RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 Q8IZM0 81 aa10.06□□□□□ -0.8
LIME1-209ENST00000494776 COLCA2A8K830 154 aa10.04□□□□□ -0.8
LIME1-209ENST00000494776 H3BRM9 83 aa10.04□□□□□ -0.8
LIME1-209ENST00000494776 HSBP1O75506 76 aa10.04□□□□□ -0.8
LIME1-209ENST00000494776 SRRM2Q9UQ35 2752 aaKnown RBP10.04□□□□□ -0.8
LIME1-209ENST00000494776 DMBT1Q9UGM3 2413 aaPredicted RBP10.03□□□□□ -0.8
LIME1-209ENST00000494776 IGLV5-45A0A087WSX0 123 aa10.03□□□□□ -0.8
LIME1-209ENST00000494776 SMIM1B2RUZ4 78 aa10.03□□□□□ -0.8
LIME1-209ENST00000494776 TLX1NBP0CAT3 122 aa10.03□□□□□ -0.8
LIME1-209ENST00000494776 GAGE2EQ4V326 116 aa10.03□□□□□ -0.8
LIME1-209ENST00000494776 GAGE2DQ9UEU5 116 aa10.03□□□□□ -0.8
LIME1-209ENST00000494776 SPINK8P0C7L1 97 aa10.02□□□□□ -0.81
LIME1-209ENST00000494776 IGLC3P0DOY3 106 aa10.02□□□□□ -0.81
LIME1-209ENST00000494776 KRTAP10-4P60372 401 aaPredicted RBP10.02□□□□□ -0.81
LIME1-209ENST00000494776 Q6ZRP5 223 aa10.02□□□□□ -0.81
LIME1-209ENST00000494776 COX7B2Q8TF08 81 aa10.02□□□□□ -0.81
LIME1-209ENST00000494776 A0A1W2PNN7 141 aa10.01□□□□□ -0.81
LIME1-209ENST00000494776 CXCL5P42830 114 aa10.01□□□□□ -0.81
LIME1-209ENST00000494776 C9orf116Q5BN46 136 aaPredicted RBP10.01□□□□□ -0.81
LIME1-209ENST00000494776 NDUFC2-KCTD14E9PQ53 114 aa10□□□□□ -0.81
LIME1-209ENST00000494776 F8VRH5 84 aa10□□□□□ -0.81
LIME1-209ENST00000494776 SCO1O75880 301 aa10□□□□□ -0.81
LIME1-209ENST00000494776 FAM19A2Q8N3H0 131 aa10□□□□□ -0.81
LIME1-209ENST00000494776 IFI27L1Q96BM0 104 aa10□□□□□ -0.81
LIME1-209ENST00000494776 FLG2Q5D862 2391 aaPredicted RBP9.99□□□□□ -0.81
LIME1-209ENST00000494776 CHTOPQ9Y3Y2 248 aaKnown RBP9.99□□□□□ -0.81
LIME1-209ENST00000494776 HERC1Q15751 4861 aa9.98□□□□□ -0.81
LIME1-209ENST00000494776 SERF1AO75920 110 aa9.98□□□□□ -0.81
LIME1-209ENST00000494776 ZNF22P17026 224 aaPredicted RBP9.98□□□□□ -0.81
LIME1-209ENST00000494776 TMEM170BQ5T4T1 132 aa9.98□□□□□ -0.81
LIME1-209ENST00000494776 C11orf86A6NJI1 115 aa9.96□□□□□ -0.82
LIME1-209ENST00000494776 TRAV12-1A0A0B4J245 112 aa9.95□□□□□ -0.82
LIME1-209ENST00000494776 FAM168BA1KXE4 195 aa9.95□□□□□ -0.82
LIME1-209ENST00000494776 J3QL48 77 aa9.95□□□□□ -0.82
LIME1-209ENST00000494776 LEPROTL1O95214 131 aa9.95□□□□□ -0.82
LIME1-209ENST00000494776 PRR3P79522 188 aaKnown RBP9.95□□□□□ -0.82
LIME1-209ENST00000494776 FAM19A5Q7Z5A7 132 aaPredicted RBP9.95□□□□□ -0.82
LIME1-209ENST00000494776 MYCBP2O75592 4640 aa9.95□□□□□ -0.82
LIME1-209ENST00000494776 H0Y8G0 127 aa9.94□□□□□ -0.82
LIME1-209ENST00000494776 HNRNPA3P51991 378 aaKnown RBP9.94□□□□□ -0.82
LIME1-209ENST00000494776 PHF5AQ7RTV0 110 aaKnown RBP9.94□□□□□ -0.82
LIME1-209ENST00000494776 IGLV5-39A0A0G2JS06 123 aa9.92□□□□□ -0.82
LIME1-209ENST00000494776 LINC00310P59036 64 aa9.92□□□□□ -0.82
LIME1-209ENST00000494776 C9orf129Q5T035 196 aaKnown RBP9.92□□□□□ -0.82
LIME1-209ENST00000494776 XAGE1AQ9HD64 81 aa9.92□□□□□ -0.82
LIME1-209ENST00000494776 HSPB8Q9UJY1 196 aa9.92□□□□□ -0.82
LIME1-209ENST00000494776 NUPR1O60356 82 aa9.91□□□□□ -0.82
LIME1-209ENST00000494776 FABP4P15090 132 aa9.91□□□□□ -0.82
LIME1-209ENST00000494776 M0QXV9 152 aa9.9□□□□□ -0.82
LIME1-209ENST00000494776 KRTAP29-1A8MX34 341 aaPredicted RBP9.89□□□□□ -0.83
LIME1-209ENST00000494776 HIST1H2BKO60814 126 aa9.89□□□□□ -0.83
LIME1-209ENST00000494776 HIST1H2BJP06899 126 aa9.89□□□□□ -0.83
LIME1-209ENST00000494776 HIST1H2BOP23527 126 aa9.89□□□□□ -0.83
LIME1-209ENST00000494776 HIST1H2BBP33778 126 aa9.89□□□□□ -0.83
LIME1-209ENST00000494776 HIST1H2BDP58876 126 aa9.89□□□□□ -0.83
LIME1-209ENST00000494776 HIST1H2BCP62807 126 aa9.89□□□□□ -0.83
LIME1-209ENST00000494776 HIST2H2BEQ16778 126 aa9.89□□□□□ -0.83
LIME1-209ENST00000494776 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.89□□□□□ -0.83
LIME1-209ENST00000494776 HIST1H2BHQ93079 126 aa9.89□□□□□ -0.83
LIME1-209ENST00000494776 HIST1H2BNQ99877 126 aa9.89□□□□□ -0.83
LIME1-209ENST00000494776 HIST1H2BMQ99879 126 aa9.89□□□□□ -0.83
LIME1-209ENST00000494776 TMEM223A0PJW6 202 aa9.88□□□□□ -0.83
LIME1-209ENST00000494776 OXTP01178 125 aa9.88□□□□□ -0.83
LIME1-209ENST00000494776 PFN2P35080 140 aa9.88□□□□□ -0.83
LIME1-209ENST00000494776 UBE2BP63146 152 aa9.88□□□□□ -0.83
LIME1-209ENST00000494776 PSORS1C2Q9UIG4 136 aa9.88□□□□□ -0.83
LIME1-209ENST00000494776 ODF1Q14990 250 aa9.87□□□□□ -0.83
LIME1-209ENST00000494776 C1orf137Q5JT78 98 aa9.87□□□□□ -0.83
LIME1-209ENST00000494776 SFTA2Q6UW10 78 aa9.87□□□□□ -0.83
LIME1-209ENST00000494776 KRTAP7-1Q8IUC3 87 aa9.86□□□□□ -0.83
LIME1-209ENST00000494776 ZNF625Q96I27 306 aaPredicted RBP9.86□□□□□ -0.83
LIME1-209ENST00000494776 MAP1LC3CQ9BXW4 147 aa9.86□□□□□ -0.83
LIME1-209ENST00000494776 SERTAD4-AS1Q5TG53 156 aa9.85□□□□□ -0.83
LIME1-209ENST00000494776 ERG28Q9UKR5 140 aa9.85□□□□□ -0.83
LIME1-209ENST00000494776 PLNP26678 52 aa9.84□□□□□ -0.83
LIME1-209ENST00000494776 LBHQ53QV2 105 aaPredicted RBP9.84□□□□□ -0.83
LIME1-209ENST00000494776 SPINK6Q6UWN8 80 aa9.84□□□□□ -0.83
LIME1-209ENST00000494776 C22orf24Q9Y442 160 aa9.84□□□□□ -0.83
LIME1-209ENST00000494776 S100A1P23297 94 aa9.83□□□□□ -0.84
LIME1-209ENST00000494776 COX17Q14061 63 aa9.83□□□□□ -0.84
LIME1-209ENST00000494776 DPM2O94777 84 aa9.82□□□□□ -0.84
LIME1-209ENST00000494776 PMCHL2Q9BQD1 86 aa9.82□□□□□ -0.84
LIME1-209ENST00000494776 IGKCP01834 107 aa9.81□□□□□ -0.84
LIME1-209ENST00000494776 MRPL55Q7Z7F7 128 aaKnown RBP9.81□□□□□ -0.84
LIME1-209ENST00000494776 LINC00158P58513 81 aa9.8□□□□□ -0.84
LIME1-209ENST00000494776 HERVK_113P61574 105 aa9.8□□□□□ -0.84
LIME1-209ENST00000494776 SRSF9Q13242 221 aaKnown RBP eCLIP9.8□□□□□ -0.84
LIME1-209ENST00000494776 REG3GQ6UW15 175 aa9.8□□□□□ -0.84
LIME1-209ENST00000494776 KRTAP11-1Q8IUC1 163 aa9.8□□□□□ -0.84
LIME1-209ENST00000494776 NKAPP1Q8N9T2 125 aa9.8□□□□□ -0.84
LIME1-209ENST00000494776 TP73-AS1Q9UF72 201 aa9.8□□□□□ -0.84
LIME1-209ENST00000494776 PLA2G2DQ9UNK4 145 aa9.8□□□□□ -0.84
LIME1-209ENST00000494776 ATP6V1G1O75348 118 aa9.79□□□□□ -0.84
LIME1-209ENST00000494776 IGLV7-43P04211 117 aa9.79□□□□□ -0.84
LIME1-209ENST00000494776 SND1-IT1Q9HBX3 110 aa9.79□□□□□ -0.84
LIME1-209ENST00000494776 A0A0U1RRA0 63 aa9.78□□□□□ -0.84
LIME1-209ENST00000494776 MEIG1Q5JSS6 88 aa9.78□□□□□ -0.84
LIME1-209ENST00000494776 NDUFA12Q9UI09 145 aa9.78□□□□□ -0.84
LIME1-209ENST00000494776 MYMXA0A1B0GTQ4 84 aa9.77□□□□□ -0.85
LIME1-209ENST00000494776 SYS1-DBNDD2H3BUS1 97 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms