RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 XCL1P47992 114 aa3.93□□□□□ -1.78
SYNE1-219ENST00000469439 Q6ZVH6 145 aa3.93□□□□□ -1.78
SYNE1-219ENST00000469439 Q8IZM0 81 aa3.93□□□□□ -1.78
SYNE1-219ENST00000469439 DEFB104AQ8WTQ1 72 aa3.93□□□□□ -1.78
SYNE1-219ENST00000469439 NACAE9PAV3 2078 aa3.93□□□□□ -1.78
SYNE1-219ENST00000469439 IGHV3OR16-9A0A0B4J2B5 98 aa3.92□□□□□ -1.78
SYNE1-219ENST00000469439 DLEU1O43261 78 aa3.92□□□□□ -1.78
SYNE1-219ENST00000469439 ZNF22P17026 224 aaPredicted RBP3.92□□□□□ -1.78
SYNE1-219ENST00000469439 PYY3Q5JQD4 70 aa3.92□□□□□ -1.78
SYNE1-219ENST00000469439 SLC25A34Q6PIV7 304 aa3.92□□□□□ -1.78
SYNE1-219ENST00000469439 SCGB1D4Q6XE38 83 aa3.92□□□□□ -1.78
SYNE1-219ENST00000469439 LINC00173Q6ZV60 143 aa3.92□□□□□ -1.78
SYNE1-219ENST00000469439 C12orf57Q99622 126 aa3.92□□□□□ -1.78
SYNE1-219ENST00000469439 UQCR10Q9UDW1 63 aa3.92□□□□□ -1.78
SYNE1-219ENST00000469439 IGLV4-69A0A075B6H9 119 aa3.91□□□□□ -1.78
SYNE1-219ENST00000469439 IGHV3-64A0A075B6Q5 118 aa3.91□□□□□ -1.78
SYNE1-219ENST00000469439 TMEM223A0PJW6 202 aa3.91□□□□□ -1.78
SYNE1-219ENST00000469439 TMEM238C9JI98 176 aa3.91□□□□□ -1.78
SYNE1-219ENST00000469439 J3QQQ9 107 aa3.91□□□□□ -1.78
SYNE1-219ENST00000469439 COX17Q14061 63 aa3.91□□□□□ -1.78
SYNE1-219ENST00000469439 SPATA45Q537H7 98 aa3.91□□□□□ -1.78
SYNE1-219ENST00000469439 C1orf134Q5TEV5 83 aa3.91□□□□□ -1.78
SYNE1-219ENST00000469439 ENHOQ6UWT2 76 aa3.91□□□□□ -1.78
SYNE1-219ENST00000469439 C6orf223Q8N319 242 aa3.91□□□□□ -1.78
SYNE1-219ENST00000469439 COX7B2Q8TF08 81 aa3.91□□□□□ -1.78
SYNE1-219ENST00000469439 C2orf48Q96LS8 159 aa3.91□□□□□ -1.78
SYNE1-219ENST00000469439 OPRPNQ99935 248 aaPredicted RBP3.91□□□□□ -1.78
SYNE1-219ENST00000469439 Q9HAA7 133 aa3.91□□□□□ -1.78
SYNE1-219ENST00000469439 CDKN2A-AS1Q9UH64 79 aa3.91□□□□□ -1.78
SYNE1-219ENST00000469439 CBY1Q9Y3M2 126 aa3.91□□□□□ -1.78
SYNE1-219ENST00000469439 A0A0A0MQY5 61 aa3.9□□□□□ -1.79
SYNE1-219ENST00000469439 NDUFA1O15239 70 aa3.9□□□□□ -1.79
SYNE1-219ENST00000469439 COX8AP10176 69 aa3.9□□□□□ -1.79
SYNE1-219ENST00000469439 RNASE13Q5GAN3 156 aaKnown RBP3.9□□□□□ -1.79
SYNE1-219ENST00000469439 CLPSL2Q6UWE3 100 aa3.9□□□□□ -1.79
SYNE1-219ENST00000469439 C5orf38Q86SI9 138 aa3.9□□□□□ -1.79
SYNE1-219ENST00000469439 LINC00518Q8N0U6 118 aa3.9□□□□□ -1.79
SYNE1-219ENST00000469439 ORAOV1Q8WV07 137 aa3.9□□□□□ -1.79
SYNE1-219ENST00000469439 MIEN1Q9BRT3 115 aa3.9□□□□□ -1.79
SYNE1-219ENST00000469439 NDUFA12Q9UI09 145 aa3.9□□□□□ -1.79
SYNE1-219ENST00000469439 PAM16Q9Y3D7 125 aa3.9□□□□□ -1.79
SYNE1-219ENST00000469439 IGLV10-54A0A075B6I4 117 aa3.89□□□□□ -1.79
SYNE1-219ENST00000469439 A0A0J9YXY3 114 aa3.89□□□□□ -1.79
SYNE1-219ENST00000469439 TRBV30A0A0K0K1B3 111 aa3.89□□□□□ -1.79
SYNE1-219ENST00000469439 ZNF815PA8K554 130 aa3.89□□□□□ -1.79
SYNE1-219ENST00000469439 SMIM1B2RUZ4 78 aa3.89□□□□□ -1.79
SYNE1-219ENST00000469439 TIMM17BO60830 172 aa3.89□□□□□ -1.79
SYNE1-219ENST00000469439 IFITM1P13164 125 aa3.89□□□□□ -1.79
SYNE1-219ENST00000469439 SPAG11BQ08648 103 aa3.89□□□□□ -1.79
SYNE1-219ENST00000469439 TAL2Q16559 108 aa3.89□□□□□ -1.79
SYNE1-219ENST00000469439 LCE1EQ5T753 118 aa3.89□□□□□ -1.79
SYNE1-219ENST00000469439 LINC00336Q6ZUF6 198 aa3.89□□□□□ -1.79
SYNE1-219ENST00000469439 ATOH7Q8N100 152 aa3.89□□□□□ -1.79
SYNE1-219ENST00000469439 TOMM7Q9P0U1 55 aa3.89□□□□□ -1.79
SYNE1-219ENST00000469439 LINC00474Q9P2X8 69 aa3.89□□□□□ -1.79
SYNE1-219ENST00000469439 DNHD1Q96M86 4753 aa3.89□□□□□ -1.79
SYNE1-219ENST00000469439 GVQW2A0A096LPI5 108 aaPredicted RBP3.88□□□□□ -1.79
SYNE1-219ENST00000469439 M0R143 59 aa3.88□□□□□ -1.79
SYNE1-219ENST00000469439 SPINK8P0C7L1 97 aa3.88□□□□□ -1.79
SYNE1-219ENST00000469439 SRSF9Q13242 221 aaKnown RBP eCLIP3.88□□□□□ -1.79
SYNE1-219ENST00000469439 MEIG1Q5JSS6 88 aa3.88□□□□□ -1.79
SYNE1-219ENST00000469439 STPG4Q8N801 248 aa3.88□□□□□ -1.79
SYNE1-219ENST00000469439 CAMK2N2Q96S95 79 aa3.88□□□□□ -1.79
SYNE1-219ENST00000469439 PPDPFQ9H3Y8 114 aa3.88□□□□□ -1.79
SYNE1-219ENST00000469439 HIGD1BQ9P298 99 aa3.88□□□□□ -1.79
SYNE1-219ENST00000469439 LCE6AA0A183 80 aa3.87□□□□□ -1.79
SYNE1-219ENST00000469439 hDV102S1A0JD36 115 aa3.87□□□□□ -1.79
SYNE1-219ENST00000469439 HNRNPA3P51991 378 aaKnown RBP3.87□□□□□ -1.79
SYNE1-219ENST00000469439 RPL24P83731 157 aaKnown RBP3.87□□□□□ -1.79
SYNE1-219ENST00000469439 COX6A2Q02221 97 aa3.87□□□□□ -1.79
SYNE1-219ENST00000469439 SYCNQ0VAF6 134 aa3.87□□□□□ -1.79
SYNE1-219ENST00000469439 FAM104AQ969W3 186 aa3.87□□□□□ -1.79
SYNE1-219ENST00000469439 USP17L23D6RBM5 183 aa3.86□□□□□ -1.79
SYNE1-219ENST00000469439 Q6ZR54 194 aa3.86□□□□□ -1.79
SYNE1-219ENST00000469439 CARD19Q96LW7 228 aa3.86□□□□□ -1.79
SYNE1-219ENST00000469439 HIST1H4GQ99525 98 aa3.86□□□□□ -1.79
SYNE1-219ENST00000469439 SPANXB1Q9NS25 103 aaPredicted RBP3.86□□□□□ -1.79
SYNE1-219ENST00000469439 STAB2Q8WWQ8 2551 aa3.86□□□□□ -1.79
SYNE1-219ENST00000469439 MEGF8Q7Z7M0 2845 aa3.85□□□□□ -1.79
SYNE1-219ENST00000469439 DNAH3Q8TD57 4116 aa3.85□□□□□ -1.79
SYNE1-219ENST00000469439 LINC00158P58513 81 aa3.85□□□□□ -1.79
SYNE1-219ENST00000469439 CNBPP62633 177 aaKnown RBP3.85□□□□□ -1.79
SYNE1-219ENST00000469439 C14orf144Q96I85 54 aa3.85□□□□□ -1.79
SYNE1-219ENST00000469439 LOC107984640A0A0U1RRK4 108 aa3.84□□□□□ -1.79
SYNE1-219ENST00000469439 A6NDN8 102 aa3.84□□□□□ -1.79
SYNE1-219ENST00000469439 NDUFC2-KCTD14E9PQ53 114 aa3.84□□□□□ -1.79
SYNE1-219ENST00000469439 M0R2N4 97 aa3.84□□□□□ -1.79
SYNE1-219ENST00000469439 SNCGO76070 127 aa3.84□□□□□ -1.79
SYNE1-219ENST00000469439 MT3P25713 68 aa3.84□□□□□ -1.79
SYNE1-219ENST00000469439 HSD52Q0P140 79 aa3.84□□□□□ -1.79
SYNE1-219ENST00000469439 KRTAP26-1Q6PEX3 210 aa3.84□□□□□ -1.79
SYNE1-219ENST00000469439 ZNF625Q96I27 306 aaPredicted RBP3.84□□□□□ -1.79
SYNE1-219ENST00000469439 SPANXDQ9BXN6 97 aa3.84□□□□□ -1.79
SYNE1-219ENST00000469439 SPANXCQ9NY87 97 aa3.84□□□□□ -1.79
SYNE1-219ENST00000469439 TP73-AS1Q9UF72 201 aa3.84□□□□□ -1.79
SYNE1-219ENST00000469439 ERG28Q9UKR5 140 aa3.84□□□□□ -1.79
SYNE1-219ENST00000469439 TLX1NBP0CAT3 122 aa3.83□□□□□ -1.8
SYNE1-219ENST00000469439 DDTP30046 118 aa3.83□□□□□ -1.8
SYNE1-219ENST00000469439 KIAA0087Q14695 138 aa3.83□□□□□ -1.8
SYNE1-219ENST00000469439 LBHQ53QV2 105 aaPredicted RBP3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms