RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 URB1-AS1Q96HZ7 61 aa12.24□□□□□ -0.45
UPF1-212ENST00000601689 C6orf48Q9UBA6 75 aa12.23□□□□□ -0.45
UPF1-212ENST00000601689 A0A096LNJ9 63 aa12.22□□□□□ -0.45
UPF1-212ENST00000601689 C10orf25Q5T742 122 aa12.22□□□□□ -0.45
UPF1-212ENST00000601689 IGLV5-45A0A087WSX0 123 aa12.21□□□□□ -0.45
UPF1-212ENST00000601689 C2orf82Q6UX34 121 aa12.21□□□□□ -0.45
UPF1-212ENST00000601689 F8VRH5 84 aa12.2□□□□□ -0.46
UPF1-212ENST00000601689 GAGE2EQ4V326 116 aa12.2□□□□□ -0.46
UPF1-212ENST00000601689 GAGE2DQ9UEU5 116 aa12.2□□□□□ -0.46
UPF1-212ENST00000601689 SRRM2Q9UQ35 2752 aaKnown RBP12.2□□□□□ -0.46
UPF1-212ENST00000601689 SMIM1B2RUZ4 78 aa12.19□□□□□ -0.46
UPF1-212ENST00000601689 NDUFC2-KCTD14E9PQ53 114 aa12.19□□□□□ -0.46
UPF1-212ENST00000601689 IGLC3P0DOY3 106 aa12.19□□□□□ -0.46
UPF1-212ENST00000601689 C9orf116Q5BN46 136 aaPredicted RBP12.19□□□□□ -0.46
UPF1-212ENST00000601689 COX7B2Q8TF08 81 aa12.19□□□□□ -0.46
UPF1-212ENST00000601689 Q6ZRP5 223 aa12.18□□□□□ -0.46
UPF1-212ENST00000601689 IFI27L1Q96BM0 104 aa12.18□□□□□ -0.46
UPF1-212ENST00000601689 SPINK8P0C7L1 97 aa12.17□□□□□ -0.46
UPF1-212ENST00000601689 COLCA2A8K830 154 aa12.16□□□□□ -0.46
UPF1-212ENST00000601689 CHTOPQ9Y3Y2 248 aaKnown RBP12.16□□□□□ -0.46
UPF1-212ENST00000601689 J3QL48 77 aa12.15□□□□□ -0.46
UPF1-212ENST00000601689 TMEM170BQ5T4T1 132 aa12.15□□□□□ -0.46
UPF1-212ENST00000601689 KRTAP10-4P60372 401 aaPredicted RBP12.14□□□□□ -0.47
UPF1-212ENST00000601689 FLG2Q5D862 2391 aaPredicted RBP12.13□□□□□ -0.47
UPF1-212ENST00000601689 TRAV12-1A0A0B4J245 112 aa12.13□□□□□ -0.47
UPF1-212ENST00000601689 A0A1W2PNN7 141 aa12.13□□□□□ -0.47
UPF1-212ENST00000601689 LEPROTL1O95214 131 aa12.13□□□□□ -0.47
UPF1-212ENST00000601689 ZNF22P17026 224 aaPredicted RBP12.12□□□□□ -0.47
UPF1-212ENST00000601689 SFTA2Q6UW10 78 aa12.12□□□□□ -0.47
UPF1-212ENST00000601689 FAM19A2Q8N3H0 131 aa12.12□□□□□ -0.47
UPF1-212ENST00000601689 HSPB8Q9UJY1 196 aa12.12□□□□□ -0.47
UPF1-212ENST00000601689 SERF1AO75920 110 aa12.11□□□□□ -0.47
UPF1-212ENST00000601689 PRR3P79522 188 aaKnown RBP12.1□□□□□ -0.47
UPF1-212ENST00000601689 FAM19A5Q7Z5A7 132 aaPredicted RBP12.1□□□□□ -0.47
UPF1-212ENST00000601689 C11orf86A6NJI1 115 aa12.09□□□□□ -0.47
UPF1-212ENST00000601689 OXTP01178 125 aa12.09□□□□□ -0.47
UPF1-212ENST00000601689 KRTAP29-1A8MX34 341 aaPredicted RBP12.08□□□□□ -0.48
UPF1-212ENST00000601689 IGLV5-39A0A0G2JS06 123 aa12.07□□□□□ -0.48
UPF1-212ENST00000601689 H0Y8G0 127 aa12.07□□□□□ -0.48
UPF1-212ENST00000601689 UBE2BP63146 152 aa12.07□□□□□ -0.48
UPF1-212ENST00000601689 PHF5AQ7RTV0 110 aaKnown RBP12.07□□□□□ -0.48
UPF1-212ENST00000601689 M0QXV9 152 aa12.06□□□□□ -0.48
UPF1-212ENST00000601689 SCO1O75880 301 aa12.06□□□□□ -0.48
UPF1-212ENST00000601689 FAM168BA1KXE4 195 aa12.05□□□□□ -0.48
UPF1-212ENST00000601689 FABP4P15090 132 aa12.04□□□□□ -0.48
UPF1-212ENST00000601689 LBHQ53QV2 105 aaPredicted RBP12.04□□□□□ -0.48
UPF1-212ENST00000601689 C9orf129Q5T035 196 aaKnown RBP12.04□□□□□ -0.48
UPF1-212ENST00000601689 XAGE1AQ9HD64 81 aa12.04□□□□□ -0.48
UPF1-212ENST00000601689 COX17Q14061 63 aa12.03□□□□□ -0.48
UPF1-212ENST00000601689 SPINK6Q6UWN8 80 aa12.03□□□□□ -0.48
UPF1-212ENST00000601689 MAP1LC3CQ9BXW4 147 aa12.03□□□□□ -0.48
UPF1-212ENST00000601689 HNRNPA3P51991 378 aaKnown RBP12.02□□□□□ -0.49
UPF1-212ENST00000601689 C1orf137Q5JT78 98 aa12.02□□□□□ -0.49
UPF1-212ENST00000601689 TMEM223A0PJW6 202 aa12.01□□□□□ -0.49
UPF1-212ENST00000601689 PLNP26678 52 aa12.01□□□□□ -0.49
UPF1-212ENST00000601689 PFN2P35080 140 aa12.01□□□□□ -0.49
UPF1-212ENST00000601689 PSORS1C2Q9UIG4 136 aa12.01□□□□□ -0.49
UPF1-212ENST00000601689 REG3GQ6UW15 175 aa12□□□□□ -0.49
UPF1-212ENST00000601689 ERG28Q9UKR5 140 aa12□□□□□ -0.49
UPF1-212ENST00000601689 MYCBP2O75592 4640 aa12□□□□□ -0.49
UPF1-212ENST00000601689 HIST1H2BKO60814 126 aa11.99□□□□□ -0.49
UPF1-212ENST00000601689 HIST1H2BJP06899 126 aa11.99□□□□□ -0.49
UPF1-212ENST00000601689 S100A1P23297 94 aa11.99□□□□□ -0.49
UPF1-212ENST00000601689 HIST1H2BOP23527 126 aa11.99□□□□□ -0.49
UPF1-212ENST00000601689 HIST1H2BBP33778 126 aa11.99□□□□□ -0.49
UPF1-212ENST00000601689 HIST1H2BDP58876 126 aa11.99□□□□□ -0.49
UPF1-212ENST00000601689 LINC00310P59036 64 aa11.99□□□□□ -0.49
UPF1-212ENST00000601689 HERVK_113P61574 105 aa11.99□□□□□ -0.49
UPF1-212ENST00000601689 HIST1H2BCP62807 126 aa11.99□□□□□ -0.49
UPF1-212ENST00000601689 ODF1Q14990 250 aa11.99□□□□□ -0.49
UPF1-212ENST00000601689 HIST2H2BEQ16778 126 aa11.99□□□□□ -0.49
UPF1-212ENST00000601689 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.99□□□□□ -0.49
UPF1-212ENST00000601689 HIST1H2BHQ93079 126 aa11.99□□□□□ -0.49
UPF1-212ENST00000601689 HIST1H2BNQ99877 126 aa11.99□□□□□ -0.49
UPF1-212ENST00000601689 HIST1H2BMQ99879 126 aa11.99□□□□□ -0.49
UPF1-212ENST00000601689 DMBT1Q9UGM3 2413 aaPredicted RBP11.98□□□□□ -0.49
UPF1-212ENST00000601689 LINC00587B1AMM8 73 aa11.98□□□□□ -0.49
UPF1-212ENST00000601689 NUPR1O60356 82 aa11.98□□□□□ -0.49
UPF1-212ENST00000601689 ATP6V1G1O75348 118 aa11.98□□□□□ -0.49
UPF1-212ENST00000601689 TP73-AS1Q9UF72 201 aa11.98□□□□□ -0.49
UPF1-212ENST00000601689 C22orf24Q9Y442 160 aa11.98□□□□□ -0.49
UPF1-212ENST00000601689 DPM2O94777 84 aa11.97□□□□□ -0.49
UPF1-212ENST00000601689 NKAPP1Q8N9T2 125 aa11.97□□□□□ -0.49
UPF1-212ENST00000601689 ZNF625Q96I27 306 aaPredicted RBP11.97□□□□□ -0.49
UPF1-212ENST00000601689 PLA2G2DQ9UNK4 145 aa11.96□□□□□ -0.49
UPF1-212ENST00000601689 IGKCP01834 107 aa11.95□□□□□ -0.5
UPF1-212ENST00000601689 LINC00158P58513 81 aa11.95□□□□□ -0.5
UPF1-212ENST00000601689 HERV-K104P63124 156 aa11.95□□□□□ -0.5
UPF1-212ENST00000601689 RPL24P83731 157 aaKnown RBP11.95□□□□□ -0.5
UPF1-212ENST00000601689 SERTAD4-AS1Q5TG53 156 aa11.95□□□□□ -0.5
UPF1-212ENST00000601689 MRPL55Q7Z7F7 128 aaKnown RBP11.95□□□□□ -0.5
UPF1-212ENST00000601689 PKHD1L1Q86WI1 4243 aa11.95□□□□□ -0.5
UPF1-212ENST00000601689 MEIG1Q5JSS6 88 aa11.94□□□□□ -0.5
UPF1-212ENST00000601689 MYMXA0A1B0GTQ4 84 aa11.93□□□□□ -0.5
UPF1-212ENST00000601689 IGLV7-43P04211 117 aa11.93□□□□□ -0.5
UPF1-212ENST00000601689 PLEKHB2Q96CS7 222 aa11.93□□□□□ -0.5
UPF1-212ENST00000601689 SRSF9Q13242 221 aaKnown RBP eCLIP11.92□□□□□ -0.5
UPF1-212ENST00000601689 KRTAP7-1Q8IUC3 87 aa11.92□□□□□ -0.5
UPF1-212ENST00000601689 DIRC1Q969H9 104 aa11.92□□□□□ -0.5
UPF1-212ENST00000601689 LEPROTO15243 131 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 851.5 ms