RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 BLCAPP62952 87 aa7.7□□□□□ -1.18
UPF3A-212ENST00000619079 TMEM89A2RUT3 159 aa7.7□□□□□ -1.18
UPF3A-212ENST00000619079 PSMB8P28062 276 aa7.7□□□□□ -1.18
UPF3A-212ENST00000619079 TMEM243Q9BU79 118 aa7.7□□□□□ -1.18
UPF3A-212ENST00000619079 MXRA5Q9NR99 2828 aa7.7□□□□□ -1.18
UPF3A-212ENST00000619079 FAM236DA0A1B0GTK5 79 aa7.69□□□□□ -1.18
UPF3A-212ENST00000619079 NCR3O14931 201 aa7.69□□□□□ -1.18
UPF3A-212ENST00000619079 BCE1O60756 84 aa7.69□□□□□ -1.18
UPF3A-212ENST00000619079 FAM236CP0DP71 79 aa7.69□□□□□ -1.18
UPF3A-212ENST00000619079 CDC42SE2Q9NRR3 84 aa7.69□□□□□ -1.18
UPF3A-212ENST00000619079 SERP1Q9Y6X1 66 aa7.69□□□□□ -1.18
UPF3A-212ENST00000619079 COX7B2Q8TF08 81 aa7.68□□□□□ -1.18
UPF3A-212ENST00000619079 TRBV10-1A0A0K0K1A3 114 aa7.68□□□□□ -1.18
UPF3A-212ENST00000619079 RPL36AP83881 106 aaKnown RBP7.68□□□□□ -1.18
UPF3A-212ENST00000619079 C11orf72Q8NBR9 251 aa7.68□□□□□ -1.18
UPF3A-212ENST00000619079 RPL36ALQ969Q0 106 aaKnown RBP7.68□□□□□ -1.18
UPF3A-212ENST00000619079 PRO0628Q9UI54 55 aa7.68□□□□□ -1.18
UPF3A-212ENST00000619079 PFN2P35080 140 aa7.67□□□□□ -1.18
UPF3A-212ENST00000619079 LINC00158P58513 81 aa7.67□□□□□ -1.18
UPF3A-212ENST00000619079 LYPD5Q6UWN5 251 aa7.67□□□□□ -1.18
UPF3A-212ENST00000619079 JMJD1CQ15652 2540 aa7.67□□□□□ -1.18
UPF3A-212ENST00000619079 IBA57-AS1B1ANH7 110 aa7.67□□□□□ -1.18
UPF3A-212ENST00000619079 IGHV4-59P01825 116 aa7.67□□□□□ -1.18
UPF3A-212ENST00000619079 EPM2AB3EWF7 344 aa7.66□□□□□ -1.18
UPF3A-212ENST00000619079 Q6YL49 198 aa7.66□□□□□ -1.18
UPF3A-212ENST00000619079 UBL5Q9BZL1 73 aa7.66□□□□□ -1.18
UPF3A-212ENST00000619079 SETD2Q9BYW2 2564 aaPredicted RBP7.66□□□□□ -1.18
UPF3A-212ENST00000619079 TRAV23DV6A0A075B6W5 121 aa7.66□□□□□ -1.18
UPF3A-212ENST00000619079 CCL18P55774 89 aa7.66□□□□□ -1.18
UPF3A-212ENST00000619079 C20orf197Q8N268 126 aa7.66□□□□□ -1.18
UPF3A-212ENST00000619079 DNAJC9-AS1A6NH13 148 aa7.65□□□□□ -1.18
UPF3A-212ENST00000619079 UBE2L6O14933 153 aa7.65□□□□□ -1.18
UPF3A-212ENST00000619079 XCL1P47992 114 aa7.65□□□□□ -1.18
UPF3A-212ENST00000619079 DEFB131AP59861 70 aa7.65□□□□□ -1.18
UPF3A-212ENST00000619079 XCL2Q9UBD3 114 aa7.65□□□□□ -1.18
UPF3A-212ENST00000619079 INSP01308 110 aa7.64□□□□□ -1.19
UPF3A-212ENST00000619079 HILS1P60008 231 aa7.64□□□□□ -1.19
UPF3A-212ENST00000619079 LINC00167Q96N53 147 aa7.64□□□□□ -1.19
UPF3A-212ENST00000619079 TMEM256-PLSCR3K7ERE1 68 aa7.64□□□□□ -1.19
UPF3A-212ENST00000619079 SS18Q15532 418 aa7.64□□□□□ -1.19
UPF3A-212ENST00000619079 TRAV7A0A075B6U4 112 aa7.63□□□□□ -1.19
UPF3A-212ENST00000619079 K7EQD1 137 aa7.63□□□□□ -1.19
UPF3A-212ENST00000619079 PAX4O43316 350 aa7.63□□□□□ -1.19
UPF3A-212ENST00000619079 ESM1Q9NQ30 184 aa7.63□□□□□ -1.19
UPF3A-212ENST00000619079 TRBV6-4A0A1B0GX49 114 aa7.63□□□□□ -1.19
UPF3A-212ENST00000619079 ENHOQ6UWT2 76 aa7.63□□□□□ -1.19
UPF3A-212ENST00000619079 NTM-AS1Q6ZSK4 140 aa7.63□□□□□ -1.19
UPF3A-212ENST00000619079 TOMM7Q9P0U1 55 aa7.63□□□□□ -1.19
UPF3A-212ENST00000619079 SLPIP03973 132 aa7.62□□□□□ -1.19
UPF3A-212ENST00000619079 PRM2P04554 102 aa7.62□□□□□ -1.19
UPF3A-212ENST00000619079 TMEM86BQ8N661 226 aa7.62□□□□□ -1.19
UPF3A-212ENST00000619079 NF1P21359 2839 aa7.62□□□□□ -1.19
UPF3A-212ENST00000619079 H7BZZ5 65 aa7.61□□□□□ -1.19
UPF3A-212ENST00000619079 FAM19A1Q7Z5A9 133 aa7.61□□□□□ -1.19
UPF3A-212ENST00000619079 KLKP1Q107X0 134 aa7.61□□□□□ -1.19
UPF3A-212ENST00000619079 SMIM26A0A096LP01 95 aa7.6□□□□□ -1.19
UPF3A-212ENST00000619079 RNASE1P07998 156 aaKnown RBP7.6□□□□□ -1.19
UPF3A-212ENST00000619079 WFDC9Q8NEX5 89 aa7.6□□□□□ -1.19
UPF3A-212ENST00000619079 Q8N814 137 aa7.59□□□□□ -1.19
UPF3A-212ENST00000619079 C2CD3Q4AC94 2353 aa7.59□□□□□ -1.19
UPF3A-212ENST00000619079 TRGV1A0A0A0MS02 117 aa7.59□□□□□ -1.19
UPF3A-212ENST00000619079 A0A1W2PRX2 142 aa7.59□□□□□ -1.19
UPF3A-212ENST00000619079 UBE2E2Q96LR5 201 aa7.59□□□□□ -1.19
UPF3A-212ENST00000619079 NDUFC1O43677 76 aa7.58□□□□□ -1.2
UPF3A-212ENST00000619079 IL17DQ8TAD2 202 aa7.58□□□□□ -1.2
UPF3A-212ENST00000619079 A0A087WZ39 114 aa7.58□□□□□ -1.2
UPF3A-212ENST00000619079 ATP5EP56381 51 aaPredicted RBP7.58□□□□□ -1.2
UPF3A-212ENST00000619079 LINC00336Q6ZUF6 198 aa7.58□□□□□ -1.2
UPF3A-212ENST00000619079 IGHV3OR16-9A0A0B4J2B5 98 aa7.57□□□□□ -1.2
UPF3A-212ENST00000619079 C10orf99Q6UWK7 81 aa7.57□□□□□ -1.2
UPF3A-212ENST00000619079 MAP6D1Q9H9H5 199 aa7.57□□□□□ -1.2
UPF3A-212ENST00000619079 SORL1Q92673 2214 aa7.57□□□□□ -1.2
UPF3A-212ENST00000619079 ATRQ13535 2644 aa7.56□□□□□ -1.2
UPF3A-212ENST00000619079 C11orf44Q8N8P7 122 aa7.56□□□□□ -1.2
UPF3A-212ENST00000619079 LINC00482Q8N8I6 264 aa7.56□□□□□ -1.2
UPF3A-212ENST00000619079 C1orf43Q9BWL3 253 aa7.56□□□□□ -1.2
UPF3A-212ENST00000619079 LOC110117498A0A087WWA1 95 aa7.54□□□□□ -1.2
UPF3A-212ENST00000619079 KRTAP24-1Q3LI83 254 aa7.54□□□□□ -1.2
UPF3A-212ENST00000619079 C6orf226Q5I0X4 101 aa7.54□□□□□ -1.2
UPF3A-212ENST00000619079 RBM3P98179 157 aaKnown RBP7.53□□□□□ -1.2
UPF3A-212ENST00000619079 PDE6GP18545 87 aa7.53□□□□□ -1.2
UPF3A-212ENST00000619079 CXCL6P80162 114 aa7.53□□□□□ -1.2
UPF3A-212ENST00000619079 Q6ZQT0 140 aa7.53□□□□□ -1.2
UPF3A-212ENST00000619079 ZNF702PQ9H963 129 aa7.53□□□□□ -1.2
UPF3A-212ENST00000619079 IGKV3OR2-268A0A0C4DH90 116 aa7.52□□□□□ -1.2
UPF3A-212ENST00000619079 F8WDY8 70 aa7.52□□□□□ -1.2
UPF3A-212ENST00000619079 ZNF561-AS1K7EIQ3 104 aa7.52□□□□□ -1.2
UPF3A-212ENST00000619079 LINC01547P58512 204 aaPredicted RBP7.52□□□□□ -1.2
UPF3A-212ENST00000619079 Q6ZTI0 123 aa7.52□□□□□ -1.2
UPF3A-212ENST00000619079 DYNLRB2Q8TF09 96 aa7.52□□□□□ -1.2
UPF3A-212ENST00000619079 C16orf95Q9H693 158 aa7.52□□□□□ -1.2
UPF3A-212ENST00000619079 FBN1P35555 2871 aaKnown RBP7.52□□□□□ -1.21
UPF3A-212ENST00000619079 H3BQ85 93 aa7.52□□□□□ -1.21
UPF3A-212ENST00000619079 LINC01006Q8NI28 216 aa7.52□□□□□ -1.21
UPF3A-212ENST00000619079 F8WEM9 126 aa7.51□□□□□ -1.21
UPF3A-212ENST00000619079 SLURP1P55000 103 aa7.51□□□□□ -1.21
UPF3A-212ENST00000619079 NANOS2P60321 138 aaKnown RBP7.51□□□□□ -1.21
UPF3A-212ENST00000619079 FP248Q71RG6 208 aaPredicted RBP7.51□□□□□ -1.21
UPF3A-212ENST00000619079 Q8IZM0 81 aa7.51□□□□□ -1.21
UPF3A-212ENST00000619079 C1orf158Q8N1D5 194 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 92.4 ms