RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 SDIM1Q6ZPB5 146 aa11.71□□□□□ -0.53
CCDC40-213ENST00000574933 EPPK1P58107 5090 aaKnown RBP11.71□□□□□ -0.53
CCDC40-213ENST00000574933 TRBV30A0A0K0K1B3 111 aa11.7□□□□□ -0.54
CCDC40-213ENST00000574933 LINC01620Q4KN68 170 aa11.7□□□□□ -0.54
CCDC40-213ENST00000574933 C10orf25Q5T742 122 aa11.7□□□□□ -0.54
CCDC40-213ENST00000574933 UNQ6190/PRO20217Q6UXQ8 127 aa11.7□□□□□ -0.54
CCDC40-213ENST00000574933 DYNC1H1Q14204 4646 aaKnown RBP11.69□□□□□ -0.54
CCDC40-213ENST00000574933 C20orf202A1L168 122 aa11.69□□□□□ -0.54
CCDC40-213ENST00000574933 AKR1D1P51857 326 aa11.69□□□□□ -0.54
CCDC40-213ENST00000574933 C2orf82Q6UX34 121 aa11.69□□□□□ -0.54
CCDC40-213ENST00000574933 Q6ZSA8 131 aa11.69□□□□□ -0.54
CCDC40-213ENST00000574933 PKIGQ9Y2B9 76 aa11.69□□□□□ -0.54
CCDC40-213ENST00000574933 CKS1BP61024 79 aa11.68□□□□□ -0.54
CCDC40-213ENST00000574933 C6orf48Q9UBA6 75 aa11.68□□□□□ -0.54
CCDC40-213ENST00000574933 LRP1BQ9NZR2 4599 aa11.66□□□□□ -0.54
CCDC40-213ENST00000574933 TLX1NBP0CAT3 122 aa11.66□□□□□ -0.54
CCDC40-213ENST00000574933 LEPROTO15243 131 aa11.65□□□□□ -0.54
CCDC40-213ENST00000574933 HERVK_113P61574 105 aa11.65□□□□□ -0.54
CCDC40-213ENST00000574933 CIRBPQ14011 172 aaKnown RBP11.65□□□□□ -0.54
CCDC40-213ENST00000574933 SFTA2Q6UW10 78 aa11.65□□□□□ -0.54
CCDC40-213ENST00000574933 TMA7Q9Y2S6 64 aaKnown RBP11.65□□□□□ -0.54
CCDC40-213ENST00000574933 LOC107984640A0A0U1RRK4 108 aa11.64□□□□□ -0.55
CCDC40-213ENST00000574933 PLEKHB2Q96CS7 222 aa11.64□□□□□ -0.55
CCDC40-213ENST00000574933 ZNF625Q96I27 306 aaPredicted RBP11.64□□□□□ -0.55
CCDC40-213ENST00000574933 FAM30AQ9NZY2 134 aa11.64□□□□□ -0.55
CCDC40-213ENST00000574933 E9PLD3 99 aa11.63□□□□□ -0.55
CCDC40-213ENST00000574933 CDK2AP2O75956 126 aa11.61□□□□□ -0.55
CCDC40-213ENST00000574933 A0A096LNI7 61 aa11.6□□□□□ -0.55
CCDC40-213ENST00000574933 TSPEAR-AS2P59090 65 aa11.6□□□□□ -0.55
CCDC40-213ENST00000574933 C9orf116Q5BN46 136 aaPredicted RBP11.6□□□□□ -0.55
CCDC40-213ENST00000574933 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.6□□□□□ -0.55
CCDC40-213ENST00000574933 DNAH8Q96JB1 4490 aa11.6□□□□□ -0.55
CCDC40-213ENST00000574933 NDUFC2-KCTD14E9PQ53 114 aa11.59□□□□□ -0.55
CCDC40-213ENST00000574933 J3QQQ9 107 aa11.59□□□□□ -0.55
CCDC40-213ENST00000574933 PTTG1IPP53801 180 aa11.59□□□□□ -0.55
CCDC40-213ENST00000574933 STPG4Q8N801 248 aa11.59□□□□□ -0.55
CCDC40-213ENST00000574933 SPACA4Q8TDM5 124 aa11.59□□□□□ -0.55
CCDC40-213ENST00000574933 LINC00474Q9P2X8 69 aa11.59□□□□□ -0.55
CCDC40-213ENST00000574933 PANO1I0J062 215 aa11.58□□□□□ -0.56
CCDC40-213ENST00000574933 NMUP48645 174 aa11.58□□□□□ -0.56
CCDC40-213ENST00000574933 XGP55808 180 aa11.58□□□□□ -0.56
CCDC40-213ENST00000574933 NDUFA12Q9UI09 145 aa11.58□□□□□ -0.56
CCDC40-213ENST00000574933 HERV-K104P63124 156 aa11.57□□□□□ -0.56
CCDC40-213ENST00000574933 Q6ZRP5 223 aa11.57□□□□□ -0.56
CCDC40-213ENST00000574933 MYMXA0A1B0GTQ4 84 aa11.56□□□□□ -0.56
CCDC40-213ENST00000574933 CHTF8P0CG12 524 aa11.56□□□□□ -0.56
CCDC40-213ENST00000574933 RPL18AQ02543 176 aaKnown RBP11.56□□□□□ -0.56
CCDC40-213ENST00000574933 COX17Q14061 63 aa11.56□□□□□ -0.56
CCDC40-213ENST00000574933 ATOH7Q8N100 152 aa11.56□□□□□ -0.56
CCDC40-213ENST00000574933 IGKV2-24A0A0C4DH68 120 aa11.55□□□□□ -0.56
CCDC40-213ENST00000574933 LGALS3P17931 250 aaKnown RBP11.55□□□□□ -0.56
CCDC40-213ENST00000574933 GAGE2BQ13066 116 aa11.55□□□□□ -0.56
CCDC40-213ENST00000574933 ERG28Q9UKR5 140 aa11.55□□□□□ -0.56
CCDC40-213ENST00000574933 BIRC6Q9NR09 4857 aa11.55□□□□□ -0.56
CCDC40-213ENST00000574933 IGKV2D-26A0A0A0MRZ7 120 aa11.54□□□□□ -0.56
CCDC40-213ENST00000574933 SCGB1D1O95968 90 aa11.54□□□□□ -0.56
CCDC40-213ENST00000574933 ANKRD39Q53RE8 183 aa11.54□□□□□ -0.56
CCDC40-213ENST00000574933 EPM2AB3EWF7 344 aa11.53□□□□□ -0.56
CCDC40-213ENST00000574933 JOSD1Q15040 202 aaPredicted RBP11.53□□□□□ -0.56
CCDC40-213ENST00000574933 SCXQ7RTU7 201 aa11.53□□□□□ -0.56
CCDC40-213ENST00000574933 CIRBP-AS1Q8TBR5 109 aa11.53□□□□□ -0.56
CCDC40-213ENST00000574933 PLAC8Q9NZF1 115 aa11.53□□□□□ -0.56
CCDC40-213ENST00000574933 MAJINQ3KP22 176 aa11.52□□□□□ -0.57
CCDC40-213ENST00000574933 APOBP04114 4563 aaKnown RBP11.52□□□□□ -0.57
CCDC40-213ENST00000574933 A0A087WYN8 130 aa11.51□□□□□ -0.57
CCDC40-213ENST00000574933 LINC00587B1AMM8 73 aa11.51□□□□□ -0.57
CCDC40-213ENST00000574933 GAGE2EQ4V326 116 aa11.51□□□□□ -0.57
CCDC40-213ENST00000574933 GAGE2DQ9UEU5 116 aa11.51□□□□□ -0.57
CCDC40-213ENST00000574933 C9orf129Q5T035 196 aaKnown RBP11.5□□□□□ -0.57
CCDC40-213ENST00000574933 PFN2P35080 140 aa11.49□□□□□ -0.57
CCDC40-213ENST00000574933 HSBP1L1C9JCN9 74 aa11.48□□□□□ -0.57
CCDC40-213ENST00000574933 HAMPP81172 84 aa11.47□□□□□ -0.57
CCDC40-213ENST00000574933 MEIG1Q5JSS6 88 aa11.47□□□□□ -0.57
CCDC40-213ENST00000574933 DPH3Q96FX2 82 aa11.47□□□□□ -0.57
CCDC40-213ENST00000574933 A0A0J9YXY3 114 aa11.46□□□□□ -0.57
CCDC40-213ENST00000574933 A0A1W2PNN7 141 aa11.46□□□□□ -0.57
CCDC40-213ENST00000574933 ZNF815PA8K554 130 aa11.46□□□□□ -0.57
CCDC40-213ENST00000574933 SMIM13P0DJ93 91 aa11.46□□□□□ -0.57
CCDC40-213ENST00000574933 TTTY13Q9BZ97 58 aa11.46□□□□□ -0.57
CCDC40-213ENST00000574933 KIAA1109Q2LD37 5005 aa11.46□□□□□ -0.58
CCDC40-213ENST00000574933 LINC00158P58513 81 aa11.45□□□□□ -0.58
CCDC40-213ENST00000574933 PYY3Q5JQD4 70 aa11.45□□□□□ -0.58
CCDC40-213ENST00000574933 SND1-IT1Q9HBX3 110 aa11.45□□□□□ -0.58
CCDC40-213ENST00000574933 XAGE1AQ9HD64 81 aa11.45□□□□□ -0.58
CCDC40-213ENST00000574933 PLA2G2DQ9UNK4 145 aa11.45□□□□□ -0.58
CCDC40-213ENST00000574933 KRTAP7-1Q8IUC3 87 aa11.44□□□□□ -0.58
CCDC40-213ENST00000574933 TIMM17BO60830 172 aa11.43□□□□□ -0.58
CCDC40-213ENST00000574933 PCP2Q8IVA1 136 aa11.43□□□□□ -0.58
CCDC40-213ENST00000574933 RYR1P21817 5038 aa11.43□□□□□ -0.58
CCDC40-213ENST00000574933 LOC107984156A0A0G2JMH3 177 aa11.42□□□□□ -0.58
CCDC40-213ENST00000574933 FAM168BA1KXE4 195 aa11.42□□□□□ -0.58
CCDC40-213ENST00000574933 ARL17AQ8IVW1 177 aa11.42□□□□□ -0.58
CCDC40-213ENST00000574933 MIR7-3HGQ8N6C7 128 aa11.42□□□□□ -0.58
CCDC40-213ENST00000574933 HSPG2P98160 4391 aa11.42□□□□□ -0.58
CCDC40-213ENST00000574933 A0A0U1RRA0 63 aa11.41□□□□□ -0.58
CCDC40-213ENST00000574933 LITAFQ99732 161 aa11.41□□□□□ -0.58
CCDC40-213ENST00000574933 IGLV5-37A0A075B6J1 123 aa11.4□□□□□ -0.58
CCDC40-213ENST00000574933 SERTAD4-AS1Q5TG53 156 aa11.39□□□□□ -0.59
CCDC40-213ENST00000574933 VAMP8Q9BV40 100 aa11.39□□□□□ -0.59
CCDC40-213ENST00000574933 TP73-AS1Q9UF72 201 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms