RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 C9orf163Q8N9P6 203 aa6.02□□□□□ -1.45
LDLR-210ENST00000559340 PMCHL2Q9BQD1 86 aa6.02□□□□□ -1.45
LDLR-210ENST00000559340 TRBV30A0A0K0K1B3 111 aa6.01□□□□□ -1.45
LDLR-210ENST00000559340 C16orf90A8MZG2 172 aa6.01□□□□□ -1.45
LDLR-210ENST00000559340 HSBP1L1C9JCN9 74 aa6.01□□□□□ -1.45
LDLR-210ENST00000559340 LEPROTO15243 131 aa6.01□□□□□ -1.45
LDLR-210ENST00000559340 SCGB1D1O95968 90 aa6.01□□□□□ -1.45
LDLR-210ENST00000559340 KRTAP10-2P60368 255 aa6.01□□□□□ -1.45
LDLR-210ENST00000559340 LINC00526Q96FQ7 95 aa6□□□□□ -1.45
LDLR-210ENST00000559340 LOC107984640A0A0U1RRK4 108 aa5.99□□□□□ -1.45
LDLR-210ENST00000559340 LINC00587B1AMM8 73 aa5.99□□□□□ -1.45
LDLR-210ENST00000559340 SLPIP03973 132 aa5.99□□□□□ -1.45
LDLR-210ENST00000559340 LGALS3P17931 250 aaKnown RBP5.99□□□□□ -1.45
LDLR-210ENST00000559340 UNQ6190/PRO20217Q6UXQ8 127 aa5.99□□□□□ -1.45
LDLR-210ENST00000559340 Q6ZRU5 148 aa5.99□□□□□ -1.45
LDLR-210ENST00000559340 MYMXA0A1B0GTQ4 84 aa5.98□□□□□ -1.45
LDLR-210ENST00000559340 E9PLD3 99 aa5.98□□□□□ -1.45
LDLR-210ENST00000559340 NMUP48645 174 aa5.98□□□□□ -1.45
LDLR-210ENST00000559340 HERV-K104P63124 156 aa5.98□□□□□ -1.45
LDLR-210ENST00000559340 LINC00474Q9P2X8 69 aa5.98□□□□□ -1.45
LDLR-210ENST00000559340 J3QQQ9 107 aa5.97□□□□□ -1.45
LDLR-210ENST00000559340 TLX1NBP0CAT3 122 aa5.97□□□□□ -1.45
LDLR-210ENST00000559340 C2orf82Q6UX34 121 aa5.97□□□□□ -1.45
LDLR-210ENST00000559340 DPH3Q96FX2 82 aa5.97□□□□□ -1.45
LDLR-210ENST00000559340 NDUFA12Q9UI09 145 aa5.97□□□□□ -1.45
LDLR-210ENST00000559340 KIAA1109Q2LD37 5005 aa5.97□□□□□ -1.45
LDLR-210ENST00000559340 PCLOQ9Y6V0 5065 aa5.97□□□□□ -1.45
LDLR-210ENST00000559340 FAT2Q9NYQ8 4349 aa5.96□□□□□ -1.45
LDLR-210ENST00000559340 COX17Q14061 63 aa5.96□□□□□ -1.46
LDLR-210ENST00000559340 JOSD1Q15040 202 aaPredicted RBP5.96□□□□□ -1.46
LDLR-210ENST00000559340 SDIM1Q6ZPB5 146 aa5.96□□□□□ -1.46
LDLR-210ENST00000559340 STPG4Q8N801 248 aa5.96□□□□□ -1.46
LDLR-210ENST00000559340 C6orf48Q9UBA6 75 aa5.96□□□□□ -1.46
LDLR-210ENST00000559340 HECTD4Q9Y4D8 3996 aa5.96□□□□□ -1.46
LDLR-210ENST00000559340 NDUFC2-KCTD14E9PQ53 114 aa5.95□□□□□ -1.46
LDLR-210ENST00000559340 FUSP35637 526 aaKnown RBP eCLIP5.95□□□□□ -1.46
LDLR-210ENST00000559340 CIRBPQ14011 172 aaKnown RBP5.95□□□□□ -1.46
LDLR-210ENST00000559340 C10orf25Q5T742 122 aa5.95□□□□□ -1.46
LDLR-210ENST00000559340 ATOH7Q8N100 152 aa5.95□□□□□ -1.46
LDLR-210ENST00000559340 KRTAP10-1P60331 282 aa5.94□□□□□ -1.46
LDLR-210ENST00000559340 RPL18AQ02543 176 aaKnown RBP5.94□□□□□ -1.46
LDLR-210ENST00000559340 GAGE2BQ13066 116 aa5.94□□□□□ -1.46
LDLR-210ENST00000559340 MEIG1Q5JSS6 88 aa5.94□□□□□ -1.46
LDLR-210ENST00000559340 ZNF625Q96I27 306 aaPredicted RBP5.94□□□□□ -1.46
LDLR-210ENST00000559340 ERG28Q9UKR5 140 aa5.94□□□□□ -1.46
LDLR-210ENST00000559340 PKD1P98161 4303 aa5.93□□□□□ -1.46
LDLR-210ENST00000559340 DNAH11Q96DT5 4516 aa5.93□□□□□ -1.46
LDLR-210ENST00000559340 PTTG1IPP53801 180 aa5.93□□□□□ -1.46
LDLR-210ENST00000559340 LINC00158P58513 81 aa5.93□□□□□ -1.46
LDLR-210ENST00000559340 LINC01620Q4KN68 170 aa5.93□□□□□ -1.46
LDLR-210ENST00000559340 IGKV2-24A0A0C4DH68 120 aa5.92□□□□□ -1.46
LDLR-210ENST00000559340 ZNF815PA8K554 130 aa5.92□□□□□ -1.46
LDLR-210ENST00000559340 PFN2P35080 140 aa5.92□□□□□ -1.46
LDLR-210ENST00000559340 MAJINQ3KP22 176 aa5.92□□□□□ -1.46
LDLR-210ENST00000559340 GAGE2EQ4V326 116 aa5.92□□□□□ -1.46
LDLR-210ENST00000559340 C9orf116Q5BN46 136 aaPredicted RBP5.92□□□□□ -1.46
LDLR-210ENST00000559340 VAMP8Q9BV40 100 aa5.92□□□□□ -1.46
LDLR-210ENST00000559340 GAGE2DQ9UEU5 116 aa5.92□□□□□ -1.46
LDLR-210ENST00000559340 TSPEAR-AS2P59090 65 aa5.91□□□□□ -1.46
LDLR-210ENST00000559340 ANKRD39Q53RE8 183 aa5.91□□□□□ -1.46
LDLR-210ENST00000559340 A0A096LNI7 61 aa5.9□□□□□ -1.46
LDLR-210ENST00000559340 IGKV2D-26A0A0A0MRZ7 120 aa5.9□□□□□ -1.46
LDLR-210ENST00000559340 TIMM17BO60830 172 aa5.9□□□□□ -1.46
LDLR-210ENST00000559340 CDK2AP2O75956 126 aa5.9□□□□□ -1.46
LDLR-210ENST00000559340 S100A12P80511 92 aa5.9□□□□□ -1.46
LDLR-210ENST00000559340 SCGB1D4Q6XE38 83 aa5.9□□□□□ -1.46
LDLR-210ENST00000559340 Q6ZRP5 223 aa5.9□□□□□ -1.46
LDLR-210ENST00000559340 Q6ZSA8 131 aa5.9□□□□□ -1.46
LDLR-210ENST00000559340 SPACA4Q8TDM5 124 aa5.9□□□□□ -1.46
LDLR-210ENST00000559340 A0A0J9YXY3 114 aa5.89□□□□□ -1.47
LDLR-210ENST00000559340 SMIM13P0DJ93 91 aa5.89□□□□□ -1.47
LDLR-210ENST00000559340 SPATA45Q537H7 98 aa5.89□□□□□ -1.47
LDLR-210ENST00000559340 PYY3Q5JQD4 70 aa5.89□□□□□ -1.47
LDLR-210ENST00000559340 COPS9Q8WXC6 57 aa5.89□□□□□ -1.47
LDLR-210ENST00000559340 DNAH5Q8TE73 4624 aa5.89□□□□□ -1.47
LDLR-210ENST00000559340 TMEM238C9JI98 176 aa5.88□□□□□ -1.47
LDLR-210ENST00000559340 CHTF8P0CG12 524 aa5.88□□□□□ -1.47
LDLR-210ENST00000559340 RPL24P83731 157 aaKnown RBP5.88□□□□□ -1.47
LDLR-210ENST00000559340 MIEN1Q9BRT3 115 aa5.88□□□□□ -1.47
LDLR-210ENST00000559340 FAM30AQ9NZY2 134 aa5.88□□□□□ -1.47
LDLR-210ENST00000559340 PLA2G2DQ9UNK4 145 aa5.88□□□□□ -1.47
LDLR-210ENST00000559340 PAM16Q9Y3D7 125 aa5.88□□□□□ -1.47
LDLR-210ENST00000559340 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.88□□□□□ -1.47
LDLR-210ENST00000559340 DYNC1H1Q14204 4646 aaKnown RBP5.87□□□□□ -1.47
LDLR-210ENST00000559340 A0A087WYN8 130 aa5.87□□□□□ -1.47
LDLR-210ENST00000559340 A0A0U1RRA0 63 aa5.87□□□□□ -1.47
LDLR-210ENST00000559340 COX8AP10176 69 aa5.87□□□□□ -1.47
LDLR-210ENST00000559340 Q6ZVH6 145 aa5.87□□□□□ -1.47
LDLR-210ENST00000559340 MIR7-3HGQ8N6C7 128 aa5.87□□□□□ -1.47
LDLR-210ENST00000559340 SND1-IT1Q9HBX3 110 aa5.87□□□□□ -1.47
LDLR-210ENST00000559340 XAGE1AQ9HD64 81 aa5.87□□□□□ -1.47
LDLR-210ENST00000559340 PLAC8Q9NZF1 115 aa5.87□□□□□ -1.47
LDLR-210ENST00000559340 DLEU1O43261 78 aa5.86□□□□□ -1.47
LDLR-210ENST00000559340 LBHQ53QV2 105 aaPredicted RBP5.86□□□□□ -1.47
LDLR-210ENST00000559340 PCP2Q8IVA1 136 aa5.86□□□□□ -1.47
LDLR-210ENST00000559340 CIRBP-AS1Q8TBR5 109 aa5.86□□□□□ -1.47
LDLR-210ENST00000559340 PKHD1P08F94 4074 aa5.85□□□□□ -1.47
LDLR-210ENST00000559340 RYR1P21817 5038 aa5.85□□□□□ -1.47
LDLR-210ENST00000559340 SMIM6P0DI80 62 aa5.85□□□□□ -1.47
LDLR-210ENST00000559340 XGP55808 180 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 133.1 ms