RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 KRTAP4-5Q9BYR2 181 aa17.8■□□□□ 0.44
SMARCC1-203ENST00000454240 CHTOPQ9Y3Y2 248 aaKnown RBP17.8■□□□□ 0.44
SMARCC1-203ENST00000454240 IGKV2-24A0A0C4DH68 120 aa17.79■□□□□ 0.44
SMARCC1-203ENST00000454240 H3BRM9 83 aa17.79■□□□□ 0.44
SMARCC1-203ENST00000454240 ZNF22P17026 224 aaPredicted RBP17.79■□□□□ 0.44
SMARCC1-203ENST00000454240 C6orf226Q5I0X4 101 aa17.79■□□□□ 0.44
SMARCC1-203ENST00000454240 C2orf82Q6UX34 121 aa17.79■□□□□ 0.44
SMARCC1-203ENST00000454240 C6orf48Q9UBA6 75 aa17.79■□□□□ 0.44
SMARCC1-203ENST00000454240 C11orf86A6NJI1 115 aa17.77■□□□□ 0.44
SMARCC1-203ENST00000454240 SPINK8P0C7L1 97 aa17.77■□□□□ 0.44
SMARCC1-203ENST00000454240 DPH3Q96FX2 82 aa17.77■□□□□ 0.44
SMARCC1-203ENST00000454240 A0A087WYN8 130 aa17.76■□□□□ 0.43
SMARCC1-203ENST00000454240 LINC00474Q9P2X8 69 aa17.76■□□□□ 0.43
SMARCC1-203ENST00000454240 HSPB8Q9UJY1 196 aa17.76■□□□□ 0.43
SMARCC1-203ENST00000454240 TRBV30A0A0K0K1B3 111 aa17.75■□□□□ 0.43
SMARCC1-203ENST00000454240 EPM2AB3EWF7 344 aa17.75■□□□□ 0.43
SMARCC1-203ENST00000454240 PTTG1IPP53801 180 aa17.75■□□□□ 0.43
SMARCC1-203ENST00000454240 CKS1BP61024 79 aa17.75■□□□□ 0.43
SMARCC1-203ENST00000454240 MAJINQ3KP22 176 aa17.75■□□□□ 0.43
SMARCC1-203ENST00000454240 FABP4P15090 132 aa17.74■□□□□ 0.43
SMARCC1-203ENST00000454240 F8VRH5 84 aa17.73■□□□□ 0.43
SMARCC1-203ENST00000454240 TLX1NBP0CAT3 122 aa17.73■□□□□ 0.43
SMARCC1-203ENST00000454240 GAGE2BQ13066 116 aa17.73■□□□□ 0.43
SMARCC1-203ENST00000454240 Q5VSD8 79 aa17.73■□□□□ 0.43
SMARCC1-203ENST00000454240 COX7B2Q8TF08 81 aa17.73■□□□□ 0.43
SMARCC1-203ENST00000454240 PLAC8Q9NZF1 115 aa17.73■□□□□ 0.43
SMARCC1-203ENST00000454240 FAM229AH3BQW9 127 aa17.72■□□□□ 0.43
SMARCC1-203ENST00000454240 COA6Q5JTJ3 125 aaKnown RBP17.72■□□□□ 0.43
SMARCC1-203ENST00000454240 LINC00528Q8N1L1 170 aa17.72■□□□□ 0.43
SMARCC1-203ENST00000454240 IGLV5-39A0A0G2JS06 123 aa17.71■□□□□ 0.43
SMARCC1-203ENST00000454240 CXCL5P42830 114 aa17.71■□□□□ 0.43
SMARCC1-203ENST00000454240 RPL18AQ02543 176 aaKnown RBP17.7■□□□□ 0.42
SMARCC1-203ENST00000454240 ODF1Q14990 250 aa17.7■□□□□ 0.42
SMARCC1-203ENST00000454240 TMEM170BQ5T4T1 132 aa17.7■□□□□ 0.42
SMARCC1-203ENST00000454240 STPG4Q8N801 248 aa17.7■□□□□ 0.42
SMARCC1-203ENST00000454240 VPS13BQ7Z7G8 4022 aa17.69■□□□□ 0.42
SMARCC1-203ENST00000454240 H0Y8G0 127 aa17.68■□□□□ 0.42
SMARCC1-203ENST00000454240 Q6ZRP5 223 aa17.68■□□□□ 0.42
SMARCC1-203ENST00000454240 C9orf116Q5BN46 136 aaPredicted RBP17.67■□□□□ 0.42
SMARCC1-203ENST00000454240 NDUFC2-KCTD14E9PQ53 114 aa17.65■□□□□ 0.42
SMARCC1-203ENST00000454240 TMEM223A0PJW6 202 aa17.64■□□□□ 0.41
SMARCC1-203ENST00000454240 MAP1LC3CQ9BXW4 147 aa17.63■□□□□ 0.41
SMARCC1-203ENST00000454240 ABCA13Q86UQ4 5058 aa17.61■□□□□ 0.41
SMARCC1-203ENST00000454240 A0A1W2PNN7 141 aa17.6■□□□□ 0.41
SMARCC1-203ENST00000454240 PLA2G1BP04054 148 aaKnown RBP17.6■□□□□ 0.41
SMARCC1-203ENST00000454240 GAGE2EQ4V326 116 aa17.6■□□□□ 0.41
SMARCC1-203ENST00000454240 GAGE2DQ9UEU5 116 aa17.6■□□□□ 0.41
SMARCC1-203ENST00000454240 PLNP26678 52 aa17.58■□□□□ 0.4
SMARCC1-203ENST00000454240 KRTAP10-4P60372 401 aaPredicted RBP17.57■□□□□ 0.4
SMARCC1-203ENST00000454240 SRRM2Q9UQ35 2752 aaKnown RBP17.56■□□□□ 0.4
SMARCC1-203ENST00000454240 SYS1-DBNDD2H3BUS1 97 aa17.56■□□□□ 0.4
SMARCC1-203ENST00000454240 DPM2O94777 84 aa17.56■□□□□ 0.4
SMARCC1-203ENST00000454240 PMCHL2Q9BQD1 86 aa17.56■□□□□ 0.4
SMARCC1-203ENST00000454240 PCLOQ9Y6V0 5065 aa17.56■□□□□ 0.4
SMARCC1-203ENST00000454240 IGKCP01834 107 aa17.53■□□□□ 0.4
SMARCC1-203ENST00000454240 RPL37AP61513 92 aaKnown RBP17.53■□□□□ 0.4
SMARCC1-203ENST00000454240 C9orf129Q5T035 196 aaKnown RBP17.53■□□□□ 0.4
SMARCC1-203ENST00000454240 SFTA2Q6UW10 78 aa17.52■□□□□ 0.4
SMARCC1-203ENST00000454240 C7orf33Q8WU49 177 aa17.52■□□□□ 0.4
SMARCC1-203ENST00000454240 ZNF625Q96I27 306 aaPredicted RBP17.52■□□□□ 0.4
SMARCC1-203ENST00000454240 FAM168BA1KXE4 195 aa17.51■□□□□ 0.39
SMARCC1-203ENST00000454240 PET117Q6UWS5 81 aa17.49■□□□□ 0.39
SMARCC1-203ENST00000454240 C3orf79P0CE67 100 aa17.48■□□□□ 0.39
SMARCC1-203ENST00000454240 INAFM2P0DMQ5 153 aa17.48■□□□□ 0.39
SMARCC1-203ENST00000454240 LINC01545Q5VT33 79 aa17.48■□□□□ 0.39
SMARCC1-203ENST00000454240 KRTAP7-1Q8IUC3 87 aa17.48■□□□□ 0.39
SMARCC1-203ENST00000454240 XAGE1AQ9HD64 81 aa17.47■□□□□ 0.39
SMARCC1-203ENST00000454240 ERG28Q9UKR5 140 aa17.46■□□□□ 0.39
SMARCC1-203ENST00000454240 FAM19A5Q7Z5A7 132 aaPredicted RBP17.45■□□□□ 0.38
SMARCC1-203ENST00000454240 LEPROTO15243 131 aa17.44■□□□□ 0.38
SMARCC1-203ENST00000454240 PFN2P35080 140 aa17.44■□□□□ 0.38
SMARCC1-203ENST00000454240 COX17Q14061 63 aa17.44■□□□□ 0.38
SMARCC1-203ENST00000454240 PHF5AQ7RTV0 110 aaKnown RBP17.44■□□□□ 0.38
SMARCC1-203ENST00000454240 HERVK_113P61574 105 aa17.43■□□□□ 0.38
SMARCC1-203ENST00000454240 KRTDAPP60985 99 aa17.42■□□□□ 0.38
SMARCC1-203ENST00000454240 HIST3H2BBQ8N257 126 aa17.42■□□□□ 0.38
SMARCC1-203ENST00000454240 PLEKHB2Q96CS7 222 aa17.42■□□□□ 0.38
SMARCC1-203ENST00000454240 TSPEAR-AS2P59090 65 aa17.4■□□□□ 0.38
SMARCC1-203ENST00000454240 S100A6P06703 90 aa17.39■□□□□ 0.37
SMARCC1-203ENST00000454240 SERTAD4-AS1Q5TG53 156 aa17.39■□□□□ 0.37
SMARCC1-203ENST00000454240 NDUFA12Q9UI09 145 aa17.39■□□□□ 0.37
SMARCC1-203ENST00000454240 HERV-K104P63124 156 aa17.38■□□□□ 0.37
SMARCC1-203ENST00000454240 PKHD1L1Q86WI1 4243 aa17.37■□□□□ 0.37
SMARCC1-203ENST00000454240 J3QQQ9 107 aa17.37■□□□□ 0.37
SMARCC1-203ENST00000454240 M0QXV9 152 aa17.37■□□□□ 0.37
SMARCC1-203ENST00000454240 PRR3P79522 188 aaKnown RBP17.37■□□□□ 0.37
SMARCC1-203ENST00000454240 PLA2G2DQ9UNK4 145 aa17.37■□□□□ 0.37
SMARCC1-203ENST00000454240 MYMXA0A1B0GTQ4 84 aa17.36■□□□□ 0.37
SMARCC1-203ENST00000454240 E9PLD3 99 aa17.36■□□□□ 0.37
SMARCC1-203ENST00000454240 HIST1H2BLQ99880 126 aa17.36■□□□□ 0.37
SMARCC1-203ENST00000454240 S100A2P29034 98 aa17.35■□□□□ 0.37
SMARCC1-203ENST00000454240 HNRNPA3P51991 378 aaKnown RBP17.35■□□□□ 0.37
SMARCC1-203ENST00000454240 SND1-IT1Q9HBX3 110 aa17.35■□□□□ 0.37
SMARCC1-203ENST00000454240 C22orf24Q9Y442 160 aa17.34■□□□□ 0.37
SMARCC1-203ENST00000454240 LINC00158P58513 81 aa17.33■□□□□ 0.36
SMARCC1-203ENST00000454240 NMUP48645 174 aa17.32■□□□□ 0.36
SMARCC1-203ENST00000454240 C20orf202A1L168 122 aa17.31■□□□□ 0.36
SMARCC1-203ENST00000454240 SMIM13P0DJ93 91 aa17.31■□□□□ 0.36
SMARCC1-203ENST00000454240 LGALS3P17931 250 aaKnown RBP17.31■□□□□ 0.36
SMARCC1-203ENST00000454240 SNRPEP62304 92 aaKnown RBP17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 107.2 ms