RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 IGLC3P0DOY3 106 aa8.45□□□□□ -1.06
VPS28-210ENST00000529182 STPG4Q8N801 248 aa8.45□□□□□ -1.06
VPS28-210ENST00000529182 PLAC8Q9NZF1 115 aa8.45□□□□□ -1.06
VPS28-210ENST00000529182 PKIGQ9Y2B9 76 aa8.45□□□□□ -1.06
VPS28-210ENST00000529182 MYCBP2O75592 4640 aa8.44□□□□□ -1.06
VPS28-210ENST00000529182 RNF151Q2KHN1 245 aa8.44□□□□□ -1.06
VPS28-210ENST00000529182 C9orf116Q5BN46 136 aaPredicted RBP8.44□□□□□ -1.06
VPS28-210ENST00000529182 C6orf226Q5I0X4 101 aa8.44□□□□□ -1.06
VPS28-210ENST00000529182 Q8IZM0 81 aa8.44□□□□□ -1.06
VPS28-210ENST00000529182 IFI27L1Q96BM0 104 aa8.44□□□□□ -1.06
VPS28-210ENST00000529182 PLA2G1BP04054 148 aaKnown RBP8.43□□□□□ -1.06
VPS28-210ENST00000529182 INAFM2P0DMQ5 153 aa8.43□□□□□ -1.06
VPS28-210ENST00000529182 ZNF22P17026 224 aaPredicted RBP8.43□□□□□ -1.06
VPS28-210ENST00000529182 LINC00474Q9P2X8 69 aa8.43□□□□□ -1.06
VPS28-210ENST00000529182 TRBV30A0A0K0K1B3 111 aa8.42□□□□□ -1.06
VPS28-210ENST00000529182 C11orf86A6NJI1 115 aa8.42□□□□□ -1.06
VPS28-210ENST00000529182 KRTAP10-4P60372 401 aaPredicted RBP8.42□□□□□ -1.06
VPS28-210ENST00000529182 CKS1BP61024 79 aa8.42□□□□□ -1.06
VPS28-210ENST00000529182 Q6ZRP5 223 aa8.42□□□□□ -1.06
VPS28-210ENST00000529182 CHTOPQ9Y3Y2 248 aaKnown RBP8.42□□□□□ -1.06
VPS28-210ENST00000529182 A0A1W2PNN7 141 aa8.41□□□□□ -1.06
VPS28-210ENST00000529182 H3BRM9 83 aa8.41□□□□□ -1.06
VPS28-210ENST00000529182 HIST1H2BKO60814 126 aa8.41□□□□□ -1.06
VPS28-210ENST00000529182 HIST1H2BJP06899 126 aa8.41□□□□□ -1.06
VPS28-210ENST00000529182 TLX1NBP0CAT3 122 aa8.41□□□□□ -1.06
VPS28-210ENST00000529182 HIST1H2BOP23527 126 aa8.41□□□□□ -1.06
VPS28-210ENST00000529182 HIST1H2BBP33778 126 aa8.41□□□□□ -1.06
VPS28-210ENST00000529182 HIST1H2BDP58876 126 aa8.41□□□□□ -1.06
VPS28-210ENST00000529182 RPL37AP61513 92 aaKnown RBP8.41□□□□□ -1.06
VPS28-210ENST00000529182 HIST1H2BCP62807 126 aa8.41□□□□□ -1.06
VPS28-210ENST00000529182 HIST2H2BEQ16778 126 aa8.41□□□□□ -1.06
VPS28-210ENST00000529182 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.41□□□□□ -1.06
VPS28-210ENST00000529182 COX7B2Q8TF08 81 aa8.41□□□□□ -1.06
VPS28-210ENST00000529182 HIST1H2BHQ93079 126 aa8.41□□□□□ -1.06
VPS28-210ENST00000529182 HIST1H2BNQ99877 126 aa8.41□□□□□ -1.06
VPS28-210ENST00000529182 HIST1H2BMQ99879 126 aa8.41□□□□□ -1.06
VPS28-210ENST00000529182 FLG2Q5D862 2391 aaPredicted RBP8.41□□□□□ -1.06
VPS28-210ENST00000529182 TRAV12-1A0A0B4J245 112 aa8.4□□□□□ -1.06
VPS28-210ENST00000529182 H0Y8G0 127 aa8.4□□□□□ -1.06
VPS28-210ENST00000529182 LEPROTL1O95214 131 aa8.4□□□□□ -1.06
VPS28-210ENST00000529182 GAGE2EQ4V326 116 aa8.4□□□□□ -1.06
VPS28-210ENST00000529182 GAGE2DQ9UEU5 116 aa8.4□□□□□ -1.06
VPS28-210ENST00000529182 FABP4P15090 132 aa8.39□□□□□ -1.07
VPS28-210ENST00000529182 TMEM170BQ5T4T1 132 aa8.39□□□□□ -1.07
VPS28-210ENST00000529182 IGLV5-39A0A0G2JS06 123 aa8.38□□□□□ -1.07
VPS28-210ENST00000529182 F8VRH5 84 aa8.38□□□□□ -1.07
VPS28-210ENST00000529182 FAM168BA1KXE4 195 aa8.37□□□□□ -1.07
VPS28-210ENST00000529182 NDUFC2-KCTD14E9PQ53 114 aa8.37□□□□□ -1.07
VPS28-210ENST00000529182 CXCL5P42830 114 aa8.37□□□□□ -1.07
VPS28-210ENST00000529182 PKHD1L1Q86WI1 4243 aa8.37□□□□□ -1.07
VPS28-210ENST00000529182 ODF1Q14990 250 aa8.36□□□□□ -1.07
VPS28-210ENST00000529182 C7orf33Q8WU49 177 aa8.36□□□□□ -1.07
VPS28-210ENST00000529182 HNRNPA3P51991 378 aaKnown RBP8.35□□□□□ -1.07
VPS28-210ENST00000529182 C9orf129Q5T035 196 aaKnown RBP8.35□□□□□ -1.07
VPS28-210ENST00000529182 HSPB8Q9UJY1 196 aa8.35□□□□□ -1.07
VPS28-210ENST00000529182 LRP1Q07954 4544 aaKnown RBP8.34□□□□□ -1.07
VPS28-210ENST00000529182 TMEM223A0PJW6 202 aa8.34□□□□□ -1.07
VPS28-210ENST00000529182 COA6Q5JTJ3 125 aaKnown RBP8.34□□□□□ -1.07
VPS28-210ENST00000529182 PHF5AQ7RTV0 110 aaKnown RBP8.34□□□□□ -1.07
VPS28-210ENST00000529182 FAM19A5Q7Z5A7 132 aaPredicted RBP8.34□□□□□ -1.07
VPS28-210ENST00000529182 KRTAP7-1Q8IUC3 87 aa8.33□□□□□ -1.08
VPS28-210ENST00000529182 PMCHL2Q9BQD1 86 aa8.33□□□□□ -1.08
VPS28-210ENST00000529182 XAGE1AQ9HD64 81 aa8.33□□□□□ -1.08
VPS28-210ENST00000529182 FAT3Q8TDW7 4589 aa8.32□□□□□ -1.08
VPS28-210ENST00000529182 PRR3P79522 188 aaKnown RBP8.31□□□□□ -1.08
VPS28-210ENST00000529182 ZNF625Q96I27 306 aaPredicted RBP8.31□□□□□ -1.08
VPS28-210ENST00000529182 TMA7Q9Y2S6 64 aaKnown RBP8.31□□□□□ -1.08
VPS28-210ENST00000529182 SERTAD4-AS1Q5TG53 156 aa8.3□□□□□ -1.08
VPS28-210ENST00000529182 MAP1LC3CQ9BXW4 147 aa8.3□□□□□ -1.08
VPS28-210ENST00000529182 M0QXV9 152 aa8.29□□□□□ -1.08
VPS28-210ENST00000529182 PFN2P35080 140 aa8.29□□□□□ -1.08
VPS28-210ENST00000529182 HERC1Q15751 4861 aa8.29□□□□□ -1.08
VPS28-210ENST00000529182 DPM2O94777 84 aa8.28□□□□□ -1.08
VPS28-210ENST00000529182 PLNP26678 52 aa8.28□□□□□ -1.08
VPS28-210ENST00000529182 KRTAP11-1Q8IUC1 163 aa8.28□□□□□ -1.08
VPS28-210ENST00000529182 ERG28Q9UKR5 140 aa8.28□□□□□ -1.08
VPS28-210ENST00000529182 DMBT1Q9UGM3 2413 aaPredicted RBP8.28□□□□□ -1.08
VPS28-210ENST00000529182 C5orf52A6NGY3 159 aa8.27□□□□□ -1.09
VPS28-210ENST00000529182 SYS1-DBNDD2H3BUS1 97 aa8.27□□□□□ -1.09
VPS28-210ENST00000529182 IGKCP01834 107 aa8.27□□□□□ -1.09
VPS28-210ENST00000529182 PSORS1C2Q9UIG4 136 aa8.27□□□□□ -1.09
VPS28-210ENST00000529182 TSPEAR-AS2P59090 65 aa8.26□□□□□ -1.09
VPS28-210ENST00000529182 A0A0U1RRA0 63 aa8.25□□□□□ -1.09
VPS28-210ENST00000529182 SNRPEP62304 92 aaKnown RBP8.25□□□□□ -1.09
VPS28-210ENST00000529182 HIST3H2BBQ8N257 126 aa8.25□□□□□ -1.09
VPS28-210ENST00000529182 C22orf24Q9Y442 160 aa8.25□□□□□ -1.09
VPS28-210ENST00000529182 LEPROTO15243 131 aa8.24□□□□□ -1.09
VPS28-210ENST00000529182 C3orf79P0CE67 100 aa8.24□□□□□ -1.09
VPS28-210ENST00000529182 UBE2BP63146 152 aa8.24□□□□□ -1.09
VPS28-210ENST00000529182 C1orf137Q5JT78 98 aa8.24□□□□□ -1.09
VPS28-210ENST00000529182 SFTA2Q6UW10 78 aa8.24□□□□□ -1.09
VPS28-210ENST00000529182 NDUFA12Q9UI09 145 aa8.24□□□□□ -1.09
VPS28-210ENST00000529182 COX17Q14061 63 aa8.23□□□□□ -1.09
VPS28-210ENST00000529182 SND1-IT1Q9HBX3 110 aa8.23□□□□□ -1.09
VPS28-210ENST00000529182 S100A6P06703 90 aa8.22□□□□□ -1.09
VPS28-210ENST00000529182 SMIM13P0DJ93 91 aa8.22□□□□□ -1.09
VPS28-210ENST00000529182 LINC00158P58513 81 aa8.22□□□□□ -1.09
VPS28-210ENST00000529182 KRTDAPP60985 99 aa8.22□□□□□ -1.09
VPS28-210ENST00000529182 HERVK_113P61574 105 aa8.22□□□□□ -1.09
VPS28-210ENST00000529182 LINC01545Q5VT33 79 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms