RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 FAM229AH3BQW9 127 aa14.56□□□□□ -0.08
CCDC28B-203ENST00000461819 CKS1BP61024 79 aa14.56□□□□□ -0.08
CCDC28B-203ENST00000461819 C6orf226Q5I0X4 101 aa14.56□□□□□ -0.08
CCDC28B-203ENST00000461819 C10orf25Q5T742 122 aa14.56□□□□□ -0.08
CCDC28B-203ENST00000461819 Q5VSD8 79 aa14.56□□□□□ -0.08
CCDC28B-203ENST00000461819 C2orf82Q6UX34 121 aa14.56□□□□□ -0.08
CCDC28B-203ENST00000461819 NUPR1O60356 82 aa14.55□□□□□ -0.08
CCDC28B-203ENST00000461819 LEPROTL1O95214 131 aa14.55□□□□□ -0.08
CCDC28B-203ENST00000461819 SPINK8P0C7L1 97 aa14.55□□□□□ -0.08
CCDC28B-203ENST00000461819 RPL18AQ02543 176 aaKnown RBP14.55□□□□□ -0.08
CCDC28B-203ENST00000461819 LINC00528Q8N1L1 170 aa14.55□□□□□ -0.08
CCDC28B-203ENST00000461819 LINC00474Q9P2X8 69 aa14.55□□□□□ -0.08
CCDC28B-203ENST00000461819 CHTOPQ9Y3Y2 248 aaKnown RBP14.55□□□□□ -0.08
CCDC28B-203ENST00000461819 GAGE2BQ13066 116 aa14.54□□□□□ -0.08
CCDC28B-203ENST00000461819 KRTAP4-5Q9BYR2 181 aa14.54□□□□□ -0.08
CCDC28B-203ENST00000461819 C6orf48Q9UBA6 75 aa14.54□□□□□ -0.08
CCDC28B-203ENST00000461819 A0A087WYN8 130 aa14.53□□□□□ -0.08
CCDC28B-203ENST00000461819 TRAV12-1A0A0B4J245 112 aa14.53□□□□□ -0.08
CCDC28B-203ENST00000461819 FAT1Q14517 4588 aa14.53□□□□□ -0.08
CCDC28B-203ENST00000461819 TRBV30A0A0K0K1B3 111 aa14.52□□□□□ -0.09
CCDC28B-203ENST00000461819 ZNF22P17026 224 aaPredicted RBP14.52□□□□□ -0.09
CCDC28B-203ENST00000461819 PTTG1IPP53801 180 aa14.52□□□□□ -0.09
CCDC28B-203ENST00000461819 HSPB8Q9UJY1 196 aa14.52□□□□□ -0.09
CCDC28B-203ENST00000461819 C11orf86A6NJI1 115 aa14.51□□□□□ -0.09
CCDC28B-203ENST00000461819 H0Y8G0 127 aa14.51□□□□□ -0.09
CCDC28B-203ENST00000461819 FABP4P15090 132 aa14.51□□□□□ -0.09
CCDC28B-203ENST00000461819 COX7B2Q8TF08 81 aa14.51□□□□□ -0.09
CCDC28B-203ENST00000461819 TMEM170BQ5T4T1 132 aa14.5□□□□□ -0.09
CCDC28B-203ENST00000461819 STPG4Q8N801 248 aa14.5□□□□□ -0.09
CCDC28B-203ENST00000461819 CXCL5P42830 114 aa14.49□□□□□ -0.09
CCDC28B-203ENST00000461819 PLAC8Q9NZF1 115 aa14.49□□□□□ -0.09
CCDC28B-203ENST00000461819 ABCA13Q86UQ4 5058 aa14.49□□□□□ -0.09
CCDC28B-203ENST00000461819 VPS13BQ7Z7G8 4022 aa14.48□□□□□ -0.09
CCDC28B-203ENST00000461819 F8VRH5 84 aa14.48□□□□□ -0.09
CCDC28B-203ENST00000461819 PCLOQ9Y6V0 5065 aa14.47□□□□□ -0.09
CCDC28B-203ENST00000461819 PLA2G1BP04054 148 aaKnown RBP14.46□□□□□ -0.09
CCDC28B-203ENST00000461819 TLX1NBP0CAT3 122 aa14.46□□□□□ -0.09
CCDC28B-203ENST00000461819 C9orf116Q5BN46 136 aaPredicted RBP14.45□□□□□ -0.1
CCDC28B-203ENST00000461819 IGLV5-39A0A0G2JS06 123 aa14.44□□□□□ -0.1
CCDC28B-203ENST00000461819 Q6ZRP5 223 aa14.44□□□□□ -0.1
CCDC28B-203ENST00000461819 NDUFC2-KCTD14E9PQ53 114 aa14.43□□□□□ -0.1
CCDC28B-203ENST00000461819 ODF1Q14990 250 aa14.43□□□□□ -0.1
CCDC28B-203ENST00000461819 GAGE2EQ4V326 116 aa14.43□□□□□ -0.1
CCDC28B-203ENST00000461819 GAGE2DQ9UEU5 116 aa14.43□□□□□ -0.1
CCDC28B-203ENST00000461819 MAP1LC3CQ9BXW4 147 aa14.42□□□□□ -0.1
CCDC28B-203ENST00000461819 RPL37AP61513 92 aaKnown RBP14.4□□□□□ -0.1
CCDC28B-203ENST00000461819 C7orf33Q8WU49 177 aa14.4□□□□□ -0.1
CCDC28B-203ENST00000461819 COA6Q5JTJ3 125 aaKnown RBP14.39□□□□□ -0.11
CCDC28B-203ENST00000461819 TMEM223A0PJW6 202 aa14.38□□□□□ -0.11
CCDC28B-203ENST00000461819 PLNP26678 52 aa14.38□□□□□ -0.11
CCDC28B-203ENST00000461819 A0A1W2PNN7 141 aa14.36□□□□□ -0.11
CCDC28B-203ENST00000461819 INAFM2P0DMQ5 153 aa14.36□□□□□ -0.11
CCDC28B-203ENST00000461819 PMCHL2Q9BQD1 86 aa14.36□□□□□ -0.11
CCDC28B-203ENST00000461819 SRRM2Q9UQ35 2752 aaKnown RBP14.36□□□□□ -0.11
CCDC28B-203ENST00000461819 DPM2O94777 84 aa14.35□□□□□ -0.11
CCDC28B-203ENST00000461819 FAM168BA1KXE4 195 aa14.33□□□□□ -0.12
CCDC28B-203ENST00000461819 SFTA2Q6UW10 78 aa14.33□□□□□ -0.12
CCDC28B-203ENST00000461819 FAM19A5Q7Z5A7 132 aaPredicted RBP14.33□□□□□ -0.12
CCDC28B-203ENST00000461819 SYS1-DBNDD2H3BUS1 97 aa14.32□□□□□ -0.12
CCDC28B-203ENST00000461819 IGKCP01834 107 aa14.32□□□□□ -0.12
CCDC28B-203ENST00000461819 C9orf129Q5T035 196 aaKnown RBP14.32□□□□□ -0.12
CCDC28B-203ENST00000461819 XAGE1AQ9HD64 81 aa14.31□□□□□ -0.12
CCDC28B-203ENST00000461819 KRTAP10-4P60372 401 aaPredicted RBP14.3□□□□□ -0.12
CCDC28B-203ENST00000461819 PFN2P35080 140 aa14.29□□□□□ -0.12
CCDC28B-203ENST00000461819 HERVK_113P61574 105 aa14.29□□□□□ -0.12
CCDC28B-203ENST00000461819 ZNF625Q96I27 306 aaPredicted RBP14.29□□□□□ -0.12
CCDC28B-203ENST00000461819 ERG28Q9UKR5 140 aa14.28□□□□□ -0.12
CCDC28B-203ENST00000461819 PET117Q6UWS5 81 aa14.27□□□□□ -0.13
CCDC28B-203ENST00000461819 PHF5AQ7RTV0 110 aaKnown RBP14.27□□□□□ -0.13
CCDC28B-203ENST00000461819 KRTDAPP60985 99 aa14.26□□□□□ -0.13
CCDC28B-203ENST00000461819 M0QXV9 152 aa14.25□□□□□ -0.13
CCDC28B-203ENST00000461819 C3orf79P0CE67 100 aa14.25□□□□□ -0.13
CCDC28B-203ENST00000461819 PRR3P79522 188 aaKnown RBP14.24□□□□□ -0.13
CCDC28B-203ENST00000461819 COX17Q14061 63 aa14.24□□□□□ -0.13
CCDC28B-203ENST00000461819 LINC01545Q5VT33 79 aa14.24□□□□□ -0.13
CCDC28B-203ENST00000461819 PLEKHB2Q96CS7 222 aa14.24□□□□□ -0.13
CCDC28B-203ENST00000461819 PKHD1L1Q86WI1 4243 aa14.23□□□□□ -0.13
CCDC28B-203ENST00000461819 LEPROTO15243 131 aa14.23□□□□□ -0.13
CCDC28B-203ENST00000461819 S100A6P06703 90 aa14.23□□□□□ -0.13
CCDC28B-203ENST00000461819 KRTAP7-1Q8IUC3 87 aa14.23□□□□□ -0.13
CCDC28B-203ENST00000461819 SERTAD4-AS1Q5TG53 156 aa14.22□□□□□ -0.13
CCDC28B-203ENST00000461819 NDUFA12Q9UI09 145 aa14.22□□□□□ -0.13
CCDC28B-203ENST00000461819 TSPEAR-AS2P59090 65 aa14.21□□□□□ -0.13
CCDC28B-203ENST00000461819 HERV-K104P63124 156 aa14.21□□□□□ -0.13
CCDC28B-203ENST00000461819 MYMXA0A1B0GTQ4 84 aa14.2□□□□□ -0.14
CCDC28B-203ENST00000461819 J3QQQ9 107 aa14.2□□□□□ -0.14
CCDC28B-203ENST00000461819 S100A2P29034 98 aa14.2□□□□□ -0.14
CCDC28B-203ENST00000461819 LINC00158P58513 81 aa14.2□□□□□ -0.14
CCDC28B-203ENST00000461819 MEIG1Q5JSS6 88 aa14.2□□□□□ -0.14
CCDC28B-203ENST00000461819 C20orf202A1L168 122 aa14.19□□□□□ -0.14
CCDC28B-203ENST00000461819 LGALS3P17931 250 aaKnown RBP14.19□□□□□ -0.14
CCDC28B-203ENST00000461819 UBE2BP63146 152 aa14.19□□□□□ -0.14
CCDC28B-203ENST00000461819 HNRNPA3P51991 378 aaKnown RBP14.18□□□□□ -0.14
CCDC28B-203ENST00000461819 HIST3H2BBQ8N257 126 aa14.18□□□□□ -0.14
CCDC28B-203ENST00000461819 SND1-IT1Q9HBX3 110 aa14.18□□□□□ -0.14
CCDC28B-203ENST00000461819 FLG2Q5D862 2391 aaPredicted RBP14.17□□□□□ -0.14
CCDC28B-203ENST00000461819 A0A0U1RRA0 63 aa14.17□□□□□ -0.14
CCDC28B-203ENST00000461819 C22orf24Q9Y442 160 aa14.17□□□□□ -0.14
CCDC28B-203ENST00000461819 PSORS1C2Q9UIG4 136 aa14.16□□□□□ -0.14
CCDC28B-203ENST00000461819 PLA2G2DQ9UNK4 145 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms