RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 PRSS2P07478 247 aa7.38□□□□□ -1.23
CUX1-207ENST00000465461 IGLC3P0DOY3 106 aa7.38□□□□□ -1.23
CUX1-207ENST00000465461 HIST1H2BOP23527 126 aa7.38□□□□□ -1.23
CUX1-207ENST00000465461 HIST1H2BBP33778 126 aa7.38□□□□□ -1.23
CUX1-207ENST00000465461 HIST1H2BDP58876 126 aa7.38□□□□□ -1.23
CUX1-207ENST00000465461 HIST1H2BCP62807 126 aa7.38□□□□□ -1.23
CUX1-207ENST00000465461 RPL18AQ02543 176 aaKnown RBP7.38□□□□□ -1.23
CUX1-207ENST00000465461 HIST2H2BEQ16778 126 aa7.38□□□□□ -1.23
CUX1-207ENST00000465461 C9orf116Q5BN46 136 aaPredicted RBP7.38□□□□□ -1.23
CUX1-207ENST00000465461 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.38□□□□□ -1.23
CUX1-207ENST00000465461 STPG4Q8N801 248 aa7.38□□□□□ -1.23
CUX1-207ENST00000465461 HIST1H2BHQ93079 126 aa7.38□□□□□ -1.23
CUX1-207ENST00000465461 HIST1H2BNQ99877 126 aa7.38□□□□□ -1.23
CUX1-207ENST00000465461 HIST1H2BMQ99879 126 aa7.38□□□□□ -1.23
CUX1-207ENST00000465461 MRPL35Q9NZE8 188 aaKnown RBP7.38□□□□□ -1.23
CUX1-207ENST00000465461 FAT1Q14517 4588 aa7.38□□□□□ -1.23
CUX1-207ENST00000465461 C11orf86A6NJI1 115 aa7.37□□□□□ -1.23
CUX1-207ENST00000465461 H0Y8G0 127 aa7.37□□□□□ -1.23
CUX1-207ENST00000465461 PTTG1IPP53801 180 aa7.37□□□□□ -1.23
CUX1-207ENST00000465461 C6orf226Q5I0X4 101 aa7.37□□□□□ -1.23
CUX1-207ENST00000465461 CHTOPQ9Y3Y2 248 aaKnown RBP7.37□□□□□ -1.23
CUX1-207ENST00000465461 FABP4P15090 132 aa7.36□□□□□ -1.23
CUX1-207ENST00000465461 ZNF22P17026 224 aaPredicted RBP7.36□□□□□ -1.23
CUX1-207ENST00000465461 CKS1BP61024 79 aa7.36□□□□□ -1.23
CUX1-207ENST00000465461 RNF151Q2KHN1 245 aa7.36□□□□□ -1.23
CUX1-207ENST00000465461 Q8IZM0 81 aa7.36□□□□□ -1.23
CUX1-207ENST00000465461 PLAC8Q9NZF1 115 aa7.36□□□□□ -1.23
CUX1-207ENST00000465461 A0A1W2PNN7 141 aa7.35□□□□□ -1.23
CUX1-207ENST00000465461 F8WDY8 70 aa7.35□□□□□ -1.23
CUX1-207ENST00000465461 LEPROTL1O95214 131 aa7.35□□□□□ -1.23
CUX1-207ENST00000465461 GAGE2EQ4V326 116 aa7.35□□□□□ -1.23
CUX1-207ENST00000465461 Q6ZRP5 223 aa7.35□□□□□ -1.23
CUX1-207ENST00000465461 COX7B2Q8TF08 81 aa7.35□□□□□ -1.23
CUX1-207ENST00000465461 GAGE2DQ9UEU5 116 aa7.35□□□□□ -1.23
CUX1-207ENST00000465461 INAFM2P0DMQ5 153 aa7.34□□□□□ -1.23
CUX1-207ENST00000465461 TMEM170BQ5T4T1 132 aa7.34□□□□□ -1.23
CUX1-207ENST00000465461 ABCA13Q86UQ4 5058 aa7.34□□□□□ -1.23
CUX1-207ENST00000465461 TRAV12-1A0A0B4J245 112 aa7.33□□□□□ -1.24
CUX1-207ENST00000465461 TRBV30A0A0K0K1B3 111 aa7.33□□□□□ -1.24
CUX1-207ENST00000465461 FAM168BA1KXE4 195 aa7.33□□□□□ -1.24
CUX1-207ENST00000465461 H3BRM9 83 aa7.33□□□□□ -1.24
CUX1-207ENST00000465461 PLA2G1BP04054 148 aaKnown RBP7.33□□□□□ -1.24
CUX1-207ENST00000465461 KRTAP10-4P60372 401 aaPredicted RBP7.33□□□□□ -1.24
CUX1-207ENST00000465461 LINC00474Q9P2X8 69 aa7.33□□□□□ -1.24
CUX1-207ENST00000465461 TLX1NBP0CAT3 122 aa7.32□□□□□ -1.24
CUX1-207ENST00000465461 RPL37AP61513 92 aaKnown RBP7.32□□□□□ -1.24
CUX1-207ENST00000465461 LCE2CQ5TA81 110 aa7.32□□□□□ -1.24
CUX1-207ENST00000465461 PMCHL2Q9BQD1 86 aa7.32□□□□□ -1.24
CUX1-207ENST00000465461 PKIGQ9Y2B9 76 aa7.32□□□□□ -1.24
CUX1-207ENST00000465461 F8VRH5 84 aa7.31□□□□□ -1.24
CUX1-207ENST00000465461 ODF1Q14990 250 aa7.31□□□□□ -1.24
CUX1-207ENST00000465461 IGLV5-39A0A0G2JS06 123 aa7.3□□□□□ -1.24
CUX1-207ENST00000465461 TMEM223A0PJW6 202 aa7.3□□□□□ -1.24
CUX1-207ENST00000465461 NDUFC2-KCTD14E9PQ53 114 aa7.3□□□□□ -1.24
CUX1-207ENST00000465461 C9orf129Q5T035 196 aaKnown RBP7.3□□□□□ -1.24
CUX1-207ENST00000465461 HSPB8Q9UJY1 196 aa7.3□□□□□ -1.24
CUX1-207ENST00000465461 PCLOQ9Y6V0 5065 aa7.3□□□□□ -1.24
CUX1-207ENST00000465461 CXCL5P42830 114 aa7.29□□□□□ -1.24
CUX1-207ENST00000465461 HNRNPA3P51991 378 aaKnown RBP7.29□□□□□ -1.24
CUX1-207ENST00000465461 PHF5AQ7RTV0 110 aaKnown RBP7.29□□□□□ -1.24
CUX1-207ENST00000465461 FAM19A5Q7Z5A7 132 aaPredicted RBP7.29□□□□□ -1.24
CUX1-207ENST00000465461 KRTAP7-1Q8IUC3 87 aa7.29□□□□□ -1.24
CUX1-207ENST00000465461 ZNF625Q96I27 306 aaPredicted RBP7.29□□□□□ -1.24
CUX1-207ENST00000465461 XAGE1AQ9HD64 81 aa7.29□□□□□ -1.24
CUX1-207ENST00000465461 C7orf33Q8WU49 177 aa7.28□□□□□ -1.24
CUX1-207ENST00000465461 J3QL48 77 aa7.27□□□□□ -1.25
CUX1-207ENST00000465461 MAP1LC3CQ9BXW4 147 aa7.27□□□□□ -1.25
CUX1-207ENST00000465461 PFN2P35080 140 aa7.26□□□□□ -1.25
CUX1-207ENST00000465461 SERTAD4-AS1Q5TG53 156 aa7.26□□□□□ -1.25
CUX1-207ENST00000465461 KRTAP11-1Q8IUC1 163 aa7.26□□□□□ -1.25
CUX1-207ENST00000465461 COA6Q5JTJ3 125 aaKnown RBP7.25□□□□□ -1.25
CUX1-207ENST00000465461 SYS1-DBNDD2H3BUS1 97 aa7.24□□□□□ -1.25
CUX1-207ENST00000465461 DPM2O94777 84 aa7.24□□□□□ -1.25
CUX1-207ENST00000465461 IGKCP01834 107 aa7.24□□□□□ -1.25
CUX1-207ENST00000465461 PRR3P79522 188 aaKnown RBP7.24□□□□□ -1.25
CUX1-207ENST00000465461 A0A0U1RRA0 63 aa7.23□□□□□ -1.25
CUX1-207ENST00000465461 M0QXV9 152 aa7.23□□□□□ -1.25
CUX1-207ENST00000465461 TSPEAR-AS2P59090 65 aa7.23□□□□□ -1.25
CUX1-207ENST00000465461 ERG28Q9UKR5 140 aa7.23□□□□□ -1.25
CUX1-207ENST00000465461 SRRM2Q9UQ35 2752 aaKnown RBP7.23□□□□□ -1.25
CUX1-207ENST00000465461 FLG2Q5D862 2391 aaPredicted RBP7.23□□□□□ -1.25
CUX1-207ENST00000465461 VPS13BQ7Z7G8 4022 aa7.23□□□□□ -1.25
CUX1-207ENST00000465461 C3orf79P0CE67 100 aa7.22□□□□□ -1.25
CUX1-207ENST00000465461 PLNP26678 52 aa7.22□□□□□ -1.25
CUX1-207ENST00000465461 KRTDAPP60985 99 aa7.21□□□□□ -1.26
CUX1-207ENST00000465461 PSORS1C2Q9UIG4 136 aa7.21□□□□□ -1.26
CUX1-207ENST00000465461 C22orf24Q9Y442 160 aa7.21□□□□□ -1.26
CUX1-207ENST00000465461 LEPROTO15243 131 aa7.2□□□□□ -1.26
CUX1-207ENST00000465461 LINC00158P58513 81 aa7.2□□□□□ -1.26
CUX1-207ENST00000465461 SND1-IT1Q9HBX3 110 aa7.2□□□□□ -1.26
CUX1-207ENST00000465461 NDUFA12Q9UI09 145 aa7.2□□□□□ -1.26
CUX1-207ENST00000465461 SMIM13P0DJ93 91 aa7.19□□□□□ -1.26
CUX1-207ENST00000465461 UBE2BP63146 152 aa7.19□□□□□ -1.26
CUX1-207ENST00000465461 C1orf137Q5JT78 98 aa7.19□□□□□ -1.26
CUX1-207ENST00000465461 LINC01545Q5VT33 79 aa7.19□□□□□ -1.26
CUX1-207ENST00000465461 PET117Q6UWS5 81 aa7.19□□□□□ -1.26
CUX1-207ENST00000465461 GAGE10A6NGK3 116 aa7.18□□□□□ -1.26
CUX1-207ENST00000465461 J3QQQ9 107 aa7.18□□□□□ -1.26
CUX1-207ENST00000465461 LORP23490 312 aaPredicted RBP7.18□□□□□ -1.26
CUX1-207ENST00000465461 HERVK_113P61574 105 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 108.7 ms