RNA–Protein interactions for RNA: ENST00000472490.1

BRCA1-211, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 3

Gene BRCA1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-211ENST00000472490 CXCL5P42830 114 aa9.05□□□□□ -0.96
BRCA1-211ENST00000472490 RYR1P21817 5038 aa9.04□□□□□ -0.96
BRCA1-211ENST00000472490 A0A087WYN8 130 aa9.04□□□□□ -0.96
BRCA1-211ENST00000472490 A0A096LNI7 61 aa9.04□□□□□ -0.96
BRCA1-211ENST00000472490 PTTG1IPP53801 180 aa9.04□□□□□ -0.96
BRCA1-211ENST00000472490 GAGE2BQ13066 116 aa9.04□□□□□ -0.96
BRCA1-211ENST00000472490 UNQ6190/PRO20217Q6UXQ8 127 aa9.04□□□□□ -0.96
BRCA1-211ENST00000472490 FAM19A2Q8N3H0 131 aa9.04□□□□□ -0.96
BRCA1-211ENST00000472490 PLAC8Q9NZF1 115 aa9.04□□□□□ -0.96
BRCA1-211ENST00000472490 TRAV12-1A0A0B4J245 112 aa9.03□□□□□ -0.96
BRCA1-211ENST00000472490 SMIM1B2RUZ4 78 aa9.03□□□□□ -0.96
BRCA1-211ENST00000472490 LEPROTL1O95214 131 aa9.03□□□□□ -0.96
BRCA1-211ENST00000472490 RPL18AQ02543 176 aaKnown RBP9.03□□□□□ -0.96
BRCA1-211ENST00000472490 STPG4Q8N801 248 aa9.03□□□□□ -0.96
BRCA1-211ENST00000472490 HSPB8Q9UJY1 196 aa9.03□□□□□ -0.96
BRCA1-211ENST00000472490 APOBP04114 4563 aaKnown RBP9.03□□□□□ -0.96
BRCA1-211ENST00000472490 TLX1NBP0CAT3 122 aa9.02□□□□□ -0.97
BRCA1-211ENST00000472490 C10orf25Q5T742 122 aa9.02□□□□□ -0.97
BRCA1-211ENST00000472490 KRTAP17-1Q9BYP8 105 aa9.02□□□□□ -0.97
BRCA1-211ENST00000472490 KRTAP4-5Q9BYR2 181 aa9.02□□□□□ -0.97
BRCA1-211ENST00000472490 C6orf48Q9UBA6 75 aa9.02□□□□□ -0.97
BRCA1-211ENST00000472490 CHTOPQ9Y3Y2 248 aaKnown RBP9.02□□□□□ -0.97
BRCA1-211ENST00000472490 HSPG2P98160 4391 aa9.01□□□□□ -0.97
BRCA1-211ENST00000472490 F8VRH5 84 aa9.01□□□□□ -0.97
BRCA1-211ENST00000472490 C2orf82Q6UX34 121 aa9.01□□□□□ -0.97
BRCA1-211ENST00000472490 COX7B2Q8TF08 81 aa9.01□□□□□ -0.97
BRCA1-211ENST00000472490 HIST1H2BKO60814 126 aa9□□□□□ -0.97
BRCA1-211ENST00000472490 HIST1H2BJP06899 126 aa9□□□□□ -0.97
BRCA1-211ENST00000472490 SPINK8P0C7L1 97 aa9□□□□□ -0.97
BRCA1-211ENST00000472490 HIST1H2BOP23527 126 aa9□□□□□ -0.97
BRCA1-211ENST00000472490 HIST1H2BBP33778 126 aa9□□□□□ -0.97
BRCA1-211ENST00000472490 HIST1H2BDP58876 126 aa9□□□□□ -0.97
BRCA1-211ENST00000472490 HIST1H2BCP62807 126 aa9□□□□□ -0.97
BRCA1-211ENST00000472490 HIST2H2BEQ16778 126 aa9□□□□□ -0.97
BRCA1-211ENST00000472490 HIST2H2BFQ5QNW6 126 aaPredicted RBP9□□□□□ -0.97
BRCA1-211ENST00000472490 TMEM170BQ5T4T1 132 aa9□□□□□ -0.97
BRCA1-211ENST00000472490 C7orf33Q8WU49 177 aa9□□□□□ -0.97
BRCA1-211ENST00000472490 HIST1H2BHQ93079 126 aa9□□□□□ -0.97
BRCA1-211ENST00000472490 HIST1H2BNQ99877 126 aa9□□□□□ -0.97
BRCA1-211ENST00000472490 HIST1H2BMQ99879 126 aa9□□□□□ -0.97
BRCA1-211ENST00000472490 NDUFC2-KCTD14E9PQ53 114 aa8.99□□□□□ -0.97
BRCA1-211ENST00000472490 ZNF22P17026 224 aaPredicted RBP8.99□□□□□ -0.97
BRCA1-211ENST00000472490 LINC00310P59036 64 aa8.99□□□□□ -0.97
BRCA1-211ENST00000472490 C11orf86A6NJI1 115 aa8.98□□□□□ -0.97
BRCA1-211ENST00000472490 ATP6V1G1O75348 118 aa8.98□□□□□ -0.97
BRCA1-211ENST00000472490 RPL37AP61513 92 aaKnown RBP8.98□□□□□ -0.97
BRCA1-211ENST00000472490 Q6ZRP5 223 aa8.98□□□□□ -0.97
BRCA1-211ENST00000472490 NUPR1O60356 82 aa8.97□□□□□ -0.97
BRCA1-211ENST00000472490 INAFM2P0DMQ5 153 aa8.97□□□□□ -0.97
BRCA1-211ENST00000472490 SFTA2Q6UW10 78 aa8.97□□□□□ -0.97
BRCA1-211ENST00000472490 IGLV5-39A0A0G2JS06 123 aa8.96□□□□□ -0.98
BRCA1-211ENST00000472490 H0Y8G0 127 aa8.96□□□□□ -0.98
BRCA1-211ENST00000472490 FABP4P15090 132 aa8.96□□□□□ -0.98
BRCA1-211ENST00000472490 GAGE2EQ4V326 116 aa8.96□□□□□ -0.98
BRCA1-211ENST00000472490 MAP1LC3CQ9BXW4 147 aa8.96□□□□□ -0.98
BRCA1-211ENST00000472490 GAGE2DQ9UEU5 116 aa8.96□□□□□ -0.98
BRCA1-211ENST00000472490 A6NJY4 79 aa8.95□□□□□ -0.98
BRCA1-211ENST00000472490 PLNP26678 52 aa8.95□□□□□ -0.98
BRCA1-211ENST00000472490 C9orf116Q5BN46 136 aaPredicted RBP8.95□□□□□ -0.98
BRCA1-211ENST00000472490 A0A1W2PNN7 141 aa8.93□□□□□ -0.98
BRCA1-211ENST00000472490 ODF1Q14990 250 aa8.93□□□□□ -0.98
BRCA1-211ENST00000472490 TMEM223A0PJW6 202 aa8.92□□□□□ -0.98
BRCA1-211ENST00000472490 COA6Q5JTJ3 125 aaKnown RBP8.91□□□□□ -0.98
BRCA1-211ENST00000472490 DNAH8Q96JB1 4490 aa8.9□□□□□ -0.98
BRCA1-211ENST00000472490 DPM2O94777 84 aa8.9□□□□□ -0.98
BRCA1-211ENST00000472490 COX17Q14061 63 aa8.9□□□□□ -0.98
BRCA1-211ENST00000472490 KRTAP10-4P60372 401 aaPredicted RBP8.89□□□□□ -0.99
BRCA1-211ENST00000472490 HERVK_113P61574 105 aa8.89□□□□□ -0.99
BRCA1-211ENST00000472490 SYS1-DBNDD2H3BUS1 97 aa8.88□□□□□ -0.99
BRCA1-211ENST00000472490 IGKCP01834 107 aa8.88□□□□□ -0.99
BRCA1-211ENST00000472490 C9orf129Q5T035 196 aaKnown RBP8.88□□□□□ -0.99
BRCA1-211ENST00000472490 FAM19A5Q7Z5A7 132 aaPredicted RBP8.88□□□□□ -0.99
BRCA1-211ENST00000472490 XAGE1AQ9HD64 81 aa8.87□□□□□ -0.99
BRCA1-211ENST00000472490 ERG28Q9UKR5 140 aa8.87□□□□□ -0.99
BRCA1-211ENST00000472490 FAM168BA1KXE4 195 aa8.86□□□□□ -0.99
BRCA1-211ENST00000472490 LINC00587B1AMM8 73 aa8.86□□□□□ -0.99
BRCA1-211ENST00000472490 M0QXV9 152 aa8.86□□□□□ -0.99
BRCA1-211ENST00000472490 PFN2P35080 140 aa8.86□□□□□ -0.99
BRCA1-211ENST00000472490 HERV-K104P63124 156 aa8.86□□□□□ -0.99
BRCA1-211ENST00000472490 PRR3P79522 188 aaKnown RBP8.86□□□□□ -0.99
BRCA1-211ENST00000472490 ZNF625Q96I27 306 aaPredicted RBP8.86□□□□□ -0.99
BRCA1-211ENST00000472490 PMCHL2Q9BQD1 86 aa8.86□□□□□ -0.99
BRCA1-211ENST00000472490 PET117Q6UWS5 81 aa8.85□□□□□ -0.99
BRCA1-211ENST00000472490 PHF5AQ7RTV0 110 aaKnown RBP8.85□□□□□ -0.99
BRCA1-211ENST00000472490 PLEKHB2Q96CS7 222 aa8.85□□□□□ -0.99
BRCA1-211ENST00000472490 FAT1Q14517 4588 aa8.85□□□□□ -0.99
BRCA1-211ENST00000472490 MYMXA0A1B0GTQ4 84 aa8.84□□□□□ -0.99
BRCA1-211ENST00000472490 LBHQ53QV2 105 aaPredicted RBP8.84□□□□□ -0.99
BRCA1-211ENST00000472490 LEPROTO15243 131 aa8.83□□□□□ -1
BRCA1-211ENST00000472490 UBE2BP63146 152 aa8.83□□□□□ -1
BRCA1-211ENST00000472490 NDUFA12Q9UI09 145 aa8.83□□□□□ -1
BRCA1-211ENST00000472490 PLA2G2DQ9UNK4 145 aa8.83□□□□□ -1
BRCA1-211ENST00000472490 PCLOQ9Y6V0 5065 aa8.83□□□□□ -1
BRCA1-211ENST00000472490 S100A6P06703 90 aa8.82□□□□□ -1
BRCA1-211ENST00000472490 LINC00158P58513 81 aa8.82□□□□□ -1
BRCA1-211ENST00000472490 LINC01545Q5VT33 79 aa8.82□□□□□ -1
BRCA1-211ENST00000472490 TP73-AS1Q9UF72 201 aa8.82□□□□□ -1
BRCA1-211ENST00000472490 C22orf24Q9Y442 160 aa8.82□□□□□ -1
BRCA1-211ENST00000472490 C20orf202A1L168 122 aa8.81□□□□□ -1
BRCA1-211ENST00000472490 J3QQQ9 107 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms