RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 FLG2Q5D862 2391 aaPredicted RBP11.65□□□□□ -0.54
LIG1-216ENST00000598938 H0Y8G0 127 aa11.65□□□□□ -0.54
LIG1-216ENST00000598938 NDUFA1O15239 70 aa11.65□□□□□ -0.54
LIG1-216ENST00000598938 SPINK8P0C7L1 97 aa11.65□□□□□ -0.54
LIG1-216ENST00000598938 FAT1Q14517 4588 aa11.64□□□□□ -0.55
LIG1-216ENST00000598938 PRSS2P07478 247 aa11.64□□□□□ -0.55
LIG1-216ENST00000598938 RNF151Q2KHN1 245 aa11.64□□□□□ -0.55
LIG1-216ENST00000598938 C10orf25Q5T742 122 aa11.64□□□□□ -0.55
LIG1-216ENST00000598938 UNQ6190/PRO20217Q6UXQ8 127 aa11.64□□□□□ -0.55
LIG1-216ENST00000598938 MAP1LC3CQ9BXW4 147 aa11.64□□□□□ -0.55
LIG1-216ENST00000598938 TOMM7Q9P0U1 55 aa11.64□□□□□ -0.55
LIG1-216ENST00000598938 IGLV5-39A0A0G2JS06 123 aa11.63□□□□□ -0.55
LIG1-216ENST00000598938 C6orf226Q5I0X4 101 aa11.63□□□□□ -0.55
LIG1-216ENST00000598938 TMEM170BQ5T4T1 132 aa11.63□□□□□ -0.55
LIG1-216ENST00000598938 C2orf82Q6UX34 121 aa11.62□□□□□ -0.55
LIG1-216ENST00000598938 COX7B2Q8TF08 81 aa11.62□□□□□ -0.55
LIG1-216ENST00000598938 PKIGQ9Y2B9 76 aa11.62□□□□□ -0.55
LIG1-216ENST00000598938 PANO1I0J062 215 aa11.61□□□□□ -0.55
LIG1-216ENST00000598938 CIRBPQ14011 172 aaKnown RBP11.61□□□□□ -0.55
LIG1-216ENST00000598938 C6orf48Q9UBA6 75 aa11.61□□□□□ -0.55
LIG1-216ENST00000598938 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.61□□□□□ -0.55
LIG1-216ENST00000598938 VPS13BQ7Z7G8 4022 aa11.6□□□□□ -0.55
LIG1-216ENST00000598938 LOC107984640A0A0U1RRK4 108 aa11.6□□□□□ -0.55
LIG1-216ENST00000598938 FAM229AH3BQW9 127 aa11.6□□□□□ -0.55
LIG1-216ENST00000598938 CKS1BP61024 79 aa11.6□□□□□ -0.55
LIG1-216ENST00000598938 HAMPP81172 84 aa11.6□□□□□ -0.55
LIG1-216ENST00000598938 TRBV30A0A0K0K1B3 111 aa11.59□□□□□ -0.55
LIG1-216ENST00000598938 TMEM223A0PJW6 202 aa11.59□□□□□ -0.55
LIG1-216ENST00000598938 SYS1-DBNDD2H3BUS1 97 aa11.59□□□□□ -0.55
LIG1-216ENST00000598938 PLNP26678 52 aa11.59□□□□□ -0.55
LIG1-216ENST00000598938 CXCL5P42830 114 aa11.59□□□□□ -0.55
LIG1-216ENST00000598938 A0A096LNI7 61 aa11.58□□□□□ -0.56
LIG1-216ENST00000598938 CHTF8P0CG12 524 aa11.58□□□□□ -0.56
LIG1-216ENST00000598938 SCXQ7RTU7 201 aa11.58□□□□□ -0.56
LIG1-216ENST00000598938 SPACA4Q8TDM5 124 aa11.58□□□□□ -0.56
LIG1-216ENST00000598938 DPM2O94777 84 aa11.57□□□□□ -0.56
LIG1-216ENST00000598938 TLX1NBP0CAT3 122 aa11.57□□□□□ -0.56
LIG1-216ENST00000598938 HIST3H2BBQ8N257 126 aa11.57□□□□□ -0.56
LIG1-216ENST00000598938 PMCHL2Q9BQD1 86 aa11.57□□□□□ -0.56
LIG1-216ENST00000598938 S100A6P06703 90 aa11.56□□□□□ -0.56
LIG1-216ENST00000598938 C3orf79P0CE67 100 aa11.56□□□□□ -0.56
LIG1-216ENST00000598938 PET117Q6UWS5 81 aa11.56□□□□□ -0.56
LIG1-216ENST00000598938 CIRBP-AS1Q8TBR5 109 aa11.56□□□□□ -0.56
LIG1-216ENST00000598938 IGKV2-24A0A0C4DH68 120 aa11.55□□□□□ -0.56
LIG1-216ENST00000598938 IGKCP01834 107 aa11.55□□□□□ -0.56
LIG1-216ENST00000598938 PTTG1IPP53801 180 aa11.55□□□□□ -0.56
LIG1-216ENST00000598938 LINC01545Q5VT33 79 aa11.55□□□□□ -0.56
LIG1-216ENST00000598938 LINC00474Q9P2X8 69 aa11.55□□□□□ -0.56
LIG1-216ENST00000598938 J3QL48 77 aa11.54□□□□□ -0.56
LIG1-216ENST00000598938 C9orf116Q5BN46 136 aaPredicted RBP11.54□□□□□ -0.56
LIG1-216ENST00000598938 SMR3BP02814 79 aaPredicted RBP11.53□□□□□ -0.56
LIG1-216ENST00000598938 RPL18AQ02543 176 aaKnown RBP11.53□□□□□ -0.56
LIG1-216ENST00000598938 GAGE2BQ13066 116 aa11.53□□□□□ -0.56
LIG1-216ENST00000598938 MAJINQ3KP22 176 aa11.53□□□□□ -0.56
LIG1-216ENST00000598938 Q6ZRP5 223 aa11.53□□□□□ -0.56
LIG1-216ENST00000598938 A0A087WYN8 130 aa11.52□□□□□ -0.57
LIG1-216ENST00000598938 KRTDAPP60985 99 aa11.52□□□□□ -0.57
LIG1-216ENST00000598938 HIST1H2BLQ99880 126 aa11.52□□□□□ -0.57
LIG1-216ENST00000598938 NDUFC2-KCTD14E9PQ53 114 aa11.51□□□□□ -0.57
LIG1-216ENST00000598938 S100A2P29034 98 aa11.51□□□□□ -0.57
LIG1-216ENST00000598938 SNRPEP62304 92 aaKnown RBP11.51□□□□□ -0.57
LIG1-216ENST00000598938 PLAC8Q9NZF1 115 aa11.51□□□□□ -0.57
LIG1-216ENST00000598938 DPH3Q96FX2 82 aa11.5□□□□□ -0.57
LIG1-216ENST00000598938 ZNF625Q96I27 306 aaPredicted RBP11.5□□□□□ -0.57
LIG1-216ENST00000598938 C5orf52A6NGY3 159 aa11.49□□□□□ -0.57
LIG1-216ENST00000598938 SFTA2Q6UW10 78 aa11.49□□□□□ -0.57
LIG1-216ENST00000598938 STPG4Q8N801 248 aa11.49□□□□□ -0.57
LIG1-216ENST00000598938 HERVK_113P61574 105 aa11.48□□□□□ -0.57
LIG1-216ENST00000598938 LEPROTO15243 131 aa11.47□□□□□ -0.57
LIG1-216ENST00000598938 C20orf202A1L168 122 aa11.46□□□□□ -0.57
LIG1-216ENST00000598938 KRTAP29-1A8MX34 341 aaPredicted RBP11.46□□□□□ -0.57
LIG1-216ENST00000598938 TSPEAR-AS2P59090 65 aa11.46□□□□□ -0.57
LIG1-216ENST00000598938 GAGE2EQ4V326 116 aa11.46□□□□□ -0.57
LIG1-216ENST00000598938 PLEKHB2Q96CS7 222 aa11.46□□□□□ -0.57
LIG1-216ENST00000598938 GAGE2DQ9UEU5 116 aa11.46□□□□□ -0.57
LIG1-216ENST00000598938 A0A1W2PNN7 141 aa11.44□□□□□ -0.58
LIG1-216ENST00000598938 E9PLD3 99 aa11.44□□□□□ -0.58
LIG1-216ENST00000598938 LINC00528Q8N1L1 170 aa11.44□□□□□ -0.58
LIG1-216ENST00000598938 ERG28Q9UKR5 140 aa11.44□□□□□ -0.58
LIG1-216ENST00000598938 J3QQQ9 107 aa11.43□□□□□ -0.58
LIG1-216ENST00000598938 PLA2G1BP04054 148 aaKnown RBP11.43□□□□□ -0.58
LIG1-216ENST00000598938 C9orf129Q5T035 196 aaKnown RBP11.43□□□□□ -0.58
LIG1-216ENST00000598938 SERTAD4-AS1Q5TG53 156 aa11.43□□□□□ -0.58
LIG1-216ENST00000598938 NDUFA12Q9UI09 145 aa11.43□□□□□ -0.58
LIG1-216ENST00000598938 COX17Q14061 63 aa11.42□□□□□ -0.58
LIG1-216ENST00000598938 AKR1D1P51857 326 aa11.41□□□□□ -0.58
LIG1-216ENST00000598938 HERV-K104P63124 156 aa11.41□□□□□ -0.58
LIG1-216ENST00000598938 MYMXA0A1B0GTQ4 84 aa11.4□□□□□ -0.58
LIG1-216ENST00000598938 FAM168BA1KXE4 195 aa11.4□□□□□ -0.58
LIG1-216ENST00000598938 PFN2P35080 140 aa11.4□□□□□ -0.58
LIG1-216ENST00000598938 NMUP48645 174 aa11.4□□□□□ -0.58
LIG1-216ENST00000598938 XAGE1AQ9HD64 81 aa11.4□□□□□ -0.58
LIG1-216ENST00000598938 LGALS3P17931 250 aaKnown RBP11.39□□□□□ -0.59
LIG1-216ENST00000598938 KRTAP7-1Q8IUC3 87 aa11.38□□□□□ -0.59
LIG1-216ENST00000598938 FAM19A5Q7Z5A7 132 aaPredicted RBP11.37□□□□□ -0.59
LIG1-216ENST00000598938 ATOH7Q8N100 152 aa11.37□□□□□ -0.59
LIG1-216ENST00000598938 C7orf33Q8WU49 177 aa11.36□□□□□ -0.59
LIG1-216ENST00000598938 HMCN2Q8NDA2 5059 aa11.36□□□□□ -0.59
LIG1-216ENST00000598938 IGKV2D-26A0A0A0MRZ7 120 aa11.35□□□□□ -0.59
LIG1-216ENST00000598938 SMIM13P0DJ93 91 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms