RNA–Protein interactions for RNA: ENST00000601444.2

SSBP4-210, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 427 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-210ENST00000601444 SPINK8P0C7L1 97 aa12.67□□□□□ -0.38
SSBP4-210ENST00000601444 RPL18AQ02543 176 aaKnown RBP12.67□□□□□ -0.38
SSBP4-210ENST00000601444 C6orf226Q5I0X4 101 aa12.67□□□□□ -0.38
SSBP4-210ENST00000601444 Q8IZM0 81 aa12.67□□□□□ -0.38
SSBP4-210ENST00000601444 SRRM2Q9UQ35 2752 aaKnown RBP12.67□□□□□ -0.38
SSBP4-210ENST00000601444 IFI27L1Q96BM0 104 aa12.66□□□□□ -0.38
SSBP4-210ENST00000601444 PKIGQ9Y2B9 76 aa12.66□□□□□ -0.38
SSBP4-210ENST00000601444 KRTAP10-4P60372 401 aaPredicted RBP12.65□□□□□ -0.38
SSBP4-210ENST00000601444 C9orf116Q5BN46 136 aaPredicted RBP12.65□□□□□ -0.38
SSBP4-210ENST00000601444 LINC00474Q9P2X8 69 aa12.65□□□□□ -0.38
SSBP4-210ENST00000601444 PLA2G1BP04054 148 aaKnown RBP12.64□□□□□ -0.39
SSBP4-210ENST00000601444 INAFM2P0DMQ5 153 aa12.64□□□□□ -0.39
SSBP4-210ENST00000601444 CKS1BP61024 79 aa12.64□□□□□ -0.39
SSBP4-210ENST00000601444 Q6ZRP5 223 aa12.64□□□□□ -0.39
SSBP4-210ENST00000601444 C11orf86A6NJI1 115 aa12.63□□□□□ -0.39
SSBP4-210ENST00000601444 ZNF22P17026 224 aaPredicted RBP12.63□□□□□ -0.39
SSBP4-210ENST00000601444 CHTOPQ9Y3Y2 248 aaKnown RBP12.63□□□□□ -0.39
SSBP4-210ENST00000601444 TRBV30A0A0K0K1B3 111 aa12.62□□□□□ -0.39
SSBP4-210ENST00000601444 A0A1W2PNN7 141 aa12.62□□□□□ -0.39
SSBP4-210ENST00000601444 HIST1H2BKO60814 126 aa12.62□□□□□ -0.39
SSBP4-210ENST00000601444 HIST1H2BJP06899 126 aa12.62□□□□□ -0.39
SSBP4-210ENST00000601444 HIST1H2BOP23527 126 aa12.62□□□□□ -0.39
SSBP4-210ENST00000601444 HIST1H2BBP33778 126 aa12.62□□□□□ -0.39
SSBP4-210ENST00000601444 HIST1H2BDP58876 126 aa12.62□□□□□ -0.39
SSBP4-210ENST00000601444 HIST1H2BCP62807 126 aa12.62□□□□□ -0.39
SSBP4-210ENST00000601444 HIST2H2BEQ16778 126 aa12.62□□□□□ -0.39
SSBP4-210ENST00000601444 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.62□□□□□ -0.39
SSBP4-210ENST00000601444 COX7B2Q8TF08 81 aa12.62□□□□□ -0.39
SSBP4-210ENST00000601444 HIST1H2BHQ93079 126 aa12.62□□□□□ -0.39
SSBP4-210ENST00000601444 HIST1H2BNQ99877 126 aa12.62□□□□□ -0.39
SSBP4-210ENST00000601444 HIST1H2BMQ99879 126 aa12.62□□□□□ -0.39
SSBP4-210ENST00000601444 TLX1NBP0CAT3 122 aa12.61□□□□□ -0.39
SSBP4-210ENST00000601444 H3BRM9 83 aa12.6□□□□□ -0.39
SSBP4-210ENST00000601444 S100A1P23297 94 aa12.6□□□□□ -0.39
SSBP4-210ENST00000601444 RPL37AP61513 92 aaKnown RBP12.6□□□□□ -0.39
SSBP4-210ENST00000601444 GAGE2EQ4V326 116 aa12.6□□□□□ -0.39
SSBP4-210ENST00000601444 GAGE2DQ9UEU5 116 aa12.6□□□□□ -0.39
SSBP4-210ENST00000601444 TRAV12-1A0A0B4J245 112 aa12.59□□□□□ -0.39
SSBP4-210ENST00000601444 ATP6V1G1O75348 118 aa12.59□□□□□ -0.39
SSBP4-210ENST00000601444 LEPROTL1O95214 131 aa12.59□□□□□ -0.39
SSBP4-210ENST00000601444 F8VRH5 84 aa12.58□□□□□ -0.4
SSBP4-210ENST00000601444 H0Y8G0 127 aa12.58□□□□□ -0.4
SSBP4-210ENST00000601444 FABP4P15090 132 aa12.58□□□□□ -0.4
SSBP4-210ENST00000601444 TMEM170BQ5T4T1 132 aa12.58□□□□□ -0.4
SSBP4-210ENST00000601444 IGLV5-39A0A0G2JS06 123 aa12.57□□□□□ -0.4
SSBP4-210ENST00000601444 NDUFC2-KCTD14E9PQ53 114 aa12.57□□□□□ -0.4
SSBP4-210ENST00000601444 FAM168BA1KXE4 195 aa12.56□□□□□ -0.4
SSBP4-210ENST00000601444 CXCL5P42830 114 aa12.55□□□□□ -0.4
SSBP4-210ENST00000601444 HNRNPA3P51991 378 aaKnown RBP12.54□□□□□ -0.4
SSBP4-210ENST00000601444 ODF1Q14990 250 aa12.54□□□□□ -0.4
SSBP4-210ENST00000601444 C9orf129Q5T035 196 aaKnown RBP12.54□□□□□ -0.4
SSBP4-210ENST00000601444 C7orf33Q8WU49 177 aa12.54□□□□□ -0.4
SSBP4-210ENST00000601444 HSPB8Q9UJY1 196 aa12.53□□□□□ -0.4
SSBP4-210ENST00000601444 KRTAP7-1Q8IUC3 87 aa12.52□□□□□ -0.41
SSBP4-210ENST00000601444 TMEM223A0PJW6 202 aa12.51□□□□□ -0.41
SSBP4-210ENST00000601444 PHF5AQ7RTV0 110 aaKnown RBP12.51□□□□□ -0.41
SSBP4-210ENST00000601444 FAM19A5Q7Z5A7 132 aaPredicted RBP12.5□□□□□ -0.41
SSBP4-210ENST00000601444 XAGE1AQ9HD64 81 aa12.5□□□□□ -0.41
SSBP4-210ENST00000601444 MYCBP2O75592 4640 aa12.49□□□□□ -0.41
SSBP4-210ENST00000601444 PMCHL2Q9BQD1 86 aa12.49□□□□□ -0.41
SSBP4-210ENST00000601444 PKHD1L1Q86WI1 4243 aa12.48□□□□□ -0.41
SSBP4-210ENST00000601444 PRR3P79522 188 aaKnown RBP12.46□□□□□ -0.41
SSBP4-210ENST00000601444 ZNF625Q96I27 306 aaPredicted RBP12.46□□□□□ -0.41
SSBP4-210ENST00000601444 MAP1LC3CQ9BXW4 147 aa12.46□□□□□ -0.41
SSBP4-210ENST00000601444 COA6Q5JTJ3 125 aaKnown RBP12.45□□□□□ -0.42
SSBP4-210ENST00000601444 SERTAD4-AS1Q5TG53 156 aa12.45□□□□□ -0.42
SSBP4-210ENST00000601444 PFN2P35080 140 aa12.44□□□□□ -0.42
SSBP4-210ENST00000601444 KRTAP11-1Q8IUC1 163 aa12.44□□□□□ -0.42
SSBP4-210ENST00000601444 FLG2Q5D862 2391 aaPredicted RBP12.43□□□□□ -0.42
SSBP4-210ENST00000601444 M0QXV9 152 aa12.42□□□□□ -0.42
SSBP4-210ENST00000601444 DPM2O94777 84 aa12.42□□□□□ -0.42
SSBP4-210ENST00000601444 PLNP26678 52 aa12.42□□□□□ -0.42
SSBP4-210ENST00000601444 SYS1-DBNDD2H3BUS1 97 aa12.41□□□□□ -0.42
SSBP4-210ENST00000601444 IGKCP01834 107 aa12.41□□□□□ -0.42
SSBP4-210ENST00000601444 PSORS1C2Q9UIG4 136 aa12.41□□□□□ -0.42
SSBP4-210ENST00000601444 ERG28Q9UKR5 140 aa12.41□□□□□ -0.42
SSBP4-210ENST00000601444 LRP1Q07954 4544 aaKnown RBP12.4□□□□□ -0.42
SSBP4-210ENST00000601444 C22orf24Q9Y442 160 aa12.39□□□□□ -0.43
SSBP4-210ENST00000601444 TSPEAR-AS2P59090 65 aa12.38□□□□□ -0.43
SSBP4-210ENST00000601444 FAT3Q8TDW7 4589 aa12.37□□□□□ -0.43
SSBP4-210ENST00000601444 A0A0U1RRA0 63 aa12.36□□□□□ -0.43
SSBP4-210ENST00000601444 LEPROTO15243 131 aa12.36□□□□□ -0.43
SSBP4-210ENST00000601444 C3orf79P0CE67 100 aa12.36□□□□□ -0.43
SSBP4-210ENST00000601444 COX17Q14061 63 aa12.36□□□□□ -0.43
SSBP4-210ENST00000601444 SFTA2Q6UW10 78 aa12.36□□□□□ -0.43
SSBP4-210ENST00000601444 C1orf137Q5JT78 98 aa12.35□□□□□ -0.43
SSBP4-210ENST00000601444 SND1-IT1Q9HBX3 110 aa12.35□□□□□ -0.43
SSBP4-210ENST00000601444 LINC00158P58513 81 aa12.34□□□□□ -0.43
SSBP4-210ENST00000601444 UBE2BP63146 152 aa12.34□□□□□ -0.43
SSBP4-210ENST00000601444 LINC01545Q5VT33 79 aa12.34□□□□□ -0.43
SSBP4-210ENST00000601444 NDUFA12Q9UI09 145 aa12.34□□□□□ -0.43
SSBP4-210ENST00000601444 KRTAP29-1A8MX34 341 aaPredicted RBP12.33□□□□□ -0.44
SSBP4-210ENST00000601444 KRTDAPP60985 99 aa12.33□□□□□ -0.44
SSBP4-210ENST00000601444 SRSF9Q13242 221 aaKnown RBP eCLIP12.33□□□□□ -0.44
SSBP4-210ENST00000601444 PET117Q6UWS5 81 aa12.33□□□□□ -0.44
SSBP4-210ENST00000601444 PLA2G2DQ9UNK4 145 aa12.33□□□□□ -0.44
SSBP4-210ENST00000601444 J3QQQ9 107 aa12.32□□□□□ -0.44
SSBP4-210ENST00000601444 SMIM13P0DJ93 91 aa12.32□□□□□ -0.44
SSBP4-210ENST00000601444 HERVK_113P61574 105 aa12.32□□□□□ -0.44
SSBP4-210ENST00000601444 PLEKHB2Q96CS7 222 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms