RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 H3BRM9 83 aa8.65□□□□□ -1.02
SHMT2-228ENST00000557302 MAJINQ3KP22 176 aa8.65□□□□□ -1.02
SHMT2-228ENST00000557302 C10orf25Q5T742 122 aa8.65□□□□□ -1.02
SHMT2-228ENST00000557302 UNQ6190/PRO20217Q6UXQ8 127 aa8.65□□□□□ -1.02
SHMT2-228ENST00000557302 Q8IZM0 81 aa8.65□□□□□ -1.02
SHMT2-228ENST00000557302 IFI27L1Q96BM0 104 aa8.65□□□□□ -1.02
SHMT2-228ENST00000557302 LINC00474Q9P2X8 69 aa8.65□□□□□ -1.02
SHMT2-228ENST00000557302 A0A087WYN8 130 aa8.64□□□□□ -1.03
SHMT2-228ENST00000557302 SMIM1B2RUZ4 78 aa8.64□□□□□ -1.03
SHMT2-228ENST00000557302 CKS1BP61024 79 aa8.64□□□□□ -1.03
SHMT2-228ENST00000557302 C6orf226Q5I0X4 101 aa8.64□□□□□ -1.03
SHMT2-228ENST00000557302 C2orf82Q6UX34 121 aa8.64□□□□□ -1.03
SHMT2-228ENST00000557302 C6orf48Q9UBA6 75 aa8.64□□□□□ -1.03
SHMT2-228ENST00000557302 HIST1H2BKO60814 126 aa8.63□□□□□ -1.03
SHMT2-228ENST00000557302 LEPROTL1O95214 131 aa8.63□□□□□ -1.03
SHMT2-228ENST00000557302 HIST1H2BJP06899 126 aa8.63□□□□□ -1.03
SHMT2-228ENST00000557302 SPINK8P0C7L1 97 aa8.63□□□□□ -1.03
SHMT2-228ENST00000557302 HIST1H2BOP23527 126 aa8.63□□□□□ -1.03
SHMT2-228ENST00000557302 HIST1H2BBP33778 126 aa8.63□□□□□ -1.03
SHMT2-228ENST00000557302 PTTG1IPP53801 180 aa8.63□□□□□ -1.03
SHMT2-228ENST00000557302 HIST1H2BDP58876 126 aa8.63□□□□□ -1.03
SHMT2-228ENST00000557302 HIST1H2BCP62807 126 aa8.63□□□□□ -1.03
SHMT2-228ENST00000557302 RPL18AQ02543 176 aaKnown RBP8.63□□□□□ -1.03
SHMT2-228ENST00000557302 GAGE2BQ13066 116 aa8.63□□□□□ -1.03
SHMT2-228ENST00000557302 HIST2H2BEQ16778 126 aa8.63□□□□□ -1.03
SHMT2-228ENST00000557302 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.63□□□□□ -1.03
SHMT2-228ENST00000557302 HIST1H2BHQ93079 126 aa8.63□□□□□ -1.03
SHMT2-228ENST00000557302 HIST1H2BNQ99877 126 aa8.63□□□□□ -1.03
SHMT2-228ENST00000557302 HIST1H2BMQ99879 126 aa8.63□□□□□ -1.03
SHMT2-228ENST00000557302 CHTOPQ9Y3Y2 248 aaKnown RBP8.63□□□□□ -1.03
SHMT2-228ENST00000557302 TRAV12-1A0A0B4J245 112 aa8.62□□□□□ -1.03
SHMT2-228ENST00000557302 TRBV30A0A0K0K1B3 111 aa8.62□□□□□ -1.03
SHMT2-228ENST00000557302 NUPR1O60356 82 aa8.62□□□□□ -1.03
SHMT2-228ENST00000557302 ZNF22P17026 224 aaPredicted RBP8.62□□□□□ -1.03
SHMT2-228ENST00000557302 PLAC8Q9NZF1 115 aa8.62□□□□□ -1.03
SHMT2-228ENST00000557302 C11orf86A6NJI1 115 aa8.61□□□□□ -1.03
SHMT2-228ENST00000557302 CXCL5P42830 114 aa8.61□□□□□ -1.03
SHMT2-228ENST00000557302 STPG4Q8N801 248 aa8.61□□□□□ -1.03
SHMT2-228ENST00000557302 COX7B2Q8TF08 81 aa8.61□□□□□ -1.03
SHMT2-228ENST00000557302 PLA2G1BP04054 148 aaKnown RBP8.6□□□□□ -1.03
SHMT2-228ENST00000557302 TLX1NBP0CAT3 122 aa8.6□□□□□ -1.03
SHMT2-228ENST00000557302 HSPB8Q9UJY1 196 aa8.6□□□□□ -1.03
SHMT2-228ENST00000557302 SRRM2Q9UQ35 2752 aaKnown RBP8.59□□□□□ -1.03
SHMT2-228ENST00000557302 HERC1Q15751 4861 aa8.59□□□□□ -1.03
SHMT2-228ENST00000557302 F8VRH5 84 aa8.59□□□□□ -1.03
SHMT2-228ENST00000557302 FABP4P15090 132 aa8.59□□□□□ -1.03
SHMT2-228ENST00000557302 TMEM170BQ5T4T1 132 aa8.59□□□□□ -1.03
SHMT2-228ENST00000557302 VPS13BQ7Z7G8 4022 aa8.58□□□□□ -1.04
SHMT2-228ENST00000557302 IGLV5-39A0A0G2JS06 123 aa8.58□□□□□ -1.04
SHMT2-228ENST00000557302 H0Y8G0 127 aa8.58□□□□□ -1.04
SHMT2-228ENST00000557302 C9orf116Q5BN46 136 aaPredicted RBP8.58□□□□□ -1.04
SHMT2-228ENST00000557302 NDUFC2-KCTD14E9PQ53 114 aa8.57□□□□□ -1.04
SHMT2-228ENST00000557302 GAGE2EQ4V326 116 aa8.57□□□□□ -1.04
SHMT2-228ENST00000557302 Q6ZRP5 223 aa8.57□□□□□ -1.04
SHMT2-228ENST00000557302 GAGE2DQ9UEU5 116 aa8.57□□□□□ -1.04
SHMT2-228ENST00000557302 TMA7Q9Y2S6 64 aaKnown RBP8.57□□□□□ -1.04
SHMT2-228ENST00000557302 RPL37AP61513 92 aaKnown RBP8.56□□□□□ -1.04
SHMT2-228ENST00000557302 ODF1Q14990 250 aa8.56□□□□□ -1.04
SHMT2-228ENST00000557302 C7orf33Q8WU49 177 aa8.56□□□□□ -1.04
SHMT2-228ENST00000557302 INAFM2P0DMQ5 153 aa8.55□□□□□ -1.04
SHMT2-228ENST00000557302 COA6Q5JTJ3 125 aaKnown RBP8.55□□□□□ -1.04
SHMT2-228ENST00000557302 A0A1W2PNN7 141 aa8.54□□□□□ -1.04
SHMT2-228ENST00000557302 S100A6P06703 90 aa8.54□□□□□ -1.04
SHMT2-228ENST00000557302 MAP1LC3CQ9BXW4 147 aa8.54□□□□□ -1.04
SHMT2-228ENST00000557302 TMEM223A0PJW6 202 aa8.53□□□□□ -1.04
SHMT2-228ENST00000557302 PLNP26678 52 aa8.53□□□□□ -1.04
SHMT2-228ENST00000557302 C5orf52A6NGY3 159 aa8.52□□□□□ -1.05
SHMT2-228ENST00000557302 KRTAP10-4P60372 401 aaPredicted RBP8.52□□□□□ -1.05
SHMT2-228ENST00000557302 DPM2O94777 84 aa8.51□□□□□ -1.05
SHMT2-228ENST00000557302 SFTA2Q6UW10 78 aa8.51□□□□□ -1.05
SHMT2-228ENST00000557302 MYCBP2O75592 4640 aa8.5□□□□□ -1.05
SHMT2-228ENST00000557302 FAM168BA1KXE4 195 aa8.5□□□□□ -1.05
SHMT2-228ENST00000557302 C9orf129Q5T035 196 aaKnown RBP8.5□□□□□ -1.05
SHMT2-228ENST00000557302 FAM19A5Q7Z5A7 132 aaPredicted RBP8.5□□□□□ -1.05
SHMT2-228ENST00000557302 PMCHL2Q9BQD1 86 aa8.5□□□□□ -1.05
SHMT2-228ENST00000557302 XAGE1AQ9HD64 81 aa8.5□□□□□ -1.05
SHMT2-228ENST00000557302 SYS1-DBNDD2H3BUS1 97 aa8.49□□□□□ -1.05
SHMT2-228ENST00000557302 IGKCP01834 107 aa8.49□□□□□ -1.05
SHMT2-228ENST00000557302 FLG2Q5D862 2391 aaPredicted RBP8.49□□□□□ -1.05
SHMT2-228ENST00000557302 LOC105371267A0A1B0GV96 52 aa8.48□□□□□ -1.05
SHMT2-228ENST00000557302 PHF5AQ7RTV0 110 aaKnown RBP8.48□□□□□ -1.05
SHMT2-228ENST00000557302 ZNF625Q96I27 306 aaPredicted RBP8.48□□□□□ -1.05
SHMT2-228ENST00000557302 PFN2P35080 140 aa8.47□□□□□ -1.05
SHMT2-228ENST00000557302 HERVK_113P61574 105 aa8.47□□□□□ -1.05
SHMT2-228ENST00000557302 SNRPEP62304 92 aaKnown RBP8.47□□□□□ -1.05
SHMT2-228ENST00000557302 ERG28Q9UKR5 140 aa8.47□□□□□ -1.05
SHMT2-228ENST00000557302 M0QXV9 152 aa8.46□□□□□ -1.06
SHMT2-228ENST00000557302 PRR3P79522 188 aaKnown RBP8.46□□□□□ -1.06
SHMT2-228ENST00000557302 PET117Q6UWS5 81 aa8.46□□□□□ -1.06
SHMT2-228ENST00000557302 KRTAP7-1Q8IUC3 87 aa8.46□□□□□ -1.06
SHMT2-228ENST00000557302 LEPROTO15243 131 aa8.45□□□□□ -1.06
SHMT2-228ENST00000557302 COX17Q14061 63 aa8.45□□□□□ -1.06
SHMT2-228ENST00000557302 LINC01545Q5VT33 79 aa8.45□□□□□ -1.06
SHMT2-228ENST00000557302 PLEKHB2Q96CS7 222 aa8.45□□□□□ -1.06
SHMT2-228ENST00000557302 NDUFA12Q9UI09 145 aa8.45□□□□□ -1.06
SHMT2-228ENST00000557302 C3orf79P0CE67 100 aa8.44□□□□□ -1.06
SHMT2-228ENST00000557302 KRTDAPP60985 99 aa8.44□□□□□ -1.06
SHMT2-228ENST00000557302 SERTAD4-AS1Q5TG53 156 aa8.44□□□□□ -1.06
SHMT2-228ENST00000557302 HIST3H2BBQ8N257 126 aa8.44□□□□□ -1.06
SHMT2-228ENST00000557302 DMBT1Q9UGM3 2413 aaPredicted RBP8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms