RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 MAP1LC3CQ9BXW4 147 aa14.04□□□□□ -0.16
CLN3-234ENST00000568472 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP14.04□□□□□ -0.16
CLN3-234ENST00000568472 SPINK8P0C7L1 97 aa14.03□□□□□ -0.16
CLN3-234ENST00000568472 TMEM170BQ5T4T1 132 aa14.03□□□□□ -0.16
CLN3-234ENST00000568472 CIRBP-AS1Q8TBR5 109 aa14.03□□□□□ -0.16
CLN3-234ENST00000568472 SPACA4Q8TDM5 124 aa14.03□□□□□ -0.16
CLN3-234ENST00000568472 COX7B2Q8TF08 81 aa14.03□□□□□ -0.16
CLN3-234ENST00000568472 HERC2O95714 4834 aa14.02□□□□□ -0.16
CLN3-234ENST00000568472 ODF1Q14990 250 aa14.02□□□□□ -0.17
CLN3-234ENST00000568472 C10orf25Q5T742 122 aa14.02□□□□□ -0.17
CLN3-234ENST00000568472 Q8N1X5 172 aa14.02□□□□□ -0.17
CLN3-234ENST00000568472 IGLV5-39A0A0G2JS06 123 aa14.01□□□□□ -0.17
CLN3-234ENST00000568472 TLX1NBP0CAT3 122 aa14.01□□□□□ -0.17
CLN3-234ENST00000568472 C2orf82Q6UX34 121 aa14.01□□□□□ -0.17
CLN3-234ENST00000568472 C6orf48Q9UBA6 75 aa14.01□□□□□ -0.17
CLN3-234ENST00000568472 HSPG2P98160 4391 aa14□□□□□ -0.17
CLN3-234ENST00000568472 H0Y8G0 127 aa14□□□□□ -0.17
CLN3-234ENST00000568472 PANO1I0J062 215 aa14□□□□□ -0.17
CLN3-234ENST00000568472 HAMPP81172 84 aa14□□□□□ -0.17
CLN3-234ENST00000568472 A0A096LNI7 61 aa13.99□□□□□ -0.17
CLN3-234ENST00000568472 IGKV2-24A0A0C4DH68 120 aa13.99□□□□□ -0.17
CLN3-234ENST00000568472 CHTF8P0CG12 524 aa13.99□□□□□ -0.17
CLN3-234ENST00000568472 PLNP26678 52 aa13.99□□□□□ -0.17
CLN3-234ENST00000568472 PTTG1IPP53801 180 aa13.99□□□□□ -0.17
CLN3-234ENST00000568472 MAJINQ3KP22 176 aa13.98□□□□□ -0.17
CLN3-234ENST00000568472 FAM229AH3BQW9 127 aa13.97□□□□□ -0.17
CLN3-234ENST00000568472 GAGE2BQ13066 116 aa13.97□□□□□ -0.17
CLN3-234ENST00000568472 SFTA2Q6UW10 78 aa13.97□□□□□ -0.17
CLN3-234ENST00000568472 PLAC8Q9NZF1 115 aa13.97□□□□□ -0.17
CLN3-234ENST00000568472 A0A087WYN8 130 aa13.96□□□□□ -0.17
CLN3-234ENST00000568472 RPL18AQ02543 176 aaKnown RBP13.96□□□□□ -0.17
CLN3-234ENST00000568472 TMEM223A0PJW6 202 aa13.95□□□□□ -0.18
CLN3-234ENST00000568472 NDUFC2-KCTD14E9PQ53 114 aa13.95□□□□□ -0.18
CLN3-234ENST00000568472 DPM2O94777 84 aa13.95□□□□□ -0.18
CLN3-234ENST00000568472 SMR3BP02814 79 aaPredicted RBP13.95□□□□□ -0.18
CLN3-234ENST00000568472 STPG4Q8N801 248 aa13.94□□□□□ -0.18
CLN3-234ENST00000568472 EPM2AB3EWF7 344 aa13.93□□□□□ -0.18
CLN3-234ENST00000568472 SYS1-DBNDD2H3BUS1 97 aa13.93□□□□□ -0.18
CLN3-234ENST00000568472 PET117Q6UWS5 81 aa13.92□□□□□ -0.18
CLN3-234ENST00000568472 Q6ZRP5 223 aa13.92□□□□□ -0.18
CLN3-234ENST00000568472 IGKCP01834 107 aa13.91□□□□□ -0.18
CLN3-234ENST00000568472 S100A6P06703 90 aa13.9□□□□□ -0.18
CLN3-234ENST00000568472 C9orf116Q5BN46 136 aaPredicted RBP13.9□□□□□ -0.18
CLN3-234ENST00000568472 LINC00528Q8N1L1 170 aa13.9□□□□□ -0.18
CLN3-234ENST00000568472 PLA2G1BP04054 148 aaKnown RBP13.88□□□□□ -0.19
CLN3-234ENST00000568472 HERVK_113P61574 105 aa13.88□□□□□ -0.19
CLN3-234ENST00000568472 GAGE2EQ4V326 116 aa13.88□□□□□ -0.19
CLN3-234ENST00000568472 Q5VSD8 79 aa13.88□□□□□ -0.19
CLN3-234ENST00000568472 GAGE2DQ9UEU5 116 aa13.88□□□□□ -0.19
CLN3-234ENST00000568472 LINC01545Q5VT33 79 aa13.87□□□□□ -0.19
CLN3-234ENST00000568472 PMCHL2Q9BQD1 86 aa13.87□□□□□ -0.19
CLN3-234ENST00000568472 KRTAP17-1Q9BYP8 105 aa13.87□□□□□ -0.19
CLN3-234ENST00000568472 C3orf79P0CE67 100 aa13.86□□□□□ -0.19
CLN3-234ENST00000568472 S100A2P29034 98 aa13.85□□□□□ -0.19
CLN3-234ENST00000568472 KRTDAPP60985 99 aa13.85□□□□□ -0.19
CLN3-234ENST00000568472 COX17Q14061 63 aa13.85□□□□□ -0.19
CLN3-234ENST00000568472 C7orf33Q8WU49 177 aa13.85□□□□□ -0.19
CLN3-234ENST00000568472 AKR1D1P51857 326 aa13.84□□□□□ -0.19
CLN3-234ENST00000568472 PLEKHB2Q96CS7 222 aa13.84□□□□□ -0.19
CLN3-234ENST00000568472 ZNF625Q96I27 306 aaPredicted RBP13.84□□□□□ -0.19
CLN3-234ENST00000568472 C20orf202A1L168 122 aa13.83□□□□□ -0.2
CLN3-234ENST00000568472 HIST3H2BBQ8N257 126 aa13.83□□□□□ -0.2
CLN3-234ENST00000568472 A0A1W2PNN7 141 aa13.82□□□□□ -0.2
CLN3-234ENST00000568472 LEPROTO15243 131 aa13.82□□□□□ -0.2
CLN3-234ENST00000568472 HERV-K104P63124 156 aa13.82□□□□□ -0.2
CLN3-234ENST00000568472 ERG28Q9UKR5 140 aa13.81□□□□□ -0.2
CLN3-234ENST00000568472 LINC00587B1AMM8 73 aa13.8□□□□□ -0.2
CLN3-234ENST00000568472 MYMXA0A1B0GTQ4 84 aa13.79□□□□□ -0.2
CLN3-234ENST00000568472 C9orf129Q5T035 196 aaKnown RBP13.79□□□□□ -0.2
CLN3-234ENST00000568472 HIST1H2BLQ99880 126 aa13.79□□□□□ -0.2
CLN3-234ENST00000568472 KRTAP4-5Q9BYR2 181 aa13.79□□□□□ -0.2
CLN3-234ENST00000568472 NDUFA12Q9UI09 145 aa13.79□□□□□ -0.2
CLN3-234ENST00000568472 FAT1Q14517 4588 aa13.78□□□□□ -0.2
CLN3-234ENST00000568472 J3QQQ9 107 aa13.78□□□□□ -0.2
CLN3-234ENST00000568472 PFN2P35080 140 aa13.78□□□□□ -0.2
CLN3-234ENST00000568472 NMUP48645 174 aa13.78□□□□□ -0.2
CLN3-234ENST00000568472 RPL37AP61513 92 aaKnown RBP13.78□□□□□ -0.2
CLN3-234ENST00000568472 E9PLD3 99 aa13.77□□□□□ -0.21
CLN3-234ENST00000568472 XAGE1AQ9HD64 81 aa13.77□□□□□ -0.21
CLN3-234ENST00000568472 SNRPEP62304 92 aaKnown RBP13.76□□□□□ -0.21
CLN3-234ENST00000568472 FAM168BA1KXE4 195 aa13.75□□□□□ -0.21
CLN3-234ENST00000568472 LGALS3P17931 250 aaKnown RBP13.75□□□□□ -0.21
CLN3-234ENST00000568472 C5orf52A6NGY3 159 aa13.74□□□□□ -0.21
CLN3-234ENST00000568472 FAM19A5Q7Z5A7 132 aaPredicted RBP13.74□□□□□ -0.21
CLN3-234ENST00000568472 PLA2G2DQ9UNK4 145 aa13.74□□□□□ -0.21
CLN3-234ENST00000568472 LINC00158P58513 81 aa13.73□□□□□ -0.21
CLN3-234ENST00000568472 TSPEAR-AS2P59090 65 aa13.72□□□□□ -0.21
CLN3-234ENST00000568472 KRTAP10-4P60372 401 aaPredicted RBP13.71□□□□□ -0.21
CLN3-234ENST00000568472 MEIG1Q5JSS6 88 aa13.71□□□□□ -0.21
CLN3-234ENST00000568472 SND1-IT1Q9HBX3 110 aa13.71□□□□□ -0.21
CLN3-234ENST00000568472 VPS13BQ7Z7G8 4022 aa13.71□□□□□ -0.22
CLN3-234ENST00000568472 M0QXV9 152 aa13.7□□□□□ -0.22
CLN3-234ENST00000568472 INAFM2P0DMQ5 153 aa13.7□□□□□ -0.22
CLN3-234ENST00000568472 LBHQ53QV2 105 aaPredicted RBP13.7□□□□□ -0.22
CLN3-234ENST00000568472 KRTAP7-1Q8IUC3 87 aa13.7□□□□□ -0.22
CLN3-234ENST00000568472 TP73-AS1Q9UF72 201 aa13.7□□□□□ -0.22
CLN3-234ENST00000568472 PHF5AQ7RTV0 110 aaKnown RBP13.69□□□□□ -0.22
CLN3-234ENST00000568472 SERTAD4-AS1Q5TG53 156 aa13.68□□□□□ -0.22
CLN3-234ENST00000568472 C22orf24Q9Y442 160 aa13.68□□□□□ -0.22
CLN3-234ENST00000568472 SMIM13P0DJ93 91 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms