RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 H3BRM9 83 aa10.6□□□□□ -0.71
CLK3-207ENST00000562389 HIST1H2BKO60814 126 aa10.6□□□□□ -0.71
CLK3-207ENST00000562389 ATP6V1G1O75348 118 aa10.6□□□□□ -0.71
CLK3-207ENST00000562389 HIST1H2BJP06899 126 aa10.6□□□□□ -0.71
CLK3-207ENST00000562389 HIST1H2BOP23527 126 aa10.6□□□□□ -0.71
CLK3-207ENST00000562389 HIST1H2BBP33778 126 aa10.6□□□□□ -0.71
CLK3-207ENST00000562389 HIST1H2BDP58876 126 aa10.6□□□□□ -0.71
CLK3-207ENST00000562389 HIST1H2BCP62807 126 aa10.6□□□□□ -0.71
CLK3-207ENST00000562389 HIST2H2BEQ16778 126 aa10.6□□□□□ -0.71
CLK3-207ENST00000562389 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.6□□□□□ -0.71
CLK3-207ENST00000562389 HIST1H2BHQ93079 126 aa10.6□□□□□ -0.71
CLK3-207ENST00000562389 HIST1H2BNQ99877 126 aa10.6□□□□□ -0.71
CLK3-207ENST00000562389 HIST1H2BMQ99879 126 aa10.6□□□□□ -0.71
CLK3-207ENST00000562389 NUPR1O60356 82 aa10.59□□□□□ -0.71
CLK3-207ENST00000562389 TLX1NBP0CAT3 122 aa10.59□□□□□ -0.71
CLK3-207ENST00000562389 ZNF22P17026 224 aaPredicted RBP10.59□□□□□ -0.71
CLK3-207ENST00000562389 GAGE2BQ13066 116 aa10.59□□□□□ -0.71
CLK3-207ENST00000562389 C6orf226Q5I0X4 101 aa10.59□□□□□ -0.71
CLK3-207ENST00000562389 C2orf82Q6UX34 121 aa10.59□□□□□ -0.71
CLK3-207ENST00000562389 LEPROTL1O95214 131 aa10.58□□□□□ -0.72
CLK3-207ENST00000562389 SPINK8P0C7L1 97 aa10.58□□□□□ -0.72
CLK3-207ENST00000562389 CXCL5P42830 114 aa10.58□□□□□ -0.72
CLK3-207ENST00000562389 CKS1BP61024 79 aa10.58□□□□□ -0.72
CLK3-207ENST00000562389 RPL18AQ02543 176 aaKnown RBP10.58□□□□□ -0.72
CLK3-207ENST00000562389 STPG4Q8N801 248 aa10.58□□□□□ -0.72
CLK3-207ENST00000562389 CHTOPQ9Y3Y2 248 aaKnown RBP10.58□□□□□ -0.72
CLK3-207ENST00000562389 FAT1Q14517 4588 aa10.57□□□□□ -0.72
CLK3-207ENST00000562389 C11orf86A6NJI1 115 aa10.57□□□□□ -0.72
CLK3-207ENST00000562389 PLA2G1BP04054 148 aaKnown RBP10.57□□□□□ -0.72
CLK3-207ENST00000562389 COX7B2Q8TF08 81 aa10.57□□□□□ -0.72
CLK3-207ENST00000562389 IGLV5-39A0A0G2JS06 123 aa10.55□□□□□ -0.72
CLK3-207ENST00000562389 F8VRH5 84 aa10.55□□□□□ -0.72
CLK3-207ENST00000562389 HSPB8Q9UJY1 196 aa10.55□□□□□ -0.72
CLK3-207ENST00000562389 Q6ZRP5 223 aa10.54□□□□□ -0.72
CLK3-207ENST00000562389 VPS13BQ7Z7G8 4022 aa10.53□□□□□ -0.72
CLK3-207ENST00000562389 NDUFC2-KCTD14E9PQ53 114 aa10.53□□□□□ -0.72
CLK3-207ENST00000562389 TMEM170BQ5T4T1 132 aa10.53□□□□□ -0.72
CLK3-207ENST00000562389 ABCA13Q86UQ4 5058 aa10.53□□□□□ -0.72
CLK3-207ENST00000562389 FABP4P15090 132 aa10.52□□□□□ -0.73
CLK3-207ENST00000562389 KRTAP10-4P60372 401 aaPredicted RBP10.52□□□□□ -0.73
CLK3-207ENST00000562389 ODF1Q14990 250 aa10.52□□□□□ -0.73
CLK3-207ENST00000562389 C9orf116Q5BN46 136 aaPredicted RBP10.52□□□□□ -0.73
CLK3-207ENST00000562389 RPL37AP61513 92 aaKnown RBP10.51□□□□□ -0.73
CLK3-207ENST00000562389 A0A1W2PNN7 141 aa10.5□□□□□ -0.73
CLK3-207ENST00000562389 H0Y8G0 127 aa10.5□□□□□ -0.73
CLK3-207ENST00000562389 INAFM2P0DMQ5 153 aa10.5□□□□□ -0.73
CLK3-207ENST00000562389 GAGE2EQ4V326 116 aa10.5□□□□□ -0.73
CLK3-207ENST00000562389 COA6Q5JTJ3 125 aaKnown RBP10.5□□□□□ -0.73
CLK3-207ENST00000562389 C7orf33Q8WU49 177 aa10.5□□□□□ -0.73
CLK3-207ENST00000562389 GAGE2DQ9UEU5 116 aa10.5□□□□□ -0.73
CLK3-207ENST00000562389 TMEM223A0PJW6 202 aa10.49□□□□□ -0.73
CLK3-207ENST00000562389 MAP1LC3CQ9BXW4 147 aa10.47□□□□□ -0.73
CLK3-207ENST00000562389 PLNP26678 52 aa10.46□□□□□ -0.73
CLK3-207ENST00000562389 C9orf129Q5T035 196 aaKnown RBP10.46□□□□□ -0.73
CLK3-207ENST00000562389 SFTA2Q6UW10 78 aa10.46□□□□□ -0.73
CLK3-207ENST00000562389 FAM168BA1KXE4 195 aa10.44□□□□□ -0.74
CLK3-207ENST00000562389 DPM2O94777 84 aa10.43□□□□□ -0.74
CLK3-207ENST00000562389 ZNF625Q96I27 306 aaPredicted RBP10.43□□□□□ -0.74
CLK3-207ENST00000562389 SYS1-DBNDD2H3BUS1 97 aa10.42□□□□□ -0.74
CLK3-207ENST00000562389 IGKCP01834 107 aa10.42□□□□□ -0.74
CLK3-207ENST00000562389 FAM19A5Q7Z5A7 132 aaPredicted RBP10.42□□□□□ -0.74
CLK3-207ENST00000562389 KRTAP7-1Q8IUC3 87 aa10.42□□□□□ -0.74
CLK3-207ENST00000562389 PMCHL2Q9BQD1 86 aa10.42□□□□□ -0.74
CLK3-207ENST00000562389 PRR3P79522 188 aaKnown RBP10.41□□□□□ -0.74
CLK3-207ENST00000562389 PHF5AQ7RTV0 110 aaKnown RBP10.41□□□□□ -0.74
CLK3-207ENST00000562389 XAGE1AQ9HD64 81 aa10.41□□□□□ -0.74
CLK3-207ENST00000562389 COX17Q14061 63 aa10.4□□□□□ -0.74
CLK3-207ENST00000562389 ERG28Q9UKR5 140 aa10.4□□□□□ -0.74
CLK3-207ENST00000562389 M0QXV9 152 aa10.39□□□□□ -0.75
CLK3-207ENST00000562389 SRRM2Q9UQ35 2752 aaKnown RBP10.38□□□□□ -0.75
CLK3-207ENST00000562389 PFN2P35080 140 aa10.38□□□□□ -0.75
CLK3-207ENST00000562389 HNRNPA3P51991 378 aaKnown RBP10.38□□□□□ -0.75
CLK3-207ENST00000562389 HERVK_113P61574 105 aa10.38□□□□□ -0.75
CLK3-207ENST00000562389 LINC01545Q5VT33 79 aa10.38□□□□□ -0.75
CLK3-207ENST00000562389 PET117Q6UWS5 81 aa10.38□□□□□ -0.75
CLK3-207ENST00000562389 LEPROTO15243 131 aa10.37□□□□□ -0.75
CLK3-207ENST00000562389 SERTAD4-AS1Q5TG53 156 aa10.37□□□□□ -0.75
CLK3-207ENST00000562389 C3orf79P0CE67 100 aa10.36□□□□□ -0.75
CLK3-207ENST00000562389 HERV-K104P63124 156 aa10.36□□□□□ -0.75
CLK3-207ENST00000562389 PLEKHB2Q96CS7 222 aa10.36□□□□□ -0.75
CLK3-207ENST00000562389 PLA2G2DQ9UNK4 145 aa10.36□□□□□ -0.75
CLK3-207ENST00000562389 FLG2Q5D862 2391 aaPredicted RBP10.35□□□□□ -0.75
CLK3-207ENST00000562389 TSPEAR-AS2P59090 65 aa10.35□□□□□ -0.75
CLK3-207ENST00000562389 NDUFA12Q9UI09 145 aa10.35□□□□□ -0.75
CLK3-207ENST00000562389 PKHD1L1Q86WI1 4243 aa10.34□□□□□ -0.75
CLK3-207ENST00000562389 TP73-AS1Q9UF72 201 aa10.34□□□□□ -0.75
CLK3-207ENST00000562389 PSORS1C2Q9UIG4 136 aa10.34□□□□□ -0.75
CLK3-207ENST00000562389 C22orf24Q9Y442 160 aa10.34□□□□□ -0.75
CLK3-207ENST00000562389 MYMXA0A1B0GTQ4 84 aa10.33□□□□□ -0.76
CLK3-207ENST00000562389 J3QQQ9 107 aa10.33□□□□□ -0.76
CLK3-207ENST00000562389 KRTDAPP60985 99 aa10.33□□□□□ -0.76
CLK3-207ENST00000562389 SND1-IT1Q9HBX3 110 aa10.33□□□□□ -0.76
CLK3-207ENST00000562389 IGLV5-37A0A075B6J1 123 aa10.32□□□□□ -0.76
CLK3-207ENST00000562389 E9PLD3 99 aa10.32□□□□□ -0.76
CLK3-207ENST00000562389 NMUP48645 174 aa10.32□□□□□ -0.76
CLK3-207ENST00000562389 UBE2BP63146 152 aa10.32□□□□□ -0.76
CLK3-207ENST00000562389 KRTAP11-1Q8IUC1 163 aa10.32□□□□□ -0.76
CLK3-207ENST00000562389 LINC00587B1AMM8 73 aa10.31□□□□□ -0.76
CLK3-207ENST00000562389 LGALS3P17931 250 aaKnown RBP10.31□□□□□ -0.76
CLK3-207ENST00000562389 LINC00158P58513 81 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms