RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 RPL18AQ02543 176 aaKnown RBP6.74□□□□□ -1.33
LINC00239-201ENST00000556973 C2orf82Q6UX34 121 aa6.74□□□□□ -1.33
LINC00239-201ENST00000556973 SMIM1B2RUZ4 78 aa6.73□□□□□ -1.33
LINC00239-201ENST00000556973 H3BRM9 83 aa6.73□□□□□ -1.33
LINC00239-201ENST00000556973 Q6ZRP5 223 aa6.73□□□□□ -1.33
LINC00239-201ENST00000556973 C7orf33Q8WU49 177 aa6.73□□□□□ -1.33
LINC00239-201ENST00000556973 IFI27L1Q96BM0 104 aa6.73□□□□□ -1.33
LINC00239-201ENST00000556973 FAT1Q14517 4588 aa6.73□□□□□ -1.33
LINC00239-201ENST00000556973 ABCA13Q86UQ4 5058 aa6.73□□□□□ -1.33
LINC00239-201ENST00000556973 SCO1O75880 301 aa6.72□□□□□ -1.33
LINC00239-201ENST00000556973 CXCL5P42830 114 aa6.72□□□□□ -1.33
LINC00239-201ENST00000556973 TRAV12-1A0A0B4J245 112 aa6.71□□□□□ -1.34
LINC00239-201ENST00000556973 NDUFC2-KCTD14E9PQ53 114 aa6.71□□□□□ -1.34
LINC00239-201ENST00000556973 F8VRH5 84 aa6.71□□□□□ -1.34
LINC00239-201ENST00000556973 SPINK8P0C7L1 97 aa6.71□□□□□ -1.34
LINC00239-201ENST00000556973 C9orf116Q5BN46 136 aaPredicted RBP6.71□□□□□ -1.34
LINC00239-201ENST00000556973 FAM19A2Q8N3H0 131 aa6.71□□□□□ -1.34
LINC00239-201ENST00000556973 COX7B2Q8TF08 81 aa6.71□□□□□ -1.34
LINC00239-201ENST00000556973 CHTOPQ9Y3Y2 248 aaKnown RBP6.71□□□□□ -1.34
LINC00239-201ENST00000556973 A0A1W2PNN7 141 aa6.7□□□□□ -1.34
LINC00239-201ENST00000556973 SERF1AO75920 110 aa6.7□□□□□ -1.34
LINC00239-201ENST00000556973 ZNF22P17026 224 aaPredicted RBP6.7□□□□□ -1.34
LINC00239-201ENST00000556973 VPS13BQ7Z7G8 4022 aa6.7□□□□□ -1.34
LINC00239-201ENST00000556973 LEPROTL1O95214 131 aa6.69□□□□□ -1.34
LINC00239-201ENST00000556973 LINC00310P59036 64 aa6.69□□□□□ -1.34
LINC00239-201ENST00000556973 GAGE2EQ4V326 116 aa6.69□□□□□ -1.34
LINC00239-201ENST00000556973 GAGE2DQ9UEU5 116 aa6.69□□□□□ -1.34
LINC00239-201ENST00000556973 IGLV5-39A0A0G2JS06 123 aa6.68□□□□□ -1.34
LINC00239-201ENST00000556973 C11orf86A6NJI1 115 aa6.68□□□□□ -1.34
LINC00239-201ENST00000556973 NUPR1O60356 82 aa6.68□□□□□ -1.34
LINC00239-201ENST00000556973 TMEM170BQ5T4T1 132 aa6.68□□□□□ -1.34
LINC00239-201ENST00000556973 SRRM2Q9UQ35 2752 aaKnown RBP6.68□□□□□ -1.34
LINC00239-201ENST00000556973 HSPB8Q9UJY1 196 aa6.67□□□□□ -1.34
LINC00239-201ENST00000556973 HIST1H2BKO60814 126 aa6.66□□□□□ -1.34
LINC00239-201ENST00000556973 HIST1H2BJP06899 126 aa6.66□□□□□ -1.34
LINC00239-201ENST00000556973 HIST1H2BOP23527 126 aa6.66□□□□□ -1.34
LINC00239-201ENST00000556973 HIST1H2BBP33778 126 aa6.66□□□□□ -1.34
LINC00239-201ENST00000556973 HIST1H2BDP58876 126 aa6.66□□□□□ -1.34
LINC00239-201ENST00000556973 HIST1H2BCP62807 126 aa6.66□□□□□ -1.34
LINC00239-201ENST00000556973 HIST2H2BEQ16778 126 aa6.66□□□□□ -1.34
LINC00239-201ENST00000556973 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.66□□□□□ -1.34
LINC00239-201ENST00000556973 HIST1H2BHQ93079 126 aa6.66□□□□□ -1.34
LINC00239-201ENST00000556973 HIST1H2BNQ99877 126 aa6.66□□□□□ -1.34
LINC00239-201ENST00000556973 HIST1H2BMQ99879 126 aa6.66□□□□□ -1.34
LINC00239-201ENST00000556973 TMEM223A0PJW6 202 aa6.65□□□□□ -1.34
LINC00239-201ENST00000556973 FAM168BA1KXE4 195 aa6.65□□□□□ -1.34
LINC00239-201ENST00000556973 FABP4P15090 132 aa6.65□□□□□ -1.34
LINC00239-201ENST00000556973 S100A1P23297 94 aa6.65□□□□□ -1.34
LINC00239-201ENST00000556973 PRR3P79522 188 aaKnown RBP6.65□□□□□ -1.34
LINC00239-201ENST00000556973 C9orf129Q5T035 196 aaKnown RBP6.65□□□□□ -1.34
LINC00239-201ENST00000556973 SFTA2Q6UW10 78 aa6.65□□□□□ -1.34
LINC00239-201ENST00000556973 H0Y8G0 127 aa6.64□□□□□ -1.35
LINC00239-201ENST00000556973 HNRNPA3P51991 378 aaKnown RBP6.64□□□□□ -1.35
LINC00239-201ENST00000556973 ODF1Q14990 250 aa6.64□□□□□ -1.35
LINC00239-201ENST00000556973 PHF5AQ7RTV0 110 aaKnown RBP6.64□□□□□ -1.35
LINC00239-201ENST00000556973 FAM19A5Q7Z5A7 132 aaPredicted RBP6.64□□□□□ -1.35
LINC00239-201ENST00000556973 KRTAP29-1A8MX34 341 aaPredicted RBP6.63□□□□□ -1.35
LINC00239-201ENST00000556973 KRTAP7-1Q8IUC3 87 aa6.63□□□□□ -1.35
LINC00239-201ENST00000556973 XAGE1AQ9HD64 81 aa6.63□□□□□ -1.35
LINC00239-201ENST00000556973 OXTP01178 125 aa6.62□□□□□ -1.35
LINC00239-201ENST00000556973 PLNP26678 52 aa6.62□□□□□ -1.35
LINC00239-201ENST00000556973 COX17Q14061 63 aa6.62□□□□□ -1.35
LINC00239-201ENST00000556973 MAP1LC3CQ9BXW4 147 aa6.62□□□□□ -1.35
LINC00239-201ENST00000556973 J3QL48 77 aa6.61□□□□□ -1.35
LINC00239-201ENST00000556973 M0QXV9 152 aa6.61□□□□□ -1.35
LINC00239-201ENST00000556973 SPINK6Q6UWN8 80 aa6.61□□□□□ -1.35
LINC00239-201ENST00000556973 PSORS1C2Q9UIG4 136 aa6.61□□□□□ -1.35
LINC00239-201ENST00000556973 ERG28Q9UKR5 140 aa6.61□□□□□ -1.35
LINC00239-201ENST00000556973 PLA2G2DQ9UNK4 145 aa6.61□□□□□ -1.35
LINC00239-201ENST00000556973 PFN2P35080 140 aa6.6□□□□□ -1.35
LINC00239-201ENST00000556973 SRSF9Q13242 221 aaKnown RBP eCLIP6.6□□□□□ -1.35
LINC00239-201ENST00000556973 LBHQ53QV2 105 aaPredicted RBP6.6□□□□□ -1.35
LINC00239-201ENST00000556973 COA6Q5JTJ3 125 aaKnown RBP6.6□□□□□ -1.35
LINC00239-201ENST00000556973 SERTAD4-AS1Q5TG53 156 aa6.6□□□□□ -1.35
LINC00239-201ENST00000556973 ZNF625Q96I27 306 aaPredicted RBP6.6□□□□□ -1.35
LINC00239-201ENST00000556973 C22orf24Q9Y442 160 aa6.6□□□□□ -1.35
LINC00239-201ENST00000556973 DPM2O94777 84 aa6.59□□□□□ -1.35
LINC00239-201ENST00000556973 IGKCP01834 107 aa6.59□□□□□ -1.35
LINC00239-201ENST00000556973 UBE2BP63146 152 aa6.59□□□□□ -1.35
LINC00239-201ENST00000556973 C1orf137Q5JT78 98 aa6.59□□□□□ -1.35
LINC00239-201ENST00000556973 TP73-AS1Q9UF72 201 aa6.59□□□□□ -1.35
LINC00239-201ENST00000556973 ATP6V1G1O75348 118 aa6.58□□□□□ -1.36
LINC00239-201ENST00000556973 HERV-K104P63124 156 aa6.58□□□□□ -1.36
LINC00239-201ENST00000556973 KRTAP11-1Q8IUC1 163 aa6.58□□□□□ -1.36
LINC00239-201ENST00000556973 PMCHL2Q9BQD1 86 aa6.58□□□□□ -1.36
LINC00239-201ENST00000556973 LINC00587B1AMM8 73 aa6.57□□□□□ -1.36
LINC00239-201ENST00000556973 SYS1-DBNDD2H3BUS1 97 aa6.57□□□□□ -1.36
LINC00239-201ENST00000556973 LEPROTO15243 131 aa6.57□□□□□ -1.36
LINC00239-201ENST00000556973 MRPL55Q7Z7F7 128 aaKnown RBP6.57□□□□□ -1.36
LINC00239-201ENST00000556973 SND1-IT1Q9HBX3 110 aa6.57□□□□□ -1.36
LINC00239-201ENST00000556973 IGLV5-37A0A075B6J1 123 aa6.56□□□□□ -1.36
LINC00239-201ENST00000556973 MYMXA0A1B0GTQ4 84 aa6.56□□□□□ -1.36
LINC00239-201ENST00000556973 IGLV7-43P04211 117 aa6.56□□□□□ -1.36
LINC00239-201ENST00000556973 LINC00158P58513 81 aa6.56□□□□□ -1.36
LINC00239-201ENST00000556973 HERVK_113P61574 105 aa6.56□□□□□ -1.36
LINC00239-201ENST00000556973 PLEKHB2Q96CS7 222 aa6.56□□□□□ -1.36
LINC00239-201ENST00000556973 NDUFA12Q9UI09 145 aa6.56□□□□□ -1.36
LINC00239-201ENST00000556973 PKHD1L1Q86WI1 4243 aa6.56□□□□□ -1.36
LINC00239-201ENST00000556973 RPL24P83731 157 aaKnown RBP6.55□□□□□ -1.36
LINC00239-201ENST00000556973 REG3GQ6UW15 175 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms