RNA–Protein interactions for RNA: ENST00000536079.5

DDX55-204, Transcript of DEAD-box helicase 55, humanhuman

TSL 2

Gene DDX55, Length 765 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-204ENST00000536079 HIST1H2BMQ99879 126 aa11.32□□□□□ -0.6
DDX55-204ENST00000536079 MRPL35Q9NZE8 188 aaKnown RBP11.32□□□□□ -0.6
DDX55-204ENST00000536079 TOMM7Q9P0U1 55 aa11.32□□□□□ -0.6
DDX55-204ENST00000536079 ZNF22P17026 224 aaPredicted RBP11.31□□□□□ -0.6
DDX55-204ENST00000536079 LOC107984640A0A0U1RRK4 108 aa11.3□□□□□ -0.6
DDX55-204ENST00000536079 C11orf86A6NJI1 115 aa11.3□□□□□ -0.6
DDX55-204ENST00000536079 F8WDY8 70 aa11.3□□□□□ -0.6
DDX55-204ENST00000536079 PTTG1IPP53801 180 aa11.3□□□□□ -0.6
DDX55-204ENST00000536079 GAGE2BQ13066 116 aa11.3□□□□□ -0.6
DDX55-204ENST00000536079 RNF151Q2KHN1 245 aa11.3□□□□□ -0.6
DDX55-204ENST00000536079 C9orf116Q5BN46 136 aaPredicted RBP11.3□□□□□ -0.6
DDX55-204ENST00000536079 DPH3Q96FX2 82 aa11.3□□□□□ -0.6
DDX55-204ENST00000536079 KRTAP10-4P60372 401 aaPredicted RBP11.29□□□□□ -0.6
DDX55-204ENST00000536079 Q8IZM0 81 aa11.29□□□□□ -0.6
DDX55-204ENST00000536079 PACRGQ96M98 296 aaPredicted RBP11.29□□□□□ -0.6
DDX55-204ENST00000536079 PLAC8Q9NZF1 115 aa11.29□□□□□ -0.6
DDX55-204ENST00000536079 S100A1P23297 94 aa11.28□□□□□ -0.6
DDX55-204ENST00000536079 SRRM2Q9UQ35 2752 aaKnown RBP11.27□□□□□ -0.61
DDX55-204ENST00000536079 FAM229AH3BQW9 127 aa11.27□□□□□ -0.61
DDX55-204ENST00000536079 PRSS2P07478 247 aa11.27□□□□□ -0.61
DDX55-204ENST00000536079 RPL18AQ02543 176 aaKnown RBP11.27□□□□□ -0.61
DDX55-204ENST00000536079 C6orf226Q5I0X4 101 aa11.27□□□□□ -0.61
DDX55-204ENST00000536079 Q6ZRP5 223 aa11.27□□□□□ -0.61
DDX55-204ENST00000536079 STPG4Q8N801 248 aa11.27□□□□□ -0.61
DDX55-204ENST00000536079 CHTOPQ9Y3Y2 248 aaKnown RBP11.27□□□□□ -0.61
DDX55-204ENST00000536079 TRAV12-1A0A0B4J245 112 aa11.26□□□□□ -0.61
DDX55-204ENST00000536079 A0A1W2PNN7 141 aa11.26□□□□□ -0.61
DDX55-204ENST00000536079 FABP4P15090 132 aa11.26□□□□□ -0.61
DDX55-204ENST00000536079 COX7B2Q8TF08 81 aa11.26□□□□□ -0.61
DDX55-204ENST00000536079 LEPROTL1O95214 131 aa11.25□□□□□ -0.61
DDX55-204ENST00000536079 IGLV5-39A0A0G2JS06 123 aa11.24□□□□□ -0.61
DDX55-204ENST00000536079 TRBV30A0A0K0K1B3 111 aa11.24□□□□□ -0.61
DDX55-204ENST00000536079 H0Y8G0 127 aa11.24□□□□□ -0.61
DDX55-204ENST00000536079 TLX1NBP0CAT3 122 aa11.24□□□□□ -0.61
DDX55-204ENST00000536079 CKS1BP61024 79 aa11.24□□□□□ -0.61
DDX55-204ENST00000536079 H3BRM9 83 aa11.23□□□□□ -0.61
DDX55-204ENST00000536079 TMEM170BQ5T4T1 132 aa11.23□□□□□ -0.61
DDX55-204ENST00000536079 ODF1Q14990 250 aa11.22□□□□□ -0.61
DDX55-204ENST00000536079 GAGE2EQ4V326 116 aa11.22□□□□□ -0.61
DDX55-204ENST00000536079 LINC00474Q9P2X8 69 aa11.22□□□□□ -0.61
DDX55-204ENST00000536079 GAGE2DQ9UEU5 116 aa11.22□□□□□ -0.61
DDX55-204ENST00000536079 FAM168BA1KXE4 195 aa11.21□□□□□ -0.61
DDX55-204ENST00000536079 F8VRH5 84 aa11.21□□□□□ -0.61
DDX55-204ENST00000536079 PKIGQ9Y2B9 76 aa11.21□□□□□ -0.61
DDX55-204ENST00000536079 PKHD1L1Q86WI1 4243 aa11.21□□□□□ -0.62
DDX55-204ENST00000536079 KRTAP7-1Q8IUC3 87 aa11.2□□□□□ -0.62
DDX55-204ENST00000536079 TMEM223A0PJW6 202 aa11.19□□□□□ -0.62
DDX55-204ENST00000536079 PLA2G1BP04054 148 aaKnown RBP11.19□□□□□ -0.62
DDX55-204ENST00000536079 INAFM2P0DMQ5 153 aa11.19□□□□□ -0.62
DDX55-204ENST00000536079 RPL37AP61513 92 aaKnown RBP11.19□□□□□ -0.62
DDX55-204ENST00000536079 C9orf129Q5T035 196 aaKnown RBP11.19□□□□□ -0.62
DDX55-204ENST00000536079 PMCHL2Q9BQD1 86 aa11.19□□□□□ -0.62
DDX55-204ENST00000536079 HSPB8Q9UJY1 196 aa11.19□□□□□ -0.62
DDX55-204ENST00000536079 NDUFC2-KCTD14E9PQ53 114 aa11.18□□□□□ -0.62
DDX55-204ENST00000536079 CXCL5P42830 114 aa11.18□□□□□ -0.62
DDX55-204ENST00000536079 COA6Q5JTJ3 125 aaKnown RBP11.18□□□□□ -0.62
DDX55-204ENST00000536079 HNRNPA3P51991 378 aaKnown RBP11.17□□□□□ -0.62
DDX55-204ENST00000536079 PHF5AQ7RTV0 110 aaKnown RBP11.15□□□□□ -0.62
DDX55-204ENST00000536079 MYCBP2O75592 4640 aa11.15□□□□□ -0.63
DDX55-204ENST00000536079 XAGE1AQ9HD64 81 aa11.14□□□□□ -0.63
DDX55-204ENST00000536079 FAM19A5Q7Z5A7 132 aaPredicted RBP11.13□□□□□ -0.63
DDX55-204ENST00000536079 ZNF625Q96I27 306 aaPredicted RBP11.13□□□□□ -0.63
DDX55-204ENST00000536079 MAP1LC3CQ9BXW4 147 aa11.13□□□□□ -0.63
DDX55-204ENST00000536079 SERTAD4-AS1Q5TG53 156 aa11.12□□□□□ -0.63
DDX55-204ENST00000536079 KRTAP11-1Q8IUC1 163 aa11.12□□□□□ -0.63
DDX55-204ENST00000536079 SYS1-DBNDD2H3BUS1 97 aa11.11□□□□□ -0.63
DDX55-204ENST00000536079 C7orf33Q8WU49 177 aa11.11□□□□□ -0.63
DDX55-204ENST00000536079 FLG2Q5D862 2391 aaPredicted RBP11.11□□□□□ -0.63
DDX55-204ENST00000536079 DPM2O94777 84 aa11.1□□□□□ -0.63
DDX55-204ENST00000536079 TSPEAR-AS2P59090 65 aa11.1□□□□□ -0.63
DDX55-204ENST00000536079 IGKCP01834 107 aa11.09□□□□□ -0.63
DDX55-204ENST00000536079 PLNP26678 52 aa11.09□□□□□ -0.63
DDX55-204ENST00000536079 PFN2P35080 140 aa11.09□□□□□ -0.63
DDX55-204ENST00000536079 PRR3P79522 188 aaKnown RBP11.09□□□□□ -0.63
DDX55-204ENST00000536079 C3orf79P0CE67 100 aa11.08□□□□□ -0.64
DDX55-204ENST00000536079 ERG28Q9UKR5 140 aa11.07□□□□□ -0.64
DDX55-204ENST00000536079 LRP1Q07954 4544 aaKnown RBP11.06□□□□□ -0.64
DDX55-204ENST00000536079 LINC01545Q5VT33 79 aa11.06□□□□□ -0.64
DDX55-204ENST00000536079 FAT3Q8TDW7 4589 aa11.06□□□□□ -0.64
DDX55-204ENST00000536079 M0QXV9 152 aa11.05□□□□□ -0.64
DDX55-204ENST00000536079 LEPROTO15243 131 aa11.05□□□□□ -0.64
DDX55-204ENST00000536079 PET117Q6UWS5 81 aa11.04□□□□□ -0.64
DDX55-204ENST00000536079 PSORS1C2Q9UIG4 136 aa11.04□□□□□ -0.64
DDX55-204ENST00000536079 C22orf24Q9Y442 160 aa11.04□□□□□ -0.64
DDX55-204ENST00000536079 A0A0U1RRA0 63 aa11.03□□□□□ -0.64
DDX55-204ENST00000536079 KRTDAPP60985 99 aa11.03□□□□□ -0.64
DDX55-204ENST00000536079 HIST3H2BBQ8N257 126 aa11.03□□□□□ -0.64
DDX55-204ENST00000536079 Q8NDZ9 215 aa11.03□□□□□ -0.64
DDX55-204ENST00000536079 SND1-IT1Q9HBX3 110 aa11.02□□□□□ -0.65
DDX55-204ENST00000536079 NDUFA12Q9UI09 145 aa11.02□□□□□ -0.65
DDX55-204ENST00000536079 J3QQQ9 107 aa11□□□□□ -0.65
DDX55-204ENST00000536079 SMIM13P0DJ93 91 aa11□□□□□ -0.65
DDX55-204ENST00000536079 COX17Q14061 63 aa11□□□□□ -0.65
DDX55-204ENST00000536079 PLEKHB2Q96CS7 222 aa11□□□□□ -0.65
DDX55-204ENST00000536079 LINC00158P58513 81 aa10.99□□□□□ -0.65
DDX55-204ENST00000536079 HERVK_113P61574 105 aa10.99□□□□□ -0.65
DDX55-204ENST00000536079 SFTA2Q6UW10 78 aa10.99□□□□□ -0.65
DDX55-204ENST00000536079 PLA2G2DQ9UNK4 145 aa10.99□□□□□ -0.65
DDX55-204ENST00000536079 SRSF9Q13242 221 aaKnown RBP eCLIP10.98□□□□□ -0.651e-6■■■■□ 21.5
DDX55-204ENST00000536079 C1orf137Q5JT78 98 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms