RNA–Protein interactions for RNA: ENST00000525121.2

HMGB1P40-201, Transcript of high mobility group box 1 pseudogene 40, humanhuman

BASIC

Gene HMGB1P40, Length 540 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P40-201ENST00000525121 NDUFC2-KCTD14E9PQ53 114 aa3.44□□□□□ -1.86
HMGB1P40-201ENST00000525121 INAFM2P0DMQ5 153 aa3.44□□□□□ -1.86
HMGB1P40-201ENST00000525121 KIAA0087Q14695 138 aa3.44□□□□□ -1.86
HMGB1P40-201ENST00000525121 C2orf82Q6UX34 121 aa3.44□□□□□ -1.86
HMGB1P40-201ENST00000525121 C6orf48Q9UBA6 75 aa3.44□□□□□ -1.86
HMGB1P40-201ENST00000525121 C11orf86A6NJI1 115 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 PANO1I0J062 215 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 HIST1H2BKO60814 126 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 ATP6V1G1O75348 118 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 HIST1H2BJP06899 126 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 TLX1NBP0CAT3 122 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 FABP4P15090 132 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 ZNF22P17026 224 aaPredicted RBP3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 HIST1H2BOP23527 126 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 PLNP26678 52 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 HIST1H2BBP33778 126 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 HIST1H2BDP58876 126 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 HIST1H2BCP62807 126 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 HIST2H2BEQ16778 126 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 GAGE2EQ4V326 116 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 C10orf25Q5T742 122 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 HIST1H2BHQ93079 126 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 HIST1H2BNQ99877 126 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 HIST1H2BMQ99879 126 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 MAP1LC3CQ9BXW4 147 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 GAGE2DQ9UEU5 116 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 DNAH11Q96DT5 4516 aa3.43□□□□□ -1.86
HMGB1P40-201ENST00000525121 HERVK_113P61574 105 aa3.42□□□□□ -1.86
HMGB1P40-201ENST00000525121 C9orf116Q5BN46 136 aaPredicted RBP3.42□□□□□ -1.86
HMGB1P40-201ENST00000525121 IGLV5-39A0A0G2JS06 123 aa3.41□□□□□ -1.86
HMGB1P40-201ENST00000525121 DPM2O94777 84 aa3.41□□□□□ -1.86
HMGB1P40-201ENST00000525121 LINC00310P59036 64 aa3.41□□□□□ -1.86
HMGB1P40-201ENST00000525121 ODF1Q14990 250 aa3.41□□□□□ -1.86
HMGB1P40-201ENST00000525121 Q6ZRP5 223 aa3.41□□□□□ -1.86
HMGB1P40-201ENST00000525121 FAM19A5Q7Z5A7 132 aaPredicted RBP3.41□□□□□ -1.86
HMGB1P40-201ENST00000525121 KRTAP4-5Q9BYR2 181 aa3.41□□□□□ -1.86
HMGB1P40-201ENST00000525121 TMEM223A0PJW6 202 aa3.4□□□□□ -1.87
HMGB1P40-201ENST00000525121 C20orf202A1L168 122 aa3.4□□□□□ -1.87
HMGB1P40-201ENST00000525121 LINC00587B1AMM8 73 aa3.4□□□□□ -1.87
HMGB1P40-201ENST00000525121 M0QXV9 152 aa3.4□□□□□ -1.87
HMGB1P40-201ENST00000525121 NUPR1O60356 82 aa3.4□□□□□ -1.87
HMGB1P40-201ENST00000525121 IGKCP01834 107 aa3.4□□□□□ -1.87
HMGB1P40-201ENST00000525121 HERV-K104P63124 156 aa3.4□□□□□ -1.87
HMGB1P40-201ENST00000525121 UBE2BP63146 152 aa3.4□□□□□ -1.87
HMGB1P40-201ENST00000525121 COX17Q14061 63 aa3.4□□□□□ -1.87
HMGB1P40-201ENST00000525121 LBHQ53QV2 105 aaPredicted RBP3.4□□□□□ -1.87
HMGB1P40-201ENST00000525121 PLEKHB2Q96CS7 222 aa3.4□□□□□ -1.87
HMGB1P40-201ENST00000525121 ERG28Q9UKR5 140 aa3.4□□□□□ -1.87
HMGB1P40-201ENST00000525121 MYMXA0A1B0GTQ4 84 aa3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 A0A1W2PNN7 141 aa3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 SYS1-DBNDD2H3BUS1 97 aa3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 S100A6P06703 90 aa3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 LGALS3P17931 250 aaKnown RBP3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 S100A2P29034 98 aa3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 PFN2P35080 140 aa3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 AKR1D1P51857 326 aa3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 KRTDAPP60985 99 aa3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 PRR3P79522 188 aaKnown RBP3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 MEIG1Q5JSS6 88 aa3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 COA6Q5JTJ3 125 aaKnown RBP3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 NKAPP1Q8N9T2 125 aa3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 PMCHL2Q9BQD1 86 aa3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 XAGE1AQ9HD64 81 aa3.39□□□□□ -1.87
HMGB1P40-201ENST00000525121 DYNC1H1Q14204 4646 aaKnown RBP3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 FAM168BA1KXE4 195 aa3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 J3QL48 77 aa3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 LEPROTO15243 131 aa3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 NMUP48645 174 aa3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 LINC00158P58513 81 aa3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 RPL24P83731 157 aaKnown RBP3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 C9orf129Q5T035 196 aaKnown RBP3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 PET117Q6UWS5 81 aa3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 PHF5AQ7RTV0 110 aaKnown RBP3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 SVIPQ8NHG7 77 aa3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 ZNF625Q96I27 306 aaPredicted RBP3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 KRTAP17-1Q9BYP8 105 aa3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 NDUFA12Q9UI09 145 aa3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 LRP1BQ9NZR2 4599 aa3.38□□□□□ -1.87
HMGB1P40-201ENST00000525121 J3QQQ9 107 aa3.37□□□□□ -1.87
HMGB1P40-201ENST00000525121 C1orf137Q5JT78 98 aa3.37□□□□□ -1.87
HMGB1P40-201ENST00000525121 MRPL55Q7Z7F7 128 aaKnown RBP3.37□□□□□ -1.87
HMGB1P40-201ENST00000525121 SND1-IT1Q9HBX3 110 aa3.37□□□□□ -1.87
HMGB1P40-201ENST00000525121 TP73-AS1Q9UF72 201 aa3.37□□□□□ -1.87
HMGB1P40-201ENST00000525121 TMA7Q9Y2S6 64 aaKnown RBP3.37□□□□□ -1.87
HMGB1P40-201ENST00000525121 KIAA1109Q2LD37 5005 aa3.37□□□□□ -1.87
HMGB1P40-201ENST00000525121 A0A0U1RRA0 63 aa3.36□□□□□ -1.87
HMGB1P40-201ENST00000525121 C3orf79P0CE67 100 aa3.36□□□□□ -1.87
HMGB1P40-201ENST00000525121 C4orf48Q5BLP8 95 aa3.36□□□□□ -1.87
HMGB1P40-201ENST00000525121 SERTAD4-AS1Q5TG53 156 aa3.36□□□□□ -1.87
HMGB1P40-201ENST00000525121 LINC01545Q5VT33 79 aa3.36□□□□□ -1.87
HMGB1P40-201ENST00000525121 REG3GQ6UW15 175 aa3.36□□□□□ -1.87
HMGB1P40-201ENST00000525121 MIEN1Q9BRT3 115 aa3.36□□□□□ -1.87
HMGB1P40-201ENST00000525121 PSORS1C2Q9UIG4 136 aa3.36□□□□□ -1.87
HMGB1P40-201ENST00000525121 PLA2G2DQ9UNK4 145 aa3.36□□□□□ -1.87
HMGB1P40-201ENST00000525121 C22orf24Q9Y442 160 aa3.36□□□□□ -1.87
HMGB1P40-201ENST00000525121 HERC2O95714 4834 aa3.35□□□□□ -1.87
HMGB1P40-201ENST00000525121 HSPG2P98160 4391 aa3.35□□□□□ -1.87
HMGB1P40-201ENST00000525121 IGLV5-37A0A075B6J1 123 aa3.35□□□□□ -1.87
HMGB1P40-201ENST00000525121 GAGE10A6NGK3 116 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 129 ms