RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 C11orf86A6NJI1 115 aa12.94□□□□□ -0.34
PTCD3-220ENST00000627371 ZNF22P17026 224 aaPredicted RBP12.94□□□□□ -0.34
PTCD3-220ENST00000627371 HSPB8Q9UJY1 196 aa12.94□□□□□ -0.34
PTCD3-220ENST00000627371 IGKV2-24A0A0C4DH68 120 aa12.93□□□□□ -0.34
PTCD3-220ENST00000627371 SPINK8P0C7L1 97 aa12.93□□□□□ -0.34
PTCD3-220ENST00000627371 C6orf226Q5I0X4 101 aa12.93□□□□□ -0.34
PTCD3-220ENST00000627371 C2orf82Q6UX34 121 aa12.93□□□□□ -0.34
PTCD3-220ENST00000627371 C6orf48Q9UBA6 75 aa12.93□□□□□ -0.34
PTCD3-220ENST00000627371 F8VRH5 84 aa12.92□□□□□ -0.34
PTCD3-220ENST00000627371 SMR3BP02814 79 aaPredicted RBP12.92□□□□□ -0.34
PTCD3-220ENST00000627371 TRBV30A0A0K0K1B3 111 aa12.91□□□□□ -0.34
PTCD3-220ENST00000627371 FABP4P15090 132 aa12.91□□□□□ -0.34
PTCD3-220ENST00000627371 CKS1BP61024 79 aa12.91□□□□□ -0.34
PTCD3-220ENST00000627371 COA6Q5JTJ3 125 aaKnown RBP12.91□□□□□ -0.34
PTCD3-220ENST00000627371 COX7B2Q8TF08 81 aa12.91□□□□□ -0.34
PTCD3-220ENST00000627371 LINC00474Q9P2X8 69 aa12.91□□□□□ -0.34
PTCD3-220ENST00000627371 CXCL5P42830 114 aa12.9□□□□□ -0.34
PTCD3-220ENST00000627371 PTTG1IPP53801 180 aa12.9□□□□□ -0.34
PTCD3-220ENST00000627371 MAJINQ3KP22 176 aa12.9□□□□□ -0.34
PTCD3-220ENST00000627371 A0A087WYN8 130 aa12.89□□□□□ -0.35
PTCD3-220ENST00000627371 H0Y8G0 127 aa12.89□□□□□ -0.35
PTCD3-220ENST00000627371 TLX1NBP0CAT3 122 aa12.89□□□□□ -0.35
PTCD3-220ENST00000627371 ODF1Q14990 250 aa12.89□□□□□ -0.35
PTCD3-220ENST00000627371 TMEM170BQ5T4T1 132 aa12.89□□□□□ -0.35
PTCD3-220ENST00000627371 DPH3Q96FX2 82 aa12.89□□□□□ -0.35
PTCD3-220ENST00000627371 IGLV5-39A0A0G2JS06 123 aa12.88□□□□□ -0.35
PTCD3-220ENST00000627371 RPL18AQ02543 176 aaKnown RBP12.88□□□□□ -0.35
PTCD3-220ENST00000627371 GAGE2BQ13066 116 aa12.88□□□□□ -0.35
PTCD3-220ENST00000627371 EPM2AB3EWF7 344 aa12.87□□□□□ -0.35
PTCD3-220ENST00000627371 PLAC8Q9NZF1 115 aa12.87□□□□□ -0.35
PTCD3-220ENST00000627371 Q5VSD8 79 aa12.86□□□□□ -0.35
PTCD3-220ENST00000627371 LINC00528Q8N1L1 170 aa12.86□□□□□ -0.35
PTCD3-220ENST00000627371 KRTAP4-5Q9BYR2 181 aa12.86□□□□□ -0.35
PTCD3-220ENST00000627371 STPG4Q8N801 248 aa12.85□□□□□ -0.35
PTCD3-220ENST00000627371 MAP1LC3CQ9BXW4 147 aa12.85□□□□□ -0.35
PTCD3-220ENST00000627371 VPS13BQ7Z7G8 4022 aa12.85□□□□□ -0.35
PTCD3-220ENST00000627371 FAM229AH3BQW9 127 aa12.84□□□□□ -0.35
PTCD3-220ENST00000627371 C9orf116Q5BN46 136 aaPredicted RBP12.84□□□□□ -0.35
PTCD3-220ENST00000627371 Q6ZRP5 223 aa12.84□□□□□ -0.35
PTCD3-220ENST00000627371 TMEM223A0PJW6 202 aa12.83□□□□□ -0.36
PTCD3-220ENST00000627371 NDUFC2-KCTD14E9PQ53 114 aa12.83□□□□□ -0.36
PTCD3-220ENST00000627371 PLNP26678 52 aa12.81□□□□□ -0.36
PTCD3-220ENST00000627371 ABCA13Q86UQ4 5058 aa12.81□□□□□ -0.36
PTCD3-220ENST00000627371 SYS1-DBNDD2H3BUS1 97 aa12.79□□□□□ -0.36
PTCD3-220ENST00000627371 DPM2O94777 84 aa12.79□□□□□ -0.36
PTCD3-220ENST00000627371 GAGE2EQ4V326 116 aa12.79□□□□□ -0.36
PTCD3-220ENST00000627371 PMCHL2Q9BQD1 86 aa12.79□□□□□ -0.36
PTCD3-220ENST00000627371 GAGE2DQ9UEU5 116 aa12.79□□□□□ -0.36
PTCD3-220ENST00000627371 IGKCP01834 107 aa12.77□□□□□ -0.37
PTCD3-220ENST00000627371 PLA2G1BP04054 148 aaKnown RBP12.77□□□□□ -0.37
PTCD3-220ENST00000627371 A0A1W2PNN7 141 aa12.76□□□□□ -0.37
PTCD3-220ENST00000627371 SFTA2Q6UW10 78 aa12.76□□□□□ -0.37
PTCD3-220ENST00000627371 PET117Q6UWS5 81 aa12.74□□□□□ -0.37
PTCD3-220ENST00000627371 ZNF625Q96I27 306 aaPredicted RBP12.74□□□□□ -0.37
PTCD3-220ENST00000627371 SRRM2Q9UQ35 2752 aaKnown RBP12.73□□□□□ -0.37
PTCD3-220ENST00000627371 C3orf79P0CE67 100 aa12.73□□□□□ -0.37
PTCD3-220ENST00000627371 RPL37AP61513 92 aaKnown RBP12.73□□□□□ -0.37
PTCD3-220ENST00000627371 C9orf129Q5T035 196 aaKnown RBP12.73□□□□□ -0.37
PTCD3-220ENST00000627371 LINC01545Q5VT33 79 aa12.73□□□□□ -0.37
PTCD3-220ENST00000627371 C7orf33Q8WU49 177 aa12.73□□□□□ -0.37
PTCD3-220ENST00000627371 FAM168BA1KXE4 195 aa12.72□□□□□ -0.37
PTCD3-220ENST00000627371 KRTAP10-4P60372 401 aaPredicted RBP12.72□□□□□ -0.37
PTCD3-220ENST00000627371 PCLOQ9Y6V0 5065 aa12.72□□□□□ -0.37
PTCD3-220ENST00000627371 HERVK_113P61574 105 aa12.71□□□□□ -0.37
PTCD3-220ENST00000627371 S100A6P06703 90 aa12.7□□□□□ -0.38
PTCD3-220ENST00000627371 KRTDAPP60985 99 aa12.7□□□□□ -0.38
PTCD3-220ENST00000627371 HIST3H2BBQ8N257 126 aa12.7□□□□□ -0.38
PTCD3-220ENST00000627371 XAGE1AQ9HD64 81 aa12.7□□□□□ -0.38
PTCD3-220ENST00000627371 ERG28Q9UKR5 140 aa12.7□□□□□ -0.38
PTCD3-220ENST00000627371 LEPROTO15243 131 aa12.69□□□□□ -0.38
PTCD3-220ENST00000627371 COX17Q14061 63 aa12.69□□□□□ -0.38
PTCD3-220ENST00000627371 FAM19A5Q7Z5A7 132 aaPredicted RBP12.69□□□□□ -0.38
PTCD3-220ENST00000627371 PLEKHB2Q96CS7 222 aa12.69□□□□□ -0.38
PTCD3-220ENST00000627371 PFN2P35080 140 aa12.68□□□□□ -0.38
PTCD3-220ENST00000627371 KRTAP7-1Q8IUC3 87 aa12.68□□□□□ -0.38
PTCD3-220ENST00000627371 TSPEAR-AS2P59090 65 aa12.67□□□□□ -0.38
PTCD3-220ENST00000627371 INAFM2P0DMQ5 153 aa12.66□□□□□ -0.38
PTCD3-220ENST00000627371 S100A2P29034 98 aa12.66□□□□□ -0.38
PTCD3-220ENST00000627371 PHF5AQ7RTV0 110 aaKnown RBP12.66□□□□□ -0.38
PTCD3-220ENST00000627371 NDUFA12Q9UI09 145 aa12.66□□□□□ -0.38
PTCD3-220ENST00000627371 J3QQQ9 107 aa12.65□□□□□ -0.38
PTCD3-220ENST00000627371 HERV-K104P63124 156 aa12.65□□□□□ -0.38
PTCD3-220ENST00000627371 HIST1H2BLQ99880 126 aa12.65□□□□□ -0.38
PTCD3-220ENST00000627371 PKHD1L1Q86WI1 4243 aa12.65□□□□□ -0.38
PTCD3-220ENST00000627371 MYMXA0A1B0GTQ4 84 aa12.64□□□□□ -0.39
PTCD3-220ENST00000627371 C20orf202A1L168 122 aa12.64□□□□□ -0.39
PTCD3-220ENST00000627371 E9PLD3 99 aa12.64□□□□□ -0.39
PTCD3-220ENST00000627371 M0QXV9 152 aa12.64□□□□□ -0.39
PTCD3-220ENST00000627371 SERTAD4-AS1Q5TG53 156 aa12.64□□□□□ -0.39
PTCD3-220ENST00000627371 LGALS3P17931 250 aaKnown RBP12.62□□□□□ -0.39
PTCD3-220ENST00000627371 NMUP48645 174 aa12.62□□□□□ -0.39
PTCD3-220ENST00000627371 PRR3P79522 188 aaKnown RBP12.62□□□□□ -0.39
PTCD3-220ENST00000627371 PLA2G2DQ9UNK4 145 aa12.62□□□□□ -0.39
PTCD3-220ENST00000627371 SNRPEP62304 92 aaKnown RBP12.61□□□□□ -0.39
PTCD3-220ENST00000627371 MEIG1Q5JSS6 88 aa12.61□□□□□ -0.39
PTCD3-220ENST00000627371 SND1-IT1Q9HBX3 110 aa12.61□□□□□ -0.39
PTCD3-220ENST00000627371 LINC00158P58513 81 aa12.6□□□□□ -0.39
PTCD3-220ENST00000627371 FLG2Q5D862 2391 aaPredicted RBP12.59□□□□□ -0.39
PTCD3-220ENST00000627371 C5orf52A6NGY3 159 aa12.59□□□□□ -0.39
PTCD3-220ENST00000627371 LINC00587B1AMM8 73 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms