RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 C1orf64Q8NEQ6 169 aa5.67□□□□□ -1.5
LIMD1-201ENST00000273317 LY6G6CO95867 125 aa5.67□□□□□ -1.5
LIMD1-201ENST00000273317 C6orf223Q8N319 242 aa5.67□□□□□ -1.5
LIMD1-201ENST00000273317 H3BPC8 53 aa5.66□□□□□ -1.5
LIMD1-201ENST00000273317 PRR3P79522 188 aaKnown RBP5.66□□□□□ -1.5
LIMD1-201ENST00000273317 A0A096LNJ9 63 aa5.66□□□□□ -1.5
LIMD1-201ENST00000273317 IGLV4-60A0A075B6I1 120 aa5.66□□□□□ -1.5
LIMD1-201ENST00000273317 RPS28P62857 69 aaKnown RBP5.66□□□□□ -1.5
LIMD1-201ENST00000273317 LINC00337Q8N6G1 96 aa5.65□□□□□ -1.5
LIMD1-201ENST00000273317 A0A087WSZ3 146 aa5.65□□□□□ -1.5
LIMD1-201ENST00000273317 CDIP1Q9H305 208 aa5.65□□□□□ -1.51
LIMD1-201ENST00000273317 MDFIQ99750 246 aa5.65□□□□□ -1.51
LIMD1-201ENST00000273317 LINC01556Q5JQF7 62 aa5.65□□□□□ -1.51
LIMD1-201ENST00000273317 LINC00846Q9NV44 126 aa5.65□□□□□ -1.51
LIMD1-201ENST00000273317 GCN1Q92616 2671 aaKnown RBP5.64□□□□□ -1.51
LIMD1-201ENST00000273317 LOC110117498A0A087WWA1 95 aa5.64□□□□□ -1.51
LIMD1-201ENST00000273317 VPREB1P12018 145 aa5.64□□□□□ -1.51
LIMD1-201ENST00000273317 NOTCH1P46531 2555 aa5.63□□□□□ -1.51
LIMD1-201ENST00000273317 STAB2Q8WWQ8 2551 aa5.62□□□□□ -1.51
LIMD1-201ENST00000273317 ACYP2P14621 99 aa5.62□□□□□ -1.51
LIMD1-201ENST00000273317 LYPD5Q6UWN5 251 aa5.62□□□□□ -1.51
LIMD1-201ENST00000273317 Q6ZTC4 211 aa5.62□□□□□ -1.51
LIMD1-201ENST00000273317 COL4A2P08572 1712 aa5.62□□□□□ -1.51
LIMD1-201ENST00000273317 SPAG11AQ6PDA7 123 aa5.62□□□□□ -1.51
LIMD1-201ENST00000273317 CENPFP49454 3210 aa5.62□□□□□ -1.51
LIMD1-201ENST00000273317 IGLV5-45A0A087WSX0 123 aa5.62□□□□□ -1.51
LIMD1-201ENST00000273317 Q6ZSN1 163 aa5.61□□□□□ -1.51
LIMD1-201ENST00000273317 C7orf65Q6ZTY9 151 aa5.61□□□□□ -1.51
LIMD1-201ENST00000273317 FSHBP01225 129 aa5.61□□□□□ -1.51
LIMD1-201ENST00000273317 C11orf72Q8NBR9 251 aa5.6□□□□□ -1.51
LIMD1-201ENST00000273317 C10orf142B7Z368 130 aa5.6□□□□□ -1.51
LIMD1-201ENST00000273317 C1orf134Q5TEV5 83 aa5.6□□□□□ -1.51
LIMD1-201ENST00000273317 A0A1B0GU69 56 aa5.6□□□□□ -1.51
LIMD1-201ENST00000273317 SPATA3Q8NHX4 192 aa5.6□□□□□ -1.51
LIMD1-201ENST00000273317 IGKV2D-30A0A075B6S6 120 aa5.59□□□□□ -1.51
LIMD1-201ENST00000273317 IGKV2-30P06310 120 aa5.59□□□□□ -1.51
LIMD1-201ENST00000273317 EDN2P20800 178 aa5.59□□□□□ -1.51
LIMD1-201ENST00000273317 SMIM29Q86T20 159 aa5.59□□□□□ -1.51
LIMD1-201ENST00000273317 NHLRC4P0CG21 123 aaPredicted RBP5.59□□□□□ -1.51
LIMD1-201ENST00000273317 KIF25-AS1Q9Y6Z4 181 aa5.59□□□□□ -1.52
LIMD1-201ENST00000273317 ERC2-IT1O76042 136 aa5.58□□□□□ -1.52
LIMD1-201ENST00000273317 C6orf48Q9UBA6 75 aa5.58□□□□□ -1.52
LIMD1-201ENST00000273317 A8MTW9 85 aa5.58□□□□□ -1.52
LIMD1-201ENST00000273317 AVPP01185 164 aa5.58□□□□□ -1.52
LIMD1-201ENST00000273317 PRO3102Q9H379 93 aa5.58□□□□□ -1.52
LIMD1-201ENST00000273317 FAM19A4Q96LR4 140 aa5.57□□□□□ -1.52
LIMD1-201ENST00000273317 IGHV3OR16-9A0A0B4J2B5 98 aa5.57□□□□□ -1.52
LIMD1-201ENST00000273317 Q6ZRU5 148 aa5.57□□□□□ -1.52
LIMD1-201ENST00000273317 ELOF1P60002 83 aaKnown RBP5.56□□□□□ -1.52
LIMD1-201ENST00000273317 OXLD1Q5BKU9 147 aa5.56□□□□□ -1.52
LIMD1-201ENST00000273317 KIAA0087Q14695 138 aa5.56□□□□□ -1.52
LIMD1-201ENST00000273317 SSBP3-AS1Q7Z2R9 100 aa5.56□□□□□ -1.52
LIMD1-201ENST00000273317 TRAV22A0A0B4J277 110 aa5.56□□□□□ -1.52
LIMD1-201ENST00000273317 H3BNG1 76 aa5.56□□□□□ -1.52
LIMD1-201ENST00000273317 Q6ZQT0 140 aa5.56□□□□□ -1.52
LIMD1-201ENST00000273317 C22orf24Q9Y442 160 aa5.56□□□□□ -1.52
LIMD1-201ENST00000273317 PRO0461Q9UI25 63 aa5.56□□□□□ -1.52
LIMD1-201ENST00000273317 C8orf87E5RJ46 101 aa5.55□□□□□ -1.52
LIMD1-201ENST00000273317 SMCR5Q8TEV8 140 aa5.55□□□□□ -1.52
LIMD1-201ENST00000273317 Q6ZRX8 168 aa5.55□□□□□ -1.52
LIMD1-201ENST00000273317 MAP1AP78559 2803 aaPredicted RBP5.55□□□□□ -1.52
LIMD1-201ENST00000273317 MOBPQ13875 183 aa5.55□□□□□ -1.52
LIMD1-201ENST00000273317 Q8NBF4 154 aa5.54□□□□□ -1.52
LIMD1-201ENST00000273317 FHL3Q13643 280 aa5.54□□□□□ -1.52
LIMD1-201ENST00000273317 UNC79Q9P2D8 2635 aa5.54□□□□□ -1.52
LIMD1-201ENST00000273317 DNAH12Q6ZR08 3092 aa5.53□□□□□ -1.52
LIMD1-201ENST00000273317 FLNBO75369 2602 aaKnown RBP5.53□□□□□ -1.52
LIMD1-201ENST00000273317 CDSNQ15517 529 aa5.53□□□□□ -1.52
LIMD1-201ENST00000273317 CEP350Q5VT06 3117 aa5.52□□□□□ -1.53
LIMD1-201ENST00000273317 LOC101927531A0A1B0GV80 90 aa5.52□□□□□ -1.53
LIMD1-201ENST00000273317 SMCPP49901 116 aaPredicted RBP5.51□□□□□ -1.53
LIMD1-201ENST00000273317 FAM218AQ96MZ4 157 aa5.5□□□□□ -1.53
LIMD1-201ENST00000273317 CFAP46Q8IYW2 2715 aa5.5□□□□□ -1.53
LIMD1-201ENST00000273317 GVQW2A0A096LPI5 108 aaPredicted RBP5.5□□□□□ -1.53
LIMD1-201ENST00000273317 LINC00167Q96N53 147 aa5.5□□□□□ -1.53
LIMD1-201ENST00000273317 TRBV7-4A0A0J9YYF1 115 aa5.5□□□□□ -1.53
LIMD1-201ENST00000273317 LINC00315P59091 139 aa5.5□□□□□ -1.53
LIMD1-201ENST00000273317 ATP11AUNQ6ZP68 121 aa5.5□□□□□ -1.53
LIMD1-201ENST00000273317 CYP4F30PQ9H0H9 118 aa5.5□□□□□ -1.53
LIMD1-201ENST00000273317 MGAM2Q2M2H8 2515 aa5.49□□□□□ -1.53
LIMD1-201ENST00000273317 COL6A5A8TX70 2615 aa5.49□□□□□ -1.53
LIMD1-201ENST00000273317 C16orf90A8MZG2 172 aa5.49□□□□□ -1.53
LIMD1-201ENST00000273317 UTP20O75691 2785 aaKnown RBP5.49□□□□□ -1.53
LIMD1-201ENST00000273317 LINC00476Q8WZB0 136 aa5.48□□□□□ -1.53
LIMD1-201ENST00000273317 STAB1Q9NY15 2570 aa5.47□□□□□ -1.53
LIMD1-201ENST00000273317 LINC00313P59037 77 aa5.47□□□□□ -1.53
LIMD1-201ENST00000273317 A8MWP4 228 aa5.47□□□□□ -1.53
LIMD1-201ENST00000273317 IGLV6-57P01721 117 aa5.47□□□□□ -1.53
LIMD1-201ENST00000273317 EPM2AB3EWF7 344 aa5.46□□□□□ -1.53
LIMD1-201ENST00000273317 FAM229AH3BQW9 127 aa5.46□□□□□ -1.53
LIMD1-201ENST00000273317 Q6ZRP5 223 aa5.46□□□□□ -1.53
LIMD1-201ENST00000273317 SPACA4Q8TDM5 124 aa5.46□□□□□ -1.54
LIMD1-201ENST00000273317 SMR3AQ99954 134 aa5.46□□□□□ -1.54
LIMD1-201ENST00000273317 HELZ2Q9BYK8 2649 aaKnown RBP5.45□□□□□ -1.54
LIMD1-201ENST00000273317 KRTAP10-9P60411 292 aa5.45□□□□□ -1.54
LIMD1-201ENST00000273317 TM2D3Q9BRN9 247 aa5.45□□□□□ -1.54
LIMD1-201ENST00000273317 DMBT1Q9UGM3 2413 aaPredicted RBP5.45□□□□□ -1.54
LIMD1-201ENST00000273317 A0A1W2PPR1 153 aa5.44□□□□□ -1.54
LIMD1-201ENST00000273317 WIPF1O43516 503 aa5.44□□□□□ -1.54
LIMD1-201ENST00000273317 BRCA2P51587 3418 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 96.6 ms