RNA–Protein interactions for RNA: ENST00000566816.1

CLN3-224, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 570 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-224ENST00000566816 KRTDAPP60985 99 aa7.17□□□□□ -1.26
CLN3-224ENST00000566816 CKS1BP61024 79 aa7.17□□□□□ -1.26
CLN3-224ENST00000566816 SDIM1Q6ZPB5 146 aa7.17□□□□□ -1.26
CLN3-224ENST00000566816 COX7B2Q8TF08 81 aa7.17□□□□□ -1.26
CLN3-224ENST00000566816 CARD19Q96LW7 228 aa7.17□□□□□ -1.26
CLN3-224ENST00000566816 TLX1NBP0CAT3 122 aa7.16□□□□□ -1.26
CLN3-224ENST00000566816 HERVK_113P61574 105 aa7.16□□□□□ -1.26
CLN3-224ENST00000566816 Q6ZRU5 148 aa7.16□□□□□ -1.26
CLN3-224ENST00000566816 LINC00526Q96FQ7 95 aa7.16□□□□□ -1.26
CLN3-224ENST00000566816 UNQ6190/PRO20217Q6UXQ8 127 aa7.15□□□□□ -1.26
CLN3-224ENST00000566816 TOMM7Q9P0U1 55 aa7.15□□□□□ -1.26
CLN3-224ENST00000566816 KRTAP10-1P60331 282 aa7.14□□□□□ -1.27
CLN3-224ENST00000566816 Q6ZSA8 131 aa7.14□□□□□ -1.27
CLN3-224ENST00000566816 PLEKHB2Q96CS7 222 aa7.14□□□□□ -1.27
CLN3-224ENST00000566816 PMCHL2Q9BQD1 86 aa7.14□□□□□ -1.27
CLN3-224ENST00000566816 LINC00474Q9P2X8 69 aa7.14□□□□□ -1.27
CLN3-224ENST00000566816 LOC107984640A0A0U1RRK4 108 aa7.13□□□□□ -1.27
CLN3-224ENST00000566816 E9PLD3 99 aa7.13□□□□□ -1.27
CLN3-224ENST00000566816 LEPROTO15243 131 aa7.13□□□□□ -1.27
CLN3-224ENST00000566816 CIRBPQ14011 172 aaKnown RBP7.13□□□□□ -1.27
CLN3-224ENST00000566816 C10orf25Q5T742 122 aa7.13□□□□□ -1.27
CLN3-224ENST00000566816 C6orf48Q9UBA6 75 aa7.13□□□□□ -1.27
CLN3-224ENST00000566816 LINC00587B1AMM8 73 aa7.12□□□□□ -1.27
CLN3-224ENST00000566816 FUSP35637 526 aaKnown RBP eCLIP7.12□□□□□ -1.27
CLN3-224ENST00000566816 NMUP48645 174 aa7.12□□□□□ -1.27
CLN3-224ENST00000566816 COX17Q14061 63 aa7.12□□□□□ -1.27
CLN3-224ENST00000566816 C2orf82Q6UX34 121 aa7.12□□□□□ -1.27
CLN3-224ENST00000566816 ZNF625Q96I27 306 aaPredicted RBP7.12□□□□□ -1.27
CLN3-224ENST00000566816 NDUFC2-KCTD14E9PQ53 114 aa7.11□□□□□ -1.27
CLN3-224ENST00000566816 CDK2AP2O75956 126 aa7.11□□□□□ -1.27
CLN3-224ENST00000566816 HERV-K104P63124 156 aa7.11□□□□□ -1.27
CLN3-224ENST00000566816 APOBP04114 4563 aaKnown RBP7.11□□□□□ -1.27
CLN3-224ENST00000566816 BIRC6Q9NR09 4857 aa7.11□□□□□ -1.27
CLN3-224ENST00000566816 MYMXA0A1B0GTQ4 84 aa7.1□□□□□ -1.27
CLN3-224ENST00000566816 J3QQQ9 107 aa7.1□□□□□ -1.27
CLN3-224ENST00000566816 EPM2AB3EWF7 344 aa7.09□□□□□ -1.27
CLN3-224ENST00000566816 PTTG1IPP53801 180 aa7.09□□□□□ -1.27
CLN3-224ENST00000566816 LINC01620Q4KN68 170 aa7.09□□□□□ -1.27
CLN3-224ENST00000566816 STPG4Q8N801 248 aa7.09□□□□□ -1.27
CLN3-224ENST00000566816 NDUFA12Q9UI09 145 aa7.09□□□□□ -1.27
CLN3-224ENST00000566816 TMA7Q9Y2S6 64 aaKnown RBP7.09□□□□□ -1.27
CLN3-224ENST00000566816 JOSD1Q15040 202 aaPredicted RBP7.08□□□□□ -1.28
CLN3-224ENST00000566816 SPACA4Q8TDM5 124 aa7.08□□□□□ -1.28
CLN3-224ENST00000566816 FAM30AQ9NZY2 134 aa7.08□□□□□ -1.28
CLN3-224ENST00000566816 SCGB1D1O95968 90 aa7.07□□□□□ -1.28
CLN3-224ENST00000566816 LGALS3P17931 250 aaKnown RBP7.07□□□□□ -1.28
CLN3-224ENST00000566816 XGP55808 180 aa7.07□□□□□ -1.28
CLN3-224ENST00000566816 Q6ZRP5 223 aa7.07□□□□□ -1.28
CLN3-224ENST00000566816 A0A096LNI7 61 aa7.06□□□□□ -1.28
