRC1Q969H9 104 aa11.01□□□□□ -0.65
CPSF4-201ENST00000292476 TRAV23DV6A0A075B6W5 121 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 237.4 ms