RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 LOC107984640A0A0U1RRK4 108 aa11.82□□□□□ -0.52
PTCD3-204ENST00000418628 EPM2AB3EWF7 344 aa11.82□□□□□ -0.52
PTCD3-204ENST00000418628 UNQ6190/PRO20217Q6UXQ8 127 aa11.82□□□□□ -0.52
PTCD3-204ENST00000418628 IFI27L1Q96BM0 104 aa11.82□□□□□ -0.52
PTCD3-204ENST00000418628 A0A087WYN8 130 aa11.81□□□□□ -0.52
PTCD3-204ENST00000418628 TLX1NBP0CAT3 122 aa11.81□□□□□ -0.52
PTCD3-204ENST00000418628 PTTG1IPP53801 180 aa11.81□□□□□ -0.52
PTCD3-204ENST00000418628 LINC00528Q8N1L1 170 aa11.81□□□□□ -0.52
PTCD3-204ENST00000418628 TRBV30A0A0K0K1B3 111 aa11.8□□□□□ -0.52
PTCD3-204ENST00000418628 ZNF22P17026 224 aaPredicted RBP11.8□□□□□ -0.52
PTCD3-204ENST00000418628 KRTAP10-4P60372 401 aaPredicted RBP11.8□□□□□ -0.52
PTCD3-204ENST00000418628 C2orf82Q6UX34 121 aa11.8□□□□□ -0.52
PTCD3-204ENST00000418628 PACRGQ96M98 296 aaPredicted RBP11.8□□□□□ -0.52
PTCD3-204ENST00000418628 IGKV2-24A0A0C4DH68 120 aa11.79□□□□□ -0.52
PTCD3-204ENST00000418628 IGLV5-39A0A0G2JS06 123 aa11.79□□□□□ -0.52
PTCD3-204ENST00000418628 C11orf86A6NJI1 115 aa11.79□□□□□ -0.52
PTCD3-204ENST00000418628 LINC00474Q9P2X8 69 aa11.79□□□□□ -0.52
PTCD3-204ENST00000418628 NDUFA6P56556 154 aa11.78□□□□□ -0.52
PTCD3-204ENST00000418628 SPINK8P0C7L1 97 aa11.77□□□□□ -0.53
PTCD3-204ENST00000418628 MAJINQ3KP22 176 aa11.77□□□□□ -0.53
PTCD3-204ENST00000418628 PKHD1L1Q86WI1 4243 aa11.77□□□□□ -0.53
PTCD3-204ENST00000418628 FAM229AH3BQW9 127 aa11.76□□□□□ -0.53
PTCD3-204ENST00000418628 H3BRM9 83 aa11.76□□□□□ -0.53
PTCD3-204ENST00000418628 LEPROTL1O95214 131 aa11.76□□□□□ -0.53
PTCD3-204ENST00000418628 CXCL5P42830 114 aa11.76□□□□□ -0.53
PTCD3-204ENST00000418628 TOMM7Q9P0U1 55 aa11.76□□□□□ -0.53
PTCD3-204ENST00000418628 CHTOPQ9Y3Y2 248 aaKnown RBP11.76□□□□□ -0.53
PTCD3-204ENST00000418628 FLG2Q5D862 2391 aaPredicted RBP11.75□□□□□ -0.53
PTCD3-204ENST00000418628 F8VRH5 84 aa11.75□□□□□ -0.53
PTCD3-204ENST00000418628 PRSS2P07478 247 aa11.75□□□□□ -0.53
PTCD3-204ENST00000418628 COA6Q5JTJ3 125 aaKnown RBP11.75□□□□□ -0.53
PTCD3-204ENST00000418628 COX7B2Q8TF08 81 aa11.75□□□□□ -0.53
PTCD3-204ENST00000418628 ODF1Q14990 250 aa11.74□□□□□ -0.53
PTCD3-204ENST00000418628 C6orf226Q5I0X4 101 aa11.74□□□□□ -0.53
PTCD3-204ENST00000418628 Q6ZRP5 223 aa11.74□□□□□ -0.53
PTCD3-204ENST00000418628 STPG4Q8N801 248 aa11.74□□□□□ -0.53
PTCD3-204ENST00000418628 RPL18AQ02543 176 aaKnown RBP11.73□□□□□ -0.53
PTCD3-204ENST00000418628 GAGE2BQ13066 116 aa11.73□□□□□ -0.53
PTCD3-204ENST00000418628 CKS1BP61024 79 aa11.72□□□□□ -0.53
PTCD3-204ENST00000418628 C9orf116Q5BN46 136 aaPredicted RBP11.72□□□□□ -0.53
PTCD3-204ENST00000418628 HSPB8Q9UJY1 196 aa11.72□□□□□ -0.53
PTCD3-204ENST00000418628 NDUFC2-KCTD14E9PQ53 114 aa11.71□□□□□ -0.53
PTCD3-204ENST00000418628 PLA2G1BP04054 148 aaKnown RBP11.71□□□□□ -0.53
PTCD3-204ENST00000418628 A0A1W2PNN7 141 aa11.69□□□□□ -0.54
PTCD3-204ENST00000418628 TMEM223A0PJW6 202 aa11.69□□□□□ -0.54
PTCD3-204ENST00000418628 TMEM170BQ5T4T1 132 aa11.69□□□□□ -0.54
PTCD3-204ENST00000418628 FABP4P15090 132 aa11.68□□□□□ -0.54
PTCD3-204ENST00000418628 DPH3Q96FX2 82 aa11.67□□□□□ -0.54
PTCD3-204ENST00000418628 MYCBP2O75592 4640 aa11.66□□□□□ -0.54
PTCD3-204ENST00000418628 C9orf129Q5T035 196 aaKnown RBP11.66□□□□□ -0.54
PTCD3-204ENST00000418628 KRTAP7-1Q8IUC3 87 aa11.66□□□□□ -0.54
PTCD3-204ENST00000418628 RPL37AP61513 92 aaKnown RBP11.65□□□□□ -0.54
PTCD3-204ENST00000418628 H0Y8G0 127 aa11.64□□□□□ -0.55
PTCD3-204ENST00000418628 GAGE2EQ4V326 116 aa11.64□□□□□ -0.55
PTCD3-204ENST00000418628 ZNF625Q96I27 306 aaPredicted RBP11.64□□□□□ -0.55
PTCD3-204ENST00000418628 GAGE2DQ9UEU5 116 aa11.64□□□□□ -0.55
PTCD3-204ENST00000418628 FAM168BA1KXE4 195 aa11.63□□□□□ -0.55
PTCD3-204ENST00000418628 INAFM2P0DMQ5 153 aa11.63□□□□□ -0.55
PTCD3-204ENST00000418628 PLNP26678 52 aa11.63□□□□□ -0.55
PTCD3-204ENST00000418628 SFTA2Q6UW10 78 aa11.62□□□□□ -0.55
PTCD3-204ENST00000418628 C7orf33Q8WU49 177 aa11.62□□□□□ -0.55
PTCD3-204ENST00000418628 MAP1LC3CQ9BXW4 147 aa11.62□□□□□ -0.55
PTCD3-204ENST00000418628 SYS1-DBNDD2H3BUS1 97 aa11.61□□□□□ -0.55
PTCD3-204ENST00000418628 DPM2O94777 84 aa11.6□□□□□ -0.55
PTCD3-204ENST00000418628 HNRNPA3P51991 378 aaKnown RBP11.6□□□□□ -0.55
PTCD3-204ENST00000418628 PRR3P79522 188 aaKnown RBP11.6□□□□□ -0.55
PTCD3-204ENST00000418628 PMCHL2Q9BQD1 86 aa11.6□□□□□ -0.55
PTCD3-204ENST00000418628 IGKCP01834 107 aa11.58□□□□□ -0.56
PTCD3-204ENST00000418628 LINC01545Q5VT33 79 aa11.58□□□□□ -0.56
PTCD3-204ENST00000418628 COX17Q14061 63 aa11.57□□□□□ -0.56
PTCD3-204ENST00000418628 PHF5AQ7RTV0 110 aaKnown RBP11.57□□□□□ -0.56
PTCD3-204ENST00000418628 FAM19A5Q7Z5A7 132 aaPredicted RBP11.57□□□□□ -0.56
PTCD3-204ENST00000418628 XAGE1AQ9HD64 81 aa11.57□□□□□ -0.56
PTCD3-204ENST00000418628 ERG28Q9UKR5 140 aa11.57□□□□□ -0.56
PTCD3-204ENST00000418628 C3orf79P0CE67 100 aa11.56□□□□□ -0.56
PTCD3-204ENST00000418628 TSPEAR-AS2P59090 65 aa11.56□□□□□ -0.56
PTCD3-204ENST00000418628 SERTAD4-AS1Q5TG53 156 aa11.56□□□□□ -0.56
PTCD3-204ENST00000418628 PET117Q6UWS5 81 aa11.56□□□□□ -0.56
PTCD3-204ENST00000418628 FAT3Q8TDW7 4589 aa11.55□□□□□ -0.56
PTCD3-204ENST00000418628 PLA2G2DQ9UNK4 145 aa11.55□□□□□ -0.56
PTCD3-204ENST00000418628 LRP1Q07954 4544 aaKnown RBP11.55□□□□□ -0.56
PTCD3-204ENST00000418628 DMBT1Q9UGM3 2413 aaPredicted RBP11.54□□□□□ -0.56
PTCD3-204ENST00000418628 M0QXV9 152 aa11.54□□□□□ -0.56
PTCD3-204ENST00000418628 LEPROTO15243 131 aa11.54□□□□□ -0.56
PTCD3-204ENST00000418628 KRTAP11-1Q8IUC1 163 aa11.54□□□□□ -0.56
PTCD3-204ENST00000418628 IGLV5-37A0A075B6J1 123 aa11.52□□□□□ -0.57
PTCD3-204ENST00000418628 PLEKHB2Q96CS7 222 aa11.52□□□□□ -0.57
PTCD3-204ENST00000418628 TP73-AS1Q9UF72 201 aa11.52□□□□□ -0.57
PTCD3-204ENST00000418628 NDUFA12Q9UI09 145 aa11.52□□□□□ -0.57
PTCD3-204ENST00000418628 PFN2P35080 140 aa11.51□□□□□ -0.57
PTCD3-204ENST00000418628 HIST3H2BBQ8N257 126 aa11.51□□□□□ -0.57
PTCD3-204ENST00000418628 PSORS1C2Q9UIG4 136 aa11.51□□□□□ -0.57
PTCD3-204ENST00000418628 HERVK_113P61574 105 aa11.5□□□□□ -0.57
PTCD3-204ENST00000418628 HERV-K104P63124 156 aa11.5□□□□□ -0.57
PTCD3-204ENST00000418628 SND1-IT1Q9HBX3 110 aa11.5□□□□□ -0.57
PTCD3-204ENST00000418628 E9PLD3 99 aa11.49□□□□□ -0.57
PTCD3-204ENST00000418628 J3QQQ9 107 aa11.49□□□□□ -0.57
PTCD3-204ENST00000418628 C22orf24Q9Y442 160 aa11.49□□□□□ -0.57
PTCD3-204ENST00000418628 MYMXA0A1B0GTQ4 84 aa11.47□□□□□ -0.57
PTCD3-204ENST00000418628 NMUP48645 174 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 108.7 ms