CLN3-224ENST00000566816 HSBP1L1C9JCN9 74 aa7.06□□□□□ -1.28
CLN3-224ENST00000566816 TSPEAR-AS2P59090 65 aa7.06□□□□□ -1.28
CLN3-224ENST00000566816 C9orf116Q5BN46 136 aaPredicted RBP7.06□□□□□ -1.28
CLN3-224ENST00000566816 PLAC8Q9NZF1 115 aa7.06□□□□□ -1.28
CLN3-224ENST00000566816 ERG28Q9UKR5 140 aa7.06□□□□□ -1.28
CLN3-224ENST00000566816 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.06□□□□□ -1.28
CLN3-224ENST00000566816 GAGE2BQ13066 116 aa7.05□□□□□ -1.28
CLN3-224ENST00000566816 RYR1P21817 5038 aa7.04□□□□□ -1.28
CLN3-224ENST00000566816 HSPG2P98160 4391 aa7.04□□□□□ -1.28
CLN3-224ENST00000566816 PANO1I0J062 215 aa7.04□□□□□ -1.28
CLN3-224ENST00000566816 RPL18AQ02543 176 aaKnown RBP7.04□□□□□ -1.28
CLN3-224ENST00000566816 ANKRD39Q53RE8 183 aa7.04□□□□□ -1.28
CLN3-224ENST00000566816 ATOH7Q8N100 152 aa7.04□□□□□ -1.28
CLN3-224ENST00000566816 CIRBP-AS1Q8TBR5 109 aa7.04□□□□□ -1.28
CLN3-224ENST00000566816 DPH3Q96FX2 82 aa7.04□□□□□ -1.28
CLN3-224ENST00000566816 PLA2G2DQ9UNK4 145 aa7.04□□□□□ -1.28
CLN3-224ENST00000566816 A0A087WYN8 130 aa7.03□□□□□ -1.28
CLN3-224ENST00000566816 IGKV2D-26A0A0A0MRZ7 120 aa7.03□□□□□ -1.28
CLN3-224ENST00000566816 IGKV2-24A0A0C4DH68 120 aa7.03□□□□□ -1.28
CLN3-224ENST00000566816 LOC107984156A0A0G2JMH3 177 aa7.03□□□□□ -1.28
CLN3-224ENST00000566816 TIMM17BO60830 172 aa7.03□□□□□ -1.28
CLN3-224ENST00000566816 MAJINQ3KP22 176 aa7.03□□□□□ -1.28
CLN3-224ENST00000566816 SCXQ7RTU7 201 aa7.03□□□□□ -1.28
CLN3-224ENST00000566816 ARL17AQ8IVW1 177 aa7.03□□□□□ -1.28
CLN3-224ENST00000566816 KIAA1109Q2LD37 5005 aa7.02□□□□□ -1.29
CLN3-224ENST00000566816 A0A0J9YXY3 114 aa7.02□□□□□ -1.29
CLN3-224ENST00000566816 CHTF8P0CG12 524 aa7.02□□□□□ -1.29
CLN3-224ENST00000566816 PFN2P35080 140 aa7.02□□□□□ -1.29
CLN3-224ENST00000566816 GAGE2EQ4V326 116 aa7.02□□□□□ -1.29
CLN3-224ENST00000566816 GAGE2DQ9UEU5 116 aa7.02□□□□□ -1.29
CLN3-224ENST00000566816 ZNF815PA8K554 130 aa7.01□□□□□ -1.29
CLN3-224ENST00000566816 SMIM13P0DJ93 91 aa7.01□□□□□ -1.29
CLN3-224ENST00000566816 LINC00158P58513 81 aa7.01□□□□□ -1.29
CLN3-224ENST00000566816 MEIG1Q5JSS6 88 aa7.01□□□□□ -1.29
CLN3-224ENST00000566816 C9orf129Q5T035 196 aaKnown RBP7.01□□□□□ -1.29
CLN3-224ENST00000566816 SND1-IT1Q9HBX3 110 aa7.01□□□□□ -1.29
CLN3-224ENST00000566816 A0A1W2PNN7 141 aa7□□□□□ -1.29
CLN3-224ENST00000566816 PYY3Q5JQD4 70 aa7□□□□□ -1.29
CLN3-224ENST00000566816 FAT1Q14517 4588 aa7□□□□□ -1.29
CLN3-224ENST00000566816 IGLV5-37A0A075B6J1 123 aa6.99□□□□□ -1.29
CLN3-224ENST00000566816 DLEU1O43261 78 aa6.99□□□□□ -1.29
CLN3-224ENST00000566816 Q6ZVH6 145 aa6.99□□□□□ -1.29
CLN3-224ENST00000566816 PPDPFQ9H3Y8 114 aa6.99□□□□□ -1.29
CLN3-224ENST00000566816 XAGE1AQ9HD64 81 aa6.99□□□□□ -1.29
CLN3-224ENST00000566816 TP73-AS1Q9UF72 201 aa6.99□□□□□ -1.29
CLN3-224ENST00000566816 RPL24P83731 157 aaKnown RBP6.98□□□□□ -1.29
CLN3-224ENST00000566816 PCP2Q8IVA1 136 aa6.98□□□□□ -1.29
CLN3-224ENST00000566816 MIR7-3HGQ8N6C7 128 aa6.98□□□□□ -1.29
CLN3-224ENST00000566816 VAMP8Q9BV40 100 aa6.98□□□□□ -1.29
CLN3-224ENST00000566816 COX8AP10176 69 aa6.97□□□□□ -1.29
CLN3-224ENST00000566816 LBHQ53QV2 105 aaPredicted RBP6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms