RNA–Protein interactions for RNA: ENST00000465941.1

HOXA9-203, Transcript of homeobox A9, humanhuman

TSL 1 (best)

Gene HOXA9, Length 657 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-203ENST00000465941 CIRBP-AS1Q8TBR5 109 aa11.74□□□□□ -0.53
HOXA9-203ENST00000465941 LOC107984640A0A0U1RRK4 108 aa11.73□□□□□ -0.53
HOXA9-203ENST00000465941 CKS1BP61024 79 aa11.73□□□□□ -0.53
HOXA9-203ENST00000465941 SPACA4Q8TDM5 124 aa11.73□□□□□ -0.53
HOXA9-203ENST00000465941 TRBV30A0A0K0K1B3 111 aa11.72□□□□□ -0.53
HOXA9-203ENST00000465941 CHTF8P0CG12 524 aa11.72□□□□□ -0.53
HOXA9-203ENST00000465941 ODF1Q14990 250 aa11.72□□□□□ -0.53
HOXA9-203ENST00000465941 TMEM170BQ5T4T1 132 aa11.72□□□□□ -0.53
HOXA9-203ENST00000465941 Q8N1X5 172 aa11.72□□□□□ -0.53
HOXA9-203ENST00000465941 LINC00474Q9P2X8 69 aa11.72□□□□□ -0.53
HOXA9-203ENST00000465941 C6orf48Q9UBA6 75 aa11.72□□□□□ -0.53
HOXA9-203ENST00000465941 PCLOQ9Y6V0 5065 aa11.71□□□□□ -0.53
HOXA9-203ENST00000465941 A0A096LNI7 61 aa11.71□□□□□ -0.53
HOXA9-203ENST00000465941 IGLV5-39A0A0G2JS06 123 aa11.71□□□□□ -0.53
HOXA9-203ENST00000465941 COX7B2Q8TF08 81 aa11.71□□□□□ -0.53
HOXA9-203ENST00000465941 MAP1LC3CQ9BXW4 147 aa11.71□□□□□ -0.53
HOXA9-203ENST00000465941 RYR1P21817 5038 aa11.71□□□□□ -0.53
HOXA9-203ENST00000465941 H0Y8G0 127 aa11.7□□□□□ -0.54
HOXA9-203ENST00000465941 CXCL5P42830 114 aa11.7□□□□□ -0.54
HOXA9-203ENST00000465941 DPH3Q96FX2 82 aa11.7□□□□□ -0.54
HOXA9-203ENST00000465941 DNAH8Q96JB1 4490 aa11.7□□□□□ -0.54
HOXA9-203ENST00000465941 HSPG2P98160 4391 aa11.69□□□□□ -0.54
HOXA9-203ENST00000465941 IGKV2-24A0A0C4DH68 120 aa11.69□□□□□ -0.54
HOXA9-203ENST00000465941 TLX1NBP0CAT3 122 aa11.69□□□□□ -0.54
HOXA9-203ENST00000465941 PTTG1IPP53801 180 aa11.69□□□□□ -0.54
HOXA9-203ENST00000465941 SMR3BP02814 79 aaPredicted RBP11.68□□□□□ -0.54
HOXA9-203ENST00000465941 MAJINQ3KP22 176 aa11.68□□□□□ -0.54
HOXA9-203ENST00000465941 A0A087WYN8 130 aa11.67□□□□□ -0.54
HOXA9-203ENST00000465941 GAGE2BQ13066 116 aa11.67□□□□□ -0.54
HOXA9-203ENST00000465941 PLAC8Q9NZF1 115 aa11.67□□□□□ -0.54
HOXA9-203ENST00000465941 TMEM223A0PJW6 202 aa11.66□□□□□ -0.54
HOXA9-203ENST00000465941 PLNP26678 52 aa11.66□□□□□ -0.54
HOXA9-203ENST00000465941 RPL18AQ02543 176 aaKnown RBP11.66□□□□□ -0.54
HOXA9-203ENST00000465941 NDUFC2-KCTD14E9PQ53 114 aa11.65□□□□□ -0.54
HOXA9-203ENST00000465941 SYS1-DBNDD2H3BUS1 97 aa11.65□□□□□ -0.54
HOXA9-203ENST00000465941 C9orf116Q5BN46 136 aaPredicted RBP11.65□□□□□ -0.54
HOXA9-203ENST00000465941 Q6ZRP5 223 aa11.65□□□□□ -0.54
HOXA9-203ENST00000465941 DPM2O94777 84 aa11.64□□□□□ -0.55
HOXA9-203ENST00000465941 STPG4Q8N801 248 aa11.64□□□□□ -0.55
HOXA9-203ENST00000465941 FAM229AH3BQW9 127 aa11.63□□□□□ -0.55
HOXA9-203ENST00000465941 EPM2AB3EWF7 344 aa11.62□□□□□ -0.55
HOXA9-203ENST00000465941 PMCHL2Q9BQD1 86 aa11.62□□□□□ -0.55
HOXA9-203ENST00000465941 IGKCP01834 107 aa11.61□□□□□ -0.55
HOXA9-203ENST00000465941 SFTA2Q6UW10 78 aa11.61□□□□□ -0.55
HOXA9-203ENST00000465941 PET117Q6UWS5 81 aa11.61□□□□□ -0.55
HOXA9-203ENST00000465941 LINC00528Q8N1L1 170 aa11.61□□□□□ -0.55
HOXA9-203ENST00000465941 C3orf79P0CE67 100 aa11.6□□□□□ -0.55
HOXA9-203ENST00000465941 GAGE2EQ4V326 116 aa11.6□□□□□ -0.55
HOXA9-203ENST00000465941 Q5VSD8 79 aa11.6□□□□□ -0.55
HOXA9-203ENST00000465941 LINC01545Q5VT33 79 aa11.6□□□□□ -0.55
HOXA9-203ENST00000465941 KRTAP4-5Q9BYR2 181 aa11.6□□□□□ -0.55
HOXA9-203ENST00000465941 GAGE2DQ9UEU5 116 aa11.6□□□□□ -0.55
HOXA9-203ENST00000465941 A0A1W2PNN7 141 aa11.58□□□□□ -0.56
HOXA9-203ENST00000465941 S100A6P06703 90 aa11.58□□□□□ -0.56
HOXA9-203ENST00000465941 HIST3H2BBQ8N257 126 aa11.58□□□□□ -0.56
HOXA9-203ENST00000465941 ZNF625Q96I27 306 aaPredicted RBP11.58□□□□□ -0.56
HOXA9-203ENST00000465941 KRTDAPP60985 99 aa11.57□□□□□ -0.56
HOXA9-203ENST00000465941 PLA2G1BP04054 148 aaKnown RBP11.56□□□□□ -0.56
HOXA9-203ENST00000465941 HERVK_113P61574 105 aa11.55□□□□□ -0.56
HOXA9-203ENST00000465941 C9orf129Q5T035 196 aaKnown RBP11.55□□□□□ -0.56
HOXA9-203ENST00000465941 LEPROTO15243 131 aa11.54□□□□□ -0.56
HOXA9-203ENST00000465941 S100A2P29034 98 aa11.54□□□□□ -0.56
HOXA9-203ENST00000465941 COX17Q14061 63 aa11.54□□□□□ -0.56
HOXA9-203ENST00000465941 PLEKHB2Q96CS7 222 aa11.54□□□□□ -0.56
HOXA9-203ENST00000465941 HIST1H2BLQ99880 126 aa11.54□□□□□ -0.56
HOXA9-203ENST00000465941 C7orf33Q8WU49 177 aa11.53□□□□□ -0.56
HOXA9-203ENST00000465941 ERG28Q9UKR5 140 aa11.53□□□□□ -0.56
HOXA9-203ENST00000465941 FAM168BA1KXE4 195 aa11.52□□□□□ -0.57
HOXA9-203ENST00000465941 SNRPEP62304 92 aaKnown RBP11.52□□□□□ -0.57
HOXA9-203ENST00000465941 XAGE1AQ9HD64 81 aa11.52□□□□□ -0.57
HOXA9-203ENST00000465941 FAT1Q14517 4588 aa11.52□□□□□ -0.57
HOXA9-203ENST00000465941 J3QQQ9 107 aa11.51□□□□□ -0.57
HOXA9-203ENST00000465941 PFN2P35080 140 aa11.51□□□□□ -0.57
HOXA9-203ENST00000465941 KRTAP10-4P60372 401 aaPredicted RBP11.51□□□□□ -0.57
HOXA9-203ENST00000465941 HERV-K104P63124 156 aa11.51□□□□□ -0.57
HOXA9-203ENST00000465941 KRTAP7-1Q8IUC3 87 aa11.51□□□□□ -0.57
HOXA9-203ENST00000465941 NDUFA12Q9UI09 145 aa11.51□□□□□ -0.57
HOXA9-203ENST00000465941 MYMXA0A1B0GTQ4 84 aa11.5□□□□□ -0.57
HOXA9-203ENST00000465941 C20orf202A1L168 122 aa11.5□□□□□ -0.57
HOXA9-203ENST00000465941 C5orf52A6NGY3 159 aa11.5□□□□□ -0.57
HOXA9-203ENST00000465941 E9PLD3 99 aa11.5□□□□□ -0.57
HOXA9-203ENST00000465941 TSPEAR-AS2P59090 65 aa11.5□□□□□ -0.57
HOXA9-203ENST00000465941 RPL37AP61513 92 aaKnown RBP11.5□□□□□ -0.57
HOXA9-203ENST00000465941 NMUP48645 174 aa11.48□□□□□ -0.57
HOXA9-203ENST00000465941 AKR1D1P51857 326 aa11.48□□□□□ -0.57
HOXA9-203ENST00000465941 FAM19A5Q7Z5A7 132 aaPredicted RBP11.48□□□□□ -0.57
HOXA9-203ENST00000465941 LINC00587B1AMM8 73 aa11.47□□□□□ -0.57
HOXA9-203ENST00000465941 LGALS3P17931 250 aaKnown RBP11.47□□□□□ -0.57
HOXA9-203ENST00000465941 PLA2G2DQ9UNK4 145 aa11.47□□□□□ -0.57
HOXA9-203ENST00000465941 LINC00158P58513 81 aa11.46□□□□□ -0.57
HOXA9-203ENST00000465941 PHF5AQ7RTV0 110 aaKnown RBP11.46□□□□□ -0.57
HOXA9-203ENST00000465941 SND1-IT1Q9HBX3 110 aa11.46□□□□□ -0.57
HOXA9-203ENST00000465941 SERTAD4-AS1Q5TG53 156 aa11.45□□□□□ -0.58
HOXA9-203ENST00000465941 SRRM2Q9UQ35 2752 aaKnown RBP11.44□□□□□ -0.58
HOXA9-203ENST00000465941 M0QXV9 152 aa11.44□□□□□ -0.58
HOXA9-203ENST00000465941 SMIM13P0DJ93 91 aa11.43□□□□□ -0.58
HOXA9-203ENST00000465941 INAFM2P0DMQ5 153 aa11.43□□□□□ -0.58
HOXA9-203ENST00000465941 MEIG1Q5JSS6 88 aa11.43□□□□□ -0.58
HOXA9-203ENST00000465941 C22orf24Q9Y442 160 aa11.43□□□□□ -0.58
HOXA9-203ENST00000465941 PRR3P79522 188 aaKnown RBP11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms