RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 IGHV7-4-1A0A0J9YVY3 117 aa6.2□□□□□ -1.42
VPS13D-212ENST00000543766 FAM229AH3BQW9 127 aa6.2□□□□□ -1.42
VPS13D-212ENST00000543766 RPL27AP46776 148 aaKnown RBP6.19□□□□□ -1.42
VPS13D-212ENST00000543766 SMIM2Q9BVW6 85 aa6.19□□□□□ -1.42
VPS13D-212ENST00000543766 ZNRD1Q9P1U0 126 aa6.19□□□□□ -1.42
VPS13D-212ENST00000543766 UTP20O75691 2785 aaKnown RBP6.19□□□□□ -1.42
VPS13D-212ENST00000543766 CREBBPQ92793 2442 aa6.19□□□□□ -1.42
VPS13D-212ENST00000543766 A0A0J9YXY3 114 aa6.19□□□□□ -1.42
VPS13D-212ENST00000543766 TSHBP01222 138 aa6.19□□□□□ -1.42
VPS13D-212ENST00000543766 IGKV1-17P01599 117 aa6.19□□□□□ -1.42
VPS13D-212ENST00000543766 IGHV3-30-3P0DP02 117 aa6.19□□□□□ -1.42
VPS13D-212ENST00000543766 FBXL19-AS1Q494R0 122 aa6.19□□□□□ -1.42
VPS13D-212ENST00000543766 AKAP6Q13023 2319 aa6.19□□□□□ -1.42
VPS13D-212ENST00000543766 I3L2K1 104 aa6.19□□□□□ -1.42
VPS13D-212ENST00000543766 B9D2Q9BPU9 175 aa6.19□□□□□ -1.42
VPS13D-212ENST00000543766 CYP4F30PQ9H0H9 118 aa6.19□□□□□ -1.42
VPS13D-212ENST00000543766 MIR7-3HGQ8N6C7 128 aa6.18□□□□□ -1.42
VPS13D-212ENST00000543766 BCE1O60756 84 aa6.18□□□□□ -1.42
VPS13D-212ENST00000543766 LECT2O14960 151 aa6.18□□□□□ -1.42
VPS13D-212ENST00000543766 C9orf129Q5T035 196 aaKnown RBP6.18□□□□□ -1.42
VPS13D-212ENST00000543766 A0A0J9YX75 114 aa6.17□□□□□ -1.42
VPS13D-212ENST00000543766 COX7A1P24310 79 aa6.17□□□□□ -1.42
VPS13D-212ENST00000543766 LYZP61626 148 aa6.17□□□□□ -1.42
VPS13D-212ENST00000543766 TRBV7-4A0A0J9YYF1 115 aa6.16□□□□□ -1.42
VPS13D-212ENST00000543766 IGKV3-15P01624 115 aa6.16□□□□□ -1.42
VPS13D-212ENST00000543766 LUZP6Q538Z0 58 aa6.16□□□□□ -1.42
VPS13D-212ENST00000543766 Q6ZTI0 123 aa6.16□□□□□ -1.42
VPS13D-212ENST00000543766 DCHS2Q6V1P9 2916 aa6.16□□□□□ -1.42
VPS13D-212ENST00000543766 IGKV2-40A0A087WW87 121 aaPredicted RBP6.16□□□□□ -1.42
VPS13D-212ENST00000543766 IGIPA6NJ69 53 aa6.16□□□□□ -1.42
VPS13D-212ENST00000543766 IGKV2D-40P01614 121 aaPredicted RBP6.16□□□□□ -1.42
VPS13D-212ENST00000543766 SPAG11BQ08648 103 aa6.16□□□□□ -1.42
VPS13D-212ENST00000543766 SPAG11AQ6PDA7 123 aa6.16□□□□□ -1.42
VPS13D-212ENST00000543766 LITAFQ99732 161 aa6.16□□□□□ -1.42
VPS13D-212ENST00000543766 C11orf21Q9P2W6 132 aa6.16□□□□□ -1.42
VPS13D-212ENST00000543766 RPL36AP83881 106 aaKnown RBP6.15□□□□□ -1.42
VPS13D-212ENST00000543766 MIR22HGQ0VDD5 57 aa6.15□□□□□ -1.42
VPS13D-212ENST00000543766 RPL36ALQ969Q0 106 aaKnown RBP6.15□□□□□ -1.42
VPS13D-212ENST00000543766 SPG11Q96JI7 2443 aa6.15□□□□□ -1.42
VPS13D-212ENST00000543766 CSMD2Q7Z408 3487 aa6.15□□□□□ -1.42
VPS13D-212ENST00000543766 DPM3Q9P2X0 92 aa6.15□□□□□ -1.42
VPS13D-212ENST00000543766 LRBAP50851 2863 aa6.15□□□□□ -1.42
VPS13D-212ENST00000543766 MAST4O15021 2626 aa6.15□□□□□ -1.43
VPS13D-212ENST00000543766 HCP5Q6MZN7 132 aa6.15□□□□□ -1.43
VPS13D-212ENST00000543766 GAFA1Q96PS6 74 aa6.15□□□□□ -1.43
VPS13D-212ENST00000543766 C22orf24Q9Y442 160 aa6.15□□□□□ -1.43
VPS13D-212ENST00000543766 POLQO75417 2590 aa6.15□□□□□ -1.43
VPS13D-212ENST00000543766 RPL37AP8A6NKH3 93 aa6.14□□□□□ -1.43
VPS13D-212ENST00000543766 CELSR1Q9NYQ6 3014 aa6.14□□□□□ -1.43
VPS13D-212ENST00000543766 CCDC168Q8NDH2 2452 aa6.14□□□□□ -1.43
VPS13D-212ENST00000543766 CHTF8P0CG12 524 aa6.14□□□□□ -1.43
VPS13D-212ENST00000543766 Q8NAQ8 132 aa6.13□□□□□ -1.43
VPS13D-212ENST00000543766 Q8TAT8 98 aa6.13□□□□□ -1.43
VPS13D-212ENST00000543766 VPS13CQ709C8 3753 aa6.13□□□□□ -1.43
VPS13D-212ENST00000543766 K7EIM0 57 aa6.13□□□□□ -1.43
VPS13D-212ENST00000543766 CRYBG3Q68DQ2 2970 aa6.13□□□□□ -1.43
VPS13D-212ENST00000543766 C11orf71Q6IPW1 123 aa6.13□□□□□ -1.43
VPS13D-212ENST00000543766 ZNF702PQ9H963 129 aa6.13□□□□□ -1.43
VPS13D-212ENST00000543766 SMAD5-AS1Q9Y6J3 95 aa6.13□□□□□ -1.43
VPS13D-212ENST00000543766 IGLV1-44P01699 117 aa6.13□□□□□ -1.43
VPS13D-212ENST00000543766 DNAJC9-AS1A6NH13 148 aa6.12□□□□□ -1.43
VPS13D-212ENST00000543766 S4R3C0 116 aa6.12□□□□□ -1.43
VPS13D-212ENST00000543766 IGHV3-21A0A0B4J1V1 117 aa6.12□□□□□ -1.43
VPS13D-212ENST00000543766 ABCA12Q86UK0 2595 aa6.12□□□□□ -1.43
VPS13D-212ENST00000543766 IGLV1-51P01701 117 aa6.12□□□□□ -1.43
VPS13D-212ENST00000543766 IGHV1-46P01743 117 aa6.12□□□□□ -1.43
VPS13D-212ENST00000543766 LOC101927531A0A1B0GV80 90 aa6.11□□□□□ -1.43
VPS13D-212ENST00000543766 USP9XQ93008 2570 aaPredicted RBP6.11□□□□□ -1.43
VPS13D-212ENST00000543766 DEFB112Q30KQ8 113 aa6.11□□□□□ -1.43
VPS13D-212ENST00000543766 IGHV3-16A0A0C4DH30 117 aa6.11□□□□□ -1.43
VPS13D-212ENST00000543766 DEFB109BQ30KR1 87 aa6.11□□□□□ -1.43
VPS13D-212ENST00000543766 ATP6V0E1O15342 81 aa6.1□□□□□ -1.43
VPS13D-212ENST00000543766 F8W735 103 aaPredicted RBP6.1□□□□□ -1.43
VPS13D-212ENST00000543766 ROMO1P60602 79 aa6.1□□□□□ -1.43
VPS13D-212ENST00000543766 RPL39P62891 51 aaKnown RBP6.1□□□□□ -1.43
VPS13D-212ENST00000543766 MYO9AB2RTY4 2548 aa6.09□□□□□ -1.43
VPS13D-212ENST00000543766 Q8N9L7 120 aa6.09□□□□□ -1.43
VPS13D-212ENST00000543766 Q8N9P0 234 aaPredicted RBP6.09□□□□□ -1.43
VPS13D-212ENST00000543766 RPL39LQ96EH5 51 aaKnown RBP6.09□□□□□ -1.43
VPS13D-212ENST00000543766 JMJD7-PLA2G4BH0Y9G9 81 aa6.09□□□□□ -1.44
VPS13D-212ENST00000543766 C9orf106Q8NAJ2 232 aa6.09□□□□□ -1.44
VPS13D-212ENST00000543766 TEP1Q99973 2627 aaKnown RBP6.09□□□□□ -1.44
VPS13D-212ENST00000543766 TENM4Q6N022 2769 aa6.08□□□□□ -1.44
VPS13D-212ENST00000543766 USP9YO00507 2555 aaPredicted RBP6.08□□□□□ -1.44
VPS13D-212ENST00000543766 A0A087WYN8 130 aa6.08□□□□□ -1.44
VPS13D-212ENST00000543766 LINC00208Q96KT6 92 aa6.08□□□□□ -1.44
VPS13D-212ENST00000543766 PRAC2D3DTV9 90 aa6.08□□□□□ -1.44
VPS13D-212ENST00000543766 TRBV6-5A0A0K0K1A5 114 aa6.07□□□□□ -1.44
VPS13D-212ENST00000543766 SUMO4Q6EEV6 95 aa6.07□□□□□ -1.44
VPS13D-212ENST00000543766 ROS1P08922 2347 aa6.07□□□□□ -1.44
VPS13D-212ENST00000543766 CLPSL1A2RUU4 121 aa6.07□□□□□ -1.44
VPS13D-212ENST00000543766 K7ERS5 55 aa6.07□□□□□ -1.44
VPS13D-212ENST00000543766 IGHV4OR15-8A0A075B7B6 117 aa6.07□□□□□ -1.44
VPS13D-212ENST00000543766 A0A087WW49 117 aa6.07□□□□□ -1.44
VPS13D-212ENST00000543766 POLR2KP53803 58 aaKnown RBP6.07□□□□□ -1.44
VPS13D-212ENST00000543766 LINC00315P59091 139 aa6.07□□□□□ -1.44
VPS13D-212ENST00000543766 WFDC10AQ9H1F0 79 aa6.07□□□□□ -1.44
VPS13D-212ENST00000543766 CDC42SE2Q9NRR3 84 aa6.07□□□□□ -1.44
VPS13D-212ENST00000543766 MTORP42345 2549 aa6.06□□□□□ -1.44
VPS13D-212ENST00000543766 MINOS1-NBL1R4GNA1 71 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms