RNA–Protein interactions for RNA: ENST00000566016.5

SHCBP1-205, Transcript of SHC binding and spindle associated 1, humanhuman

TSL 1 (best)

Gene SHCBP1, Length 1,482 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHCBP1-205ENST00000566016 LEPROTL1O95214 131 aa13.39□□□□□ -0.27
SHCBP1-205ENST00000566016 C10orf25Q5T742 122 aa13.39□□□□□ -0.27
SHCBP1-205ENST00000566016 SRRM2Q9UQ35 2752 aaKnown RBP13.39□□□□□ -0.27
SHCBP1-205ENST00000566016 IGKV2-24A0A0C4DH68 120 aa13.38□□□□□ -0.27
SHCBP1-205ENST00000566016 FAM229AH3BQW9 127 aa13.38□□□□□ -0.27
SHCBP1-205ENST00000566016 NUPR1O60356 82 aa13.38□□□□□ -0.27
SHCBP1-205ENST00000566016 CXCL5P42830 114 aa13.38□□□□□ -0.27
SHCBP1-205ENST00000566016 PTTG1IPP53801 180 aa13.38□□□□□ -0.27
SHCBP1-205ENST00000566016 Q5VSD8 79 aa13.38□□□□□ -0.27
SHCBP1-205ENST00000566016 PLAC8Q9NZF1 115 aa13.38□□□□□ -0.27
SHCBP1-205ENST00000566016 TOMM7Q9P0U1 55 aa13.38□□□□□ -0.27
SHCBP1-205ENST00000566016 C6orf48Q9UBA6 75 aa13.38□□□□□ -0.27
SHCBP1-205ENST00000566016 A0A087WYN8 130 aa13.37□□□□□ -0.27
SHCBP1-205ENST00000566016 TLX1NBP0CAT3 122 aa13.37□□□□□ -0.27
SHCBP1-205ENST00000566016 ZNF22P17026 224 aaPredicted RBP13.37□□□□□ -0.27
SHCBP1-205ENST00000566016 CKS1BP61024 79 aa13.37□□□□□ -0.27
SHCBP1-205ENST00000566016 C6orf226Q5I0X4 101 aa13.37□□□□□ -0.27
SHCBP1-205ENST00000566016 C2orf82Q6UX34 121 aa13.37□□□□□ -0.27
SHCBP1-205ENST00000566016 KRTAP4-5Q9BYR2 181 aa13.37□□□□□ -0.27
SHCBP1-205ENST00000566016 LINC00528Q8N1L1 170 aa13.36□□□□□ -0.27
SHCBP1-205ENST00000566016 HSPB8Q9UJY1 196 aa13.36□□□□□ -0.27
SHCBP1-205ENST00000566016 CHTOPQ9Y3Y2 248 aaKnown RBP13.36□□□□□ -0.27
SHCBP1-205ENST00000566016 PCLOQ9Y6V0 5065 aa13.36□□□□□ -0.27
SHCBP1-205ENST00000566016 C11orf86A6NJI1 115 aa13.36□□□□□ -0.27
SHCBP1-205ENST00000566016 MAJINQ3KP22 176 aa13.36□□□□□ -0.27
SHCBP1-205ENST00000566016 IGLV5-39A0A0G2JS06 123 aa13.35□□□□□ -0.27
SHCBP1-205ENST00000566016 F8VRH5 84 aa13.35□□□□□ -0.27
SHCBP1-205ENST00000566016 SPINK8P0C7L1 97 aa13.35□□□□□ -0.27
SHCBP1-205ENST00000566016 DPH3Q96FX2 82 aa13.35□□□□□ -0.27
SHCBP1-205ENST00000566016 COX7B2Q8TF08 81 aa13.34□□□□□ -0.27
SHCBP1-205ENST00000566016 ABCA13Q86UQ4 5058 aa13.33□□□□□ -0.28
SHCBP1-205ENST00000566016 RPL18AQ02543 176 aaKnown RBP13.33□□□□□ -0.28
SHCBP1-205ENST00000566016 COA6Q5JTJ3 125 aaKnown RBP13.33□□□□□ -0.28
SHCBP1-205ENST00000566016 GAGE2BQ13066 116 aa13.32□□□□□ -0.28
SHCBP1-205ENST00000566016 STPG4Q8N801 248 aa13.32□□□□□ -0.28
SHCBP1-205ENST00000566016 VPS13BQ7Z7G8 4022 aa13.32□□□□□ -0.28
SHCBP1-205ENST00000566016 ODF1Q14990 250 aa13.31□□□□□ -0.28
SHCBP1-205ENST00000566016 TMEM170BQ5T4T1 132 aa13.31□□□□□ -0.28
SHCBP1-205ENST00000566016 NDUFC2-KCTD14E9PQ53 114 aa13.3□□□□□ -0.28
SHCBP1-205ENST00000566016 PLA2G1BP04054 148 aaKnown RBP13.3□□□□□ -0.28
SHCBP1-205ENST00000566016 FABP4P15090 132 aa13.29□□□□□ -0.28
SHCBP1-205ENST00000566016 Q6ZRP5 223 aa13.29□□□□□ -0.28
SHCBP1-205ENST00000566016 H0Y8G0 127 aa13.26□□□□□ -0.29
SHCBP1-205ENST00000566016 PLNP26678 52 aa13.26□□□□□ -0.29
SHCBP1-205ENST00000566016 C9orf116Q5BN46 136 aaPredicted RBP13.26□□□□□ -0.29
SHCBP1-205ENST00000566016 SFTA2Q6UW10 78 aa13.26□□□□□ -0.29
SHCBP1-205ENST00000566016 MAP1LC3CQ9BXW4 147 aa13.26□□□□□ -0.29
SHCBP1-205ENST00000566016 TMEM223A0PJW6 202 aa13.25□□□□□ -0.29
SHCBP1-205ENST00000566016 KRTAP10-4P60372 401 aaPredicted RBP13.24□□□□□ -0.29
SHCBP1-205ENST00000566016 C7orf33Q8WU49 177 aa13.23□□□□□ -0.29
SHCBP1-205ENST00000566016 GAGE2EQ4V326 116 aa13.23□□□□□ -0.29
SHCBP1-205ENST00000566016 GAGE2DQ9UEU5 116 aa13.23□□□□□ -0.29
SHCBP1-205ENST00000566016 A0A1W2PNN7 141 aa13.22□□□□□ -0.29
SHCBP1-205ENST00000566016 RPL37AP61513 92 aaKnown RBP13.22□□□□□ -0.29
SHCBP1-205ENST00000566016 DPM2O94777 84 aa13.21□□□□□ -0.3
SHCBP1-205ENST00000566016 FLG2Q5D862 2391 aaPredicted RBP13.21□□□□□ -0.3
SHCBP1-205ENST00000566016 SYS1-DBNDD2H3BUS1 97 aa13.19□□□□□ -0.3
SHCBP1-205ENST00000566016 C9orf129Q5T035 196 aaKnown RBP13.18□□□□□ -0.3
SHCBP1-205ENST00000566016 ZNF625Q96I27 306 aaPredicted RBP13.18□□□□□ -0.3
SHCBP1-205ENST00000566016 IGKCP01834 107 aa13.17□□□□□ -0.3
SHCBP1-205ENST00000566016 INAFM2P0DMQ5 153 aa13.17□□□□□ -0.3
SHCBP1-205ENST00000566016 COX17Q14061 63 aa13.16□□□□□ -0.3
SHCBP1-205ENST00000566016 PMCHL2Q9BQD1 86 aa13.16□□□□□ -0.3
SHCBP1-205ENST00000566016 FAM168BA1KXE4 195 aa13.15□□□□□ -0.3
SHCBP1-205ENST00000566016 PET117Q6UWS5 81 aa13.15□□□□□ -0.3
SHCBP1-205ENST00000566016 ERG28Q9UKR5 140 aa13.15□□□□□ -0.3
SHCBP1-205ENST00000566016 HERVK_113P61574 105 aa13.14□□□□□ -0.31
SHCBP1-205ENST00000566016 LINC01545Q5VT33 79 aa13.14□□□□□ -0.31
SHCBP1-205ENST00000566016 FAM19A5Q7Z5A7 132 aaPredicted RBP13.13□□□□□ -0.31
SHCBP1-205ENST00000566016 KRTAP7-1Q8IUC3 87 aa13.13□□□□□ -0.31
SHCBP1-205ENST00000566016 XAGE1AQ9HD64 81 aa13.13□□□□□ -0.31
SHCBP1-205ENST00000566016 C3orf79P0CE67 100 aa13.11□□□□□ -0.31
SHCBP1-205ENST00000566016 PRR3P79522 188 aaKnown RBP13.11□□□□□ -0.31
SHCBP1-205ENST00000566016 PLEKHB2Q96CS7 222 aa13.11□□□□□ -0.31
SHCBP1-205ENST00000566016 MYCBP2O75592 4640 aa13.11□□□□□ -0.31
SHCBP1-205ENST00000566016 LEPROTO15243 131 aa13.1□□□□□ -0.31
SHCBP1-205ENST00000566016 HERV-K104P63124 156 aa13.1□□□□□ -0.31
SHCBP1-205ENST00000566016 M0QXV9 152 aa13.1□□□□□ -0.31
SHCBP1-205ENST00000566016 PFN2P35080 140 aa13.1□□□□□ -0.31
SHCBP1-205ENST00000566016 PHF5AQ7RTV0 110 aaKnown RBP13.1□□□□□ -0.31
SHCBP1-205ENST00000566016 NDUFA12Q9UI09 145 aa13.09□□□□□ -0.31
SHCBP1-205ENST00000566016 PLA2G2DQ9UNK4 145 aa13.09□□□□□ -0.31
SHCBP1-205ENST00000566016 SERTAD4-AS1Q5TG53 156 aa13.08□□□□□ -0.32
SHCBP1-205ENST00000566016 MYMXA0A1B0GTQ4 84 aa13.07□□□□□ -0.32
SHCBP1-205ENST00000566016 J3QQQ9 107 aa13.07□□□□□ -0.32
SHCBP1-205ENST00000566016 TSPEAR-AS2P59090 65 aa13.07□□□□□ -0.32
SHCBP1-205ENST00000566016 KRTDAPP60985 99 aa13.07□□□□□ -0.32
SHCBP1-205ENST00000566016 HIST3H2BBQ8N257 126 aa13.07□□□□□ -0.32
SHCBP1-205ENST00000566016 TP73-AS1Q9UF72 201 aa13.07□□□□□ -0.32
SHCBP1-205ENST00000566016 S100A6P06703 90 aa13.06□□□□□ -0.32
SHCBP1-205ENST00000566016 NMUP48645 174 aa13.06□□□□□ -0.32
SHCBP1-205ENST00000566016 LINC00587B1AMM8 73 aa13.05□□□□□ -0.32
SHCBP1-205ENST00000566016 E9PLD3 99 aa13.05□□□□□ -0.32
SHCBP1-205ENST00000566016 SND1-IT1Q9HBX3 110 aa13.05□□□□□ -0.32
SHCBP1-205ENST00000566016 DMBT1Q9UGM3 2413 aaPredicted RBP13.05□□□□□ -0.32
SHCBP1-205ENST00000566016 C20orf202A1L168 122 aa13.04□□□□□ -0.32
SHCBP1-205ENST00000566016 IGLV5-37A0A075B6J1 123 aa13.04□□□□□ -0.32
SHCBP1-205ENST00000566016 HNRNPA3P51991 378 aaKnown RBP13.04□□□□□ -0.32
SHCBP1-205ENST00000566016 HIST1H2BLQ99880 126 aa13.04□□□□□ -0.32
SHCBP1-205ENST00000566016 PSORS1C2Q9UIG4 136 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms