RNA–Protein interactions for RNA: ENST00000476428.1

MAP1LC3A-204, Transcript of microtubule associated protein 1 light chain 3 alpha, humanhuman

TSL 5

Gene MAP1LC3A, Length 851 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MAP1LC3A-204ENST00000476428 SMIM1B2RUZ4 78 aa13.27□□□□□ -0.29
MAP1LC3A-204ENST00000476428 C6orf226Q5I0X4 101 aa13.27□□□□□ -0.29
MAP1LC3A-204ENST00000476428 Q8IZM0 81 aa13.27□□□□□ -0.29
MAP1LC3A-204ENST00000476428 STPG4Q8N801 248 aa13.27□□□□□ -0.29
MAP1LC3A-204ENST00000476428 NUPR1O60356 82 aa13.26□□□□□ -0.29
MAP1LC3A-204ENST00000476428 PLA2G1BP04054 148 aaKnown RBP13.26□□□□□ -0.29
MAP1LC3A-204ENST00000476428 IFI27L1Q96BM0 104 aa13.26□□□□□ -0.29
MAP1LC3A-204ENST00000476428 SPINK8P0C7L1 97 aa13.25□□□□□ -0.29
MAP1LC3A-204ENST00000476428 RPL18AQ02543 176 aaKnown RBP13.25□□□□□ -0.29
MAP1LC3A-204ENST00000476428 TRBV30A0A0K0K1B3 111 aa13.24□□□□□ -0.29
MAP1LC3A-204ENST00000476428 INAFM2P0DMQ5 153 aa13.24□□□□□ -0.29
MAP1LC3A-204ENST00000476428 CKS1BP61024 79 aa13.24□□□□□ -0.29
MAP1LC3A-204ENST00000476428 VPS13BQ7Z7G8 4022 aa13.24□□□□□ -0.29
MAP1LC3A-204ENST00000476428 H3BRM9 83 aa13.23□□□□□ -0.29
MAP1LC3A-204ENST00000476428 TLX1NBP0CAT3 122 aa13.23□□□□□ -0.29
MAP1LC3A-204ENST00000476428 ZNF22P17026 224 aaPredicted RBP13.22□□□□□ -0.29
MAP1LC3A-204ENST00000476428 KRTAP10-4P60372 401 aaPredicted RBP13.22□□□□□ -0.29
MAP1LC3A-204ENST00000476428 CHTOPQ9Y3Y2 248 aaKnown RBP13.22□□□□□ -0.29
MAP1LC3A-204ENST00000476428 TRAV12-1A0A0B4J245 112 aa13.21□□□□□ -0.29
MAP1LC3A-204ENST00000476428 C11orf86A6NJI1 115 aa13.21□□□□□ -0.29
MAP1LC3A-204ENST00000476428 C9orf116Q5BN46 136 aaPredicted RBP13.21□□□□□ -0.29
MAP1LC3A-204ENST00000476428 Q6ZRP5 223 aa13.21□□□□□ -0.29
MAP1LC3A-204ENST00000476428 COX7B2Q8TF08 81 aa13.21□□□□□ -0.29
MAP1LC3A-204ENST00000476428 HIST1H2BKO60814 126 aa13.2□□□□□ -0.3
MAP1LC3A-204ENST00000476428 HIST1H2BJP06899 126 aa13.2□□□□□ -0.3
MAP1LC3A-204ENST00000476428 HIST1H2BOP23527 126 aa13.2□□□□□ -0.3
MAP1LC3A-204ENST00000476428 HIST1H2BBP33778 126 aa13.2□□□□□ -0.3
MAP1LC3A-204ENST00000476428 HIST1H2BDP58876 126 aa13.2□□□□□ -0.3
MAP1LC3A-204ENST00000476428 HIST1H2BCP62807 126 aa13.2□□□□□ -0.3
MAP1LC3A-204ENST00000476428 HIST2H2BEQ16778 126 aa13.2□□□□□ -0.3
MAP1LC3A-204ENST00000476428 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.2□□□□□ -0.3
MAP1LC3A-204ENST00000476428 HIST1H2BHQ93079 126 aa13.2□□□□□ -0.3
MAP1LC3A-204ENST00000476428 HIST1H2BNQ99877 126 aa13.2□□□□□ -0.3
MAP1LC3A-204ENST00000476428 HIST1H2BMQ99879 126 aa13.2□□□□□ -0.3
MAP1LC3A-204ENST00000476428 A0A1W2PNN7 141 aa13.19□□□□□ -0.3
MAP1LC3A-204ENST00000476428 LEPROTL1O95214 131 aa13.19□□□□□ -0.3
MAP1LC3A-204ENST00000476428 RPL37AP61513 92 aaKnown RBP13.19□□□□□ -0.3
MAP1LC3A-204ENST00000476428 SRRM2Q9UQ35 2752 aaKnown RBP13.18□□□□□ -0.3
MAP1LC3A-204ENST00000476428 F8VRH5 84 aa13.18□□□□□ -0.3
MAP1LC3A-204ENST00000476428 S100A1P23297 94 aa13.18□□□□□ -0.3
MAP1LC3A-204ENST00000476428 CXCL5P42830 114 aa13.18□□□□□ -0.3
MAP1LC3A-204ENST00000476428 GAGE2EQ4V326 116 aa13.18□□□□□ -0.3
MAP1LC3A-204ENST00000476428 GAGE2DQ9UEU5 116 aa13.18□□□□□ -0.3
MAP1LC3A-204ENST00000476428 IGLV5-39A0A0G2JS06 123 aa13.17□□□□□ -0.3
MAP1LC3A-204ENST00000476428 TMEM170BQ5T4T1 132 aa13.17□□□□□ -0.3
MAP1LC3A-204ENST00000476428 NDUFC2-KCTD14E9PQ53 114 aa13.16□□□□□ -0.3
MAP1LC3A-204ENST00000476428 ATP6V1G1O75348 118 aa13.16□□□□□ -0.3
MAP1LC3A-204ENST00000476428 FABP4P15090 132 aa13.15□□□□□ -0.3
MAP1LC3A-204ENST00000476428 C7orf33Q8WU49 177 aa13.15□□□□□ -0.3
MAP1LC3A-204ENST00000476428 HSPB8Q9UJY1 196 aa13.15□□□□□ -0.3
MAP1LC3A-204ENST00000476428 H0Y8G0 127 aa13.13□□□□□ -0.31
MAP1LC3A-204ENST00000476428 ODF1Q14990 250 aa13.12□□□□□ -0.31
MAP1LC3A-204ENST00000476428 FAM168BA1KXE4 195 aa13.11□□□□□ -0.31
MAP1LC3A-204ENST00000476428 TMEM223A0PJW6 202 aa13.1□□□□□ -0.31
MAP1LC3A-204ENST00000476428 C9orf129Q5T035 196 aaKnown RBP13.1□□□□□ -0.31
MAP1LC3A-204ENST00000476428 FLG2Q5D862 2391 aaPredicted RBP13.09□□□□□ -0.31
MAP1LC3A-204ENST00000476428 KRTAP7-1Q8IUC3 87 aa13.08□□□□□ -0.32
MAP1LC3A-204ENST00000476428 HNRNPA3P51991 378 aaKnown RBP13.07□□□□□ -0.32
MAP1LC3A-204ENST00000476428 PHF5AQ7RTV0 110 aaKnown RBP13.07□□□□□ -0.32
MAP1LC3A-204ENST00000476428 FAM19A5Q7Z5A7 132 aaPredicted RBP13.07□□□□□ -0.32
MAP1LC3A-204ENST00000476428 COA6Q5JTJ3 125 aaKnown RBP13.06□□□□□ -0.32
MAP1LC3A-204ENST00000476428 XAGE1AQ9HD64 81 aa13.06□□□□□ -0.32
MAP1LC3A-204ENST00000476428 MYCBP2O75592 4640 aa13.05□□□□□ -0.32
MAP1LC3A-204ENST00000476428 MAP1LC3CQ9BXW4 147 aa13.05□□□□□ -0.32
MAP1LC3A-204ENST00000476428 PRR3P79522 188 aaKnown RBP13.04□□□□□ -0.32
MAP1LC3A-204ENST00000476428 PMCHL2Q9BQD1 86 aa13.04□□□□□ -0.32
MAP1LC3A-204ENST00000476428 DPM2O94777 84 aa13.02□□□□□ -0.33
MAP1LC3A-204ENST00000476428 PLNP26678 52 aa13.02□□□□□ -0.33
MAP1LC3A-204ENST00000476428 ZNF625Q96I27 306 aaPredicted RBP13.02□□□□□ -0.33
MAP1LC3A-204ENST00000476428 PFN2P35080 140 aa13.01□□□□□ -0.33
MAP1LC3A-204ENST00000476428 SERTAD4-AS1Q5TG53 156 aa13.01□□□□□ -0.33
MAP1LC3A-204ENST00000476428 SFTA2Q6UW10 78 aa13□□□□□ -0.33
MAP1LC3A-204ENST00000476428 ERG28Q9UKR5 140 aa13□□□□□ -0.33
MAP1LC3A-204ENST00000476428 SYS1-DBNDD2H3BUS1 97 aa12.99□□□□□ -0.33
MAP1LC3A-204ENST00000476428 J3QL48 77 aa12.99□□□□□ -0.33
MAP1LC3A-204ENST00000476428 M0QXV9 152 aa12.99□□□□□ -0.33
MAP1LC3A-204ENST00000476428 IGKCP01834 107 aa12.99□□□□□ -0.33
MAP1LC3A-204ENST00000476428 KRTAP11-1Q8IUC1 163 aa12.98□□□□□ -0.33
MAP1LC3A-204ENST00000476428 PSORS1C2Q9UIG4 136 aa12.98□□□□□ -0.33
MAP1LC3A-204ENST00000476428 C22orf24Q9Y442 160 aa12.97□□□□□ -0.33
MAP1LC3A-204ENST00000476428 COX17Q14061 63 aa12.96□□□□□ -0.33
MAP1LC3A-204ENST00000476428 LEPROTO15243 131 aa12.95□□□□□ -0.34
MAP1LC3A-204ENST00000476428 PKHD1L1Q86WI1 4243 aa12.95□□□□□ -0.34
MAP1LC3A-204ENST00000476428 PET117Q6UWS5 81 aa12.94□□□□□ -0.34
MAP1LC3A-204ENST00000476428 NDUFA12Q9UI09 145 aa12.94□□□□□ -0.34
MAP1LC3A-204ENST00000476428 PLA2G2DQ9UNK4 145 aa12.94□□□□□ -0.34
MAP1LC3A-204ENST00000476428 C3orf79P0CE67 100 aa12.93□□□□□ -0.34
MAP1LC3A-204ENST00000476428 TSPEAR-AS2P59090 65 aa12.93□□□□□ -0.34
MAP1LC3A-204ENST00000476428 HERVK_113P61574 105 aa12.93□□□□□ -0.34
MAP1LC3A-204ENST00000476428 UBE2BP63146 152 aa12.93□□□□□ -0.34
MAP1LC3A-204ENST00000476428 LINC01545Q5VT33 79 aa12.93□□□□□ -0.34
MAP1LC3A-204ENST00000476428 PLEKHB2Q96CS7 222 aa12.93□□□□□ -0.34
MAP1LC3A-204ENST00000476428 SND1-IT1Q9HBX3 110 aa12.93□□□□□ -0.34
MAP1LC3A-204ENST00000476428 KRTAP29-1A8MX34 341 aaPredicted RBP12.92□□□□□ -0.34
MAP1LC3A-204ENST00000476428 LINC00158P58513 81 aa12.92□□□□□ -0.34
MAP1LC3A-204ENST00000476428 C1orf137Q5JT78 98 aa12.92□□□□□ -0.34
MAP1LC3A-204ENST00000476428 SRSF9Q13242 221 aaKnown RBP eCLIP12.91□□□□□ -0.34
MAP1LC3A-204ENST00000476428 LBHQ53QV2 105 aaPredicted RBP12.91□□□□□ -0.34
MAP1LC3A-204ENST00000476428 TP73-AS1Q9UF72 201 aa12.91□□□□□ -0.34
MAP1LC3A-204ENST00000476428 A0A0U1RRA0 63 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms