RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 PLNP26678 52 aa12.27□□□□□ -0.45
SQSTM1-216ENST00000626660 C2orf82Q6UX34 121 aa12.27□□□□□ -0.45
SQSTM1-216ENST00000626660 IGLV5-39A0A0G2JS06 123 aa12.26□□□□□ -0.45
SQSTM1-216ENST00000626660 TRBV30A0A0K0K1B3 111 aa12.26□□□□□ -0.45
SQSTM1-216ENST00000626660 LOC107984640A0A0U1RRK4 108 aa12.26□□□□□ -0.45
SQSTM1-216ENST00000626660 SYS1-DBNDD2H3BUS1 97 aa12.26□□□□□ -0.45
SQSTM1-216ENST00000626660 DPM2O94777 84 aa12.26□□□□□ -0.45
SQSTM1-216ENST00000626660 C10orf25Q5T742 122 aa12.26□□□□□ -0.45
SQSTM1-216ENST00000626660 S100A2P29034 98 aa12.25□□□□□ -0.45
SQSTM1-216ENST00000626660 PET117Q6UWS5 81 aa12.24□□□□□ -0.45
SQSTM1-216ENST00000626660 DPH3Q96FX2 82 aa12.24□□□□□ -0.45
SQSTM1-216ENST00000626660 PMCHL2Q9BQD1 86 aa12.24□□□□□ -0.45
SQSTM1-216ENST00000626660 C6orf48Q9UBA6 75 aa12.24□□□□□ -0.45
SQSTM1-216ENST00000626660 TMEM223A0PJW6 202 aa12.23□□□□□ -0.45
SQSTM1-216ENST00000626660 IGKCP01834 107 aa12.23□□□□□ -0.45
SQSTM1-216ENST00000626660 XGP55808 180 aa12.23□□□□□ -0.45
SQSTM1-216ENST00000626660 KRTDAPP60985 99 aa12.23□□□□□ -0.45
SQSTM1-216ENST00000626660 IGKV2-24A0A0C4DH68 120 aa12.22□□□□□ -0.45
SQSTM1-216ENST00000626660 C3orf79P0CE67 100 aa12.22□□□□□ -0.45
SQSTM1-216ENST00000626660 HAMPP81172 84 aa12.22□□□□□ -0.45
SQSTM1-216ENST00000626660 RPL18AQ02543 176 aaKnown RBP12.22□□□□□ -0.45
SQSTM1-216ENST00000626660 HIST3H2BBQ8N257 126 aa12.22□□□□□ -0.45
SQSTM1-216ENST00000626660 LINC00474Q9P2X8 69 aa12.22□□□□□ -0.45
SQSTM1-216ENST00000626660 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.22□□□□□ -0.45
SQSTM1-216ENST00000626660 A0A096LNI7 61 aa12.21□□□□□ -0.45
SQSTM1-216ENST00000626660 CHTF8P0CG12 524 aa12.21□□□□□ -0.45
SQSTM1-216ENST00000626660 GAGE2BQ13066 116 aa12.21□□□□□ -0.45
SQSTM1-216ENST00000626660 HERVK_113P61574 105 aa12.2□□□□□ -0.46
SQSTM1-216ENST00000626660 CIRBPQ14011 172 aaKnown RBP12.2□□□□□ -0.46
SQSTM1-216ENST00000626660 MAJINQ3KP22 176 aa12.2□□□□□ -0.46
SQSTM1-216ENST00000626660 LINC01545Q5VT33 79 aa12.2□□□□□ -0.46
SQSTM1-216ENST00000626660 SCXQ7RTU7 201 aa12.2□□□□□ -0.46
SQSTM1-216ENST00000626660 SPACA4Q8TDM5 124 aa12.2□□□□□ -0.46
SQSTM1-216ENST00000626660 C20orf202A1L168 122 aa12.19□□□□□ -0.46
SQSTM1-216ENST00000626660 PANO1I0J062 215 aa12.19□□□□□ -0.46
SQSTM1-216ENST00000626660 PTTG1IPP53801 180 aa12.19□□□□□ -0.46
SQSTM1-216ENST00000626660 APOBP04114 4563 aaKnown RBP12.19□□□□□ -0.46
SQSTM1-216ENST00000626660 DNAH8Q96JB1 4490 aa12.19□□□□□ -0.46
SQSTM1-216ENST00000626660 TLX1NBP0CAT3 122 aa12.18□□□□□ -0.46
SQSTM1-216ENST00000626660 SNRPEP62304 92 aaKnown RBP12.18□□□□□ -0.46
SQSTM1-216ENST00000626660 SFTA2Q6UW10 78 aa12.18□□□□□ -0.46
SQSTM1-216ENST00000626660 CIRBP-AS1Q8TBR5 109 aa12.18□□□□□ -0.46
SQSTM1-216ENST00000626660 HIST1H2BLQ99880 126 aa12.18□□□□□ -0.46
SQSTM1-216ENST00000626660 NDUFC2-KCTD14E9PQ53 114 aa12.17□□□□□ -0.46
SQSTM1-216ENST00000626660 C9orf116Q5BN46 136 aaPredicted RBP12.17□□□□□ -0.46
SQSTM1-216ENST00000626660 KRTAP4-5Q9BYR2 181 aa12.17□□□□□ -0.46
SQSTM1-216ENST00000626660 ABCA13Q86UQ4 5058 aa12.17□□□□□ -0.46
SQSTM1-216ENST00000626660 A0A087WYN8 130 aa12.15□□□□□ -0.46
SQSTM1-216ENST00000626660 PLEKHB2Q96CS7 222 aa12.15□□□□□ -0.46
SQSTM1-216ENST00000626660 C5orf52A6NGY3 159 aa12.14□□□□□ -0.47
SQSTM1-216ENST00000626660 GAGE2EQ4V326 116 aa12.14□□□□□ -0.47
SQSTM1-216ENST00000626660 Q6ZRP5 223 aa12.14□□□□□ -0.47
SQSTM1-216ENST00000626660 STPG4Q8N801 248 aa12.14□□□□□ -0.47
SQSTM1-216ENST00000626660 GAGE2DQ9UEU5 116 aa12.14□□□□□ -0.47
SQSTM1-216ENST00000626660 LEPROTO15243 131 aa12.13□□□□□ -0.47
SQSTM1-216ENST00000626660 AKR1D1P51857 326 aa12.13□□□□□ -0.47
SQSTM1-216ENST00000626660 PLAC8Q9NZF1 115 aa12.13□□□□□ -0.47
SQSTM1-216ENST00000626660 SMR3BP02814 79 aaPredicted RBP12.12□□□□□ -0.47
SQSTM1-216ENST00000626660 ZNF625Q96I27 306 aaPredicted RBP12.11□□□□□ -0.47
SQSTM1-216ENST00000626660 HSPG2P98160 4391 aa12.11□□□□□ -0.47
SQSTM1-216ENST00000626660 NDUFA12Q9UI09 145 aa12.1□□□□□ -0.47
SQSTM1-216ENST00000626660 MYMXA0A1B0GTQ4 84 aa12.09□□□□□ -0.47
SQSTM1-216ENST00000626660 J3QQQ9 107 aa12.09□□□□□ -0.47
SQSTM1-216ENST00000626660 LGALS3P17931 250 aaKnown RBP12.09□□□□□ -0.47
SQSTM1-216ENST00000626660 HERV-K104P63124 156 aa12.09□□□□□ -0.47
SQSTM1-216ENST00000626660 Q8N1X5 172 aa12.09□□□□□ -0.47
SQSTM1-216ENST00000626660 ERG28Q9UKR5 140 aa12.09□□□□□ -0.47
SQSTM1-216ENST00000626660 E9PLD3 99 aa12.08□□□□□ -0.48
SQSTM1-216ENST00000626660 FAM229AH3BQW9 127 aa12.08□□□□□ -0.48
SQSTM1-216ENST00000626660 PFN2P35080 140 aa12.08□□□□□ -0.48
SQSTM1-216ENST00000626660 NMUP48645 174 aa12.07□□□□□ -0.48
SQSTM1-216ENST00000626660 TSPEAR-AS2P59090 65 aa12.07□□□□□ -0.48
SQSTM1-216ENST00000626660 COX17Q14061 63 aa12.07□□□□□ -0.48
SQSTM1-216ENST00000626660 LINC00528Q8N1L1 170 aa12.07□□□□□ -0.48
SQSTM1-216ENST00000626660 XAGE1AQ9HD64 81 aa12.06□□□□□ -0.48
SQSTM1-216ENST00000626660 MEIG1Q5JSS6 88 aa12.05□□□□□ -0.48
SQSTM1-216ENST00000626660 TMA7Q9Y2S6 64 aaKnown RBP12.05□□□□□ -0.48
SQSTM1-216ENST00000626660 A0A1W2PNN7 141 aa12.04□□□□□ -0.48
SQSTM1-216ENST00000626660 LINC00587B1AMM8 73 aa12.04□□□□□ -0.48
SQSTM1-216ENST00000626660 EPM2AB3EWF7 344 aa12.04□□□□□ -0.48
SQSTM1-216ENST00000626660 LINC00158P58513 81 aa12.04□□□□□ -0.48
SQSTM1-216ENST00000626660 C9orf129Q5T035 196 aaKnown RBP12.04□□□□□ -0.48
SQSTM1-216ENST00000626660 ATOH7Q8N100 152 aa12.04□□□□□ -0.48
SQSTM1-216ENST00000626660 C7orf33Q8WU49 177 aa12.04□□□□□ -0.48
SQSTM1-216ENST00000626660 Q5VSD8 79 aa12.03□□□□□ -0.48
SQSTM1-216ENST00000626660 FAM19A5Q7Z5A7 132 aaPredicted RBP12.03□□□□□ -0.48
SQSTM1-216ENST00000626660 FAM168BA1KXE4 195 aa12.02□□□□□ -0.49
SQSTM1-216ENST00000626660 PLA2G1BP04054 148 aaKnown RBP12.01□□□□□ -0.49
SQSTM1-216ENST00000626660 A0A0U1RRA0 63 aa12□□□□□ -0.49
SQSTM1-216ENST00000626660 SCGB1D1O95968 90 aa12□□□□□ -0.49
SQSTM1-216ENST00000626660 SMIM13P0DJ93 91 aa12□□□□□ -0.49
SQSTM1-216ENST00000626660 SND1-IT1Q9HBX3 110 aa11.99□□□□□ -0.49
SQSTM1-216ENST00000626660 HSBP1L1C9JCN9 74 aa11.98□□□□□ -0.49
SQSTM1-216ENST00000626660 M0QXV9 152 aa11.98□□□□□ -0.49
SQSTM1-216ENST00000626660 RPL37AP61513 92 aaKnown RBP11.98□□□□□ -0.49
SQSTM1-216ENST00000626660 IGKV2D-26A0A0A0MRZ7 120 aa11.97□□□□□ -0.49
SQSTM1-216ENST00000626660 ANKRD39Q53RE8 183 aa11.97□□□□□ -0.49
SQSTM1-216ENST00000626660 ZNF815PA8K554 130 aa11.96□□□□□ -0.49
SQSTM1-216ENST00000626660 SERTAD4-AS1Q5TG53 156 aa11.96□□□□□ -0.49
SQSTM1-216ENST00000626660 PHF5AQ7RTV0 110 aaKnown RBP11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms