RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 UNQ6190/PRO20217Q6UXQ8 127 aa12.55□□□□□ -0.4
SHKBP1-214ENST00000597396 Q8IZM0 81 aa12.55□□□□□ -0.4
SHKBP1-214ENST00000597396 CHTOPQ9Y3Y2 248 aaKnown RBP12.55□□□□□ -0.4
SHKBP1-214ENST00000597396 A0A096LNI7 61 aa12.54□□□□□ -0.4
SHKBP1-214ENST00000597396 SPINK8P0C7L1 97 aa12.54□□□□□ -0.4
SHKBP1-214ENST00000597396 CKS1BP61024 79 aa12.54□□□□□ -0.4
SHKBP1-214ENST00000597396 MAJINQ3KP22 176 aa12.54□□□□□ -0.4
SHKBP1-214ENST00000597396 C10orf25Q5T742 122 aa12.54□□□□□ -0.4
SHKBP1-214ENST00000597396 C2orf82Q6UX34 121 aa12.54□□□□□ -0.4
SHKBP1-214ENST00000597396 SPACA4Q8TDM5 124 aa12.54□□□□□ -0.4
SHKBP1-214ENST00000597396 TRAV12-1A0A0B4J245 112 aa12.53□□□□□ -0.4
SHKBP1-214ENST00000597396 EPM2AB3EWF7 344 aa12.53□□□□□ -0.4
SHKBP1-214ENST00000597396 FAM229AH3BQW9 127 aa12.52□□□□□ -0.41
SHKBP1-214ENST00000597396 FABP4P15090 132 aa12.52□□□□□ -0.41
SHKBP1-214ENST00000597396 ZNF22P17026 224 aaPredicted RBP12.52□□□□□ -0.41
SHKBP1-214ENST00000597396 RPL18AQ02543 176 aaKnown RBP12.52□□□□□ -0.41
SHKBP1-214ENST00000597396 GAGE2BQ13066 116 aa12.52□□□□□ -0.41
SHKBP1-214ENST00000597396 LINC00474Q9P2X8 69 aa12.52□□□□□ -0.41
SHKBP1-214ENST00000597396 C6orf48Q9UBA6 75 aa12.52□□□□□ -0.41
SHKBP1-214ENST00000597396 HSPB8Q9UJY1 196 aa12.52□□□□□ -0.41
SHKBP1-214ENST00000597396 A0A087WYN8 130 aa12.51□□□□□ -0.41
SHKBP1-214ENST00000597396 TRBV30A0A0K0K1B3 111 aa12.51□□□□□ -0.41
SHKBP1-214ENST00000597396 C11orf86A6NJI1 115 aa12.51□□□□□ -0.41
SHKBP1-214ENST00000597396 H0Y8G0 127 aa12.51□□□□□ -0.41
SHKBP1-214ENST00000597396 Q5VSD8 79 aa12.51□□□□□ -0.41
SHKBP1-214ENST00000597396 COX7B2Q8TF08 81 aa12.51□□□□□ -0.41
SHKBP1-214ENST00000597396 PTTG1IPP53801 180 aa12.5□□□□□ -0.41
SHKBP1-214ENST00000597396 TMEM170BQ5T4T1 132 aa12.5□□□□□ -0.41
SHKBP1-214ENST00000597396 LINC00528Q8N1L1 170 aa12.5□□□□□ -0.41
SHKBP1-214ENST00000597396 F8VRH5 84 aa12.49□□□□□ -0.41
SHKBP1-214ENST00000597396 CXCL5P42830 114 aa12.49□□□□□ -0.41
SHKBP1-214ENST00000597396 STPG4Q8N801 248 aa12.48□□□□□ -0.41
SHKBP1-214ENST00000597396 PLAC8Q9NZF1 115 aa12.47□□□□□ -0.41
SHKBP1-214ENST00000597396 TLX1NBP0CAT3 122 aa12.46□□□□□ -0.41
SHKBP1-214ENST00000597396 ODF1Q14990 250 aa12.45□□□□□ -0.42
SHKBP1-214ENST00000597396 C9orf116Q5BN46 136 aaPredicted RBP12.45□□□□□ -0.42
SHKBP1-214ENST00000597396 IGLV5-39A0A0G2JS06 123 aa12.44□□□□□ -0.42
SHKBP1-214ENST00000597396 MAP1LC3CQ9BXW4 147 aa12.44□□□□□ -0.42
SHKBP1-214ENST00000597396 PLA2G1BP04054 148 aaKnown RBP12.43□□□□□ -0.42
SHKBP1-214ENST00000597396 INAFM2P0DMQ5 153 aa12.43□□□□□ -0.42
SHKBP1-214ENST00000597396 GAGE2EQ4V326 116 aa12.43□□□□□ -0.42
SHKBP1-214ENST00000597396 Q6ZRP5 223 aa12.43□□□□□ -0.42
SHKBP1-214ENST00000597396 GAGE2DQ9UEU5 116 aa12.43□□□□□ -0.42
SHKBP1-214ENST00000597396 NDUFC2-KCTD14E9PQ53 114 aa12.42□□□□□ -0.42
SHKBP1-214ENST00000597396 COA6Q5JTJ3 125 aaKnown RBP12.42□□□□□ -0.42
SHKBP1-214ENST00000597396 TMEM223A0PJW6 202 aa12.4□□□□□ -0.42
SHKBP1-214ENST00000597396 FAT1Q14517 4588 aa12.39□□□□□ -0.43
SHKBP1-214ENST00000597396 PLNP26678 52 aa12.39□□□□□ -0.43
SHKBP1-214ENST00000597396 C7orf33Q8WU49 177 aa12.39□□□□□ -0.43
SHKBP1-214ENST00000597396 DPM2O94777 84 aa12.38□□□□□ -0.43
SHKBP1-214ENST00000597396 RPL37AP61513 92 aaKnown RBP12.38□□□□□ -0.43
SHKBP1-214ENST00000597396 PMCHL2Q9BQD1 86 aa12.38□□□□□ -0.43
SHKBP1-214ENST00000597396 A0A1W2PNN7 141 aa12.37□□□□□ -0.43
SHKBP1-214ENST00000597396 SYS1-DBNDD2H3BUS1 97 aa12.36□□□□□ -0.43
SHKBP1-214ENST00000597396 IGKCP01834 107 aa12.36□□□□□ -0.43
SHKBP1-214ENST00000597396 DMBT1Q9UGM3 2413 aaPredicted RBP12.35□□□□□ -0.43
SHKBP1-214ENST00000597396 SFTA2Q6UW10 78 aa12.35□□□□□ -0.43
SHKBP1-214ENST00000597396 VPS13BQ7Z7G8 4022 aa12.34□□□□□ -0.43
SHKBP1-214ENST00000597396 HERVK_113P61574 105 aa12.33□□□□□ -0.44
SHKBP1-214ENST00000597396 C9orf129Q5T035 196 aaKnown RBP12.33□□□□□ -0.44
SHKBP1-214ENST00000597396 FAM19A5Q7Z5A7 132 aaPredicted RBP12.33□□□□□ -0.44
SHKBP1-214ENST00000597396 FAM168BA1KXE4 195 aa12.32□□□□□ -0.44
SHKBP1-214ENST00000597396 PET117Q6UWS5 81 aa12.32□□□□□ -0.44
SHKBP1-214ENST00000597396 ZNF625Q96I27 306 aaPredicted RBP12.32□□□□□ -0.44
SHKBP1-214ENST00000597396 XAGE1AQ9HD64 81 aa12.32□□□□□ -0.44
SHKBP1-214ENST00000597396 PFN2P35080 140 aa12.31□□□□□ -0.44
SHKBP1-214ENST00000597396 ERG28Q9UKR5 140 aa12.31□□□□□ -0.44
SHKBP1-214ENST00000597396 HERC1Q15751 4861 aa12.31□□□□□ -0.44
SHKBP1-214ENST00000597396 C3orf79P0CE67 100 aa12.3□□□□□ -0.44
SHKBP1-214ENST00000597396 KRTDAPP60985 99 aa12.3□□□□□ -0.44
SHKBP1-214ENST00000597396 LEPROTO15243 131 aa12.29□□□□□ -0.44
SHKBP1-214ENST00000597396 S100A6P06703 90 aa12.29□□□□□ -0.44
SHKBP1-214ENST00000597396 KRTAP10-4P60372 401 aaPredicted RBP12.29□□□□□ -0.44
SHKBP1-214ENST00000597396 LINC01545Q5VT33 79 aa12.29□□□□□ -0.44
SHKBP1-214ENST00000597396 PHF5AQ7RTV0 110 aaKnown RBP12.29□□□□□ -0.44
SHKBP1-214ENST00000597396 PLEKHB2Q96CS7 222 aa12.29□□□□□ -0.44
SHKBP1-214ENST00000597396 SRRM2Q9UQ35 2752 aaKnown RBP12.28□□□□□ -0.44
SHKBP1-214ENST00000597396 M0QXV9 152 aa12.27□□□□□ -0.45
SHKBP1-214ENST00000597396 S100A2P29034 98 aa12.27□□□□□ -0.45
SHKBP1-214ENST00000597396 COX17Q14061 63 aa12.27□□□□□ -0.45
SHKBP1-214ENST00000597396 NDUFA12Q9UI09 145 aa12.27□□□□□ -0.45
SHKBP1-214ENST00000597396 FLG2Q5D862 2391 aaPredicted RBP12.27□□□□□ -0.45
SHKBP1-214ENST00000597396 MYMXA0A1B0GTQ4 84 aa12.25□□□□□ -0.45
SHKBP1-214ENST00000597396 C20orf202A1L168 122 aa12.25□□□□□ -0.45
SHKBP1-214ENST00000597396 HERV-K104P63124 156 aa12.25□□□□□ -0.45
SHKBP1-214ENST00000597396 KRTAP7-1Q8IUC3 87 aa12.25□□□□□ -0.45
SHKBP1-214ENST00000597396 HIST3H2BBQ8N257 126 aa12.25□□□□□ -0.45
SHKBP1-214ENST00000597396 J3QQQ9 107 aa12.24□□□□□ -0.45
SHKBP1-214ENST00000597396 LGALS3P17931 250 aaKnown RBP12.24□□□□□ -0.45
SHKBP1-214ENST00000597396 LINC00158P58513 81 aa12.24□□□□□ -0.45
SHKBP1-214ENST00000597396 TSPEAR-AS2P59090 65 aa12.24□□□□□ -0.45
SHKBP1-214ENST00000597396 PRR3P79522 188 aaKnown RBP12.24□□□□□ -0.45
SHKBP1-214ENST00000597396 MEIG1Q5JSS6 88 aa12.24□□□□□ -0.45
SHKBP1-214ENST00000597396 SERTAD4-AS1Q5TG53 156 aa12.24□□□□□ -0.45
SHKBP1-214ENST00000597396 A0A0U1RRA0 63 aa12.22□□□□□ -0.45
SHKBP1-214ENST00000597396 UBE2BP63146 152 aa12.22□□□□□ -0.45
SHKBP1-214ENST00000597396 MYCBP2O75592 4640 aa12.22□□□□□ -0.45
SHKBP1-214ENST00000597396 E9PLD3 99 aa12.21□□□□□ -0.45
SHKBP1-214ENST00000597396 SND1-IT1Q9HBX3 110 aa12.21□□□□□ -0.45
SHKBP1-214ENST00000597396 C22orf24Q9Y442 160 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms