RNA–Protein interactions for RNA: ENST00000409417.5

PDLIM2-207, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,487 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-207ENST00000409417 H3BRM9 83 aa12.59□□□□□ -0.39
PDLIM2-207ENST00000409417 PTTG1IPP53801 180 aa12.59□□□□□ -0.39
PDLIM2-207ENST00000409417 C6orf48Q9UBA6 75 aa12.59□□□□□ -0.39
PDLIM2-207ENST00000409417 TRBV30A0A0K0K1B3 111 aa12.58□□□□□ -0.4
PDLIM2-207ENST00000409417 NUPR1O60356 82 aa12.58□□□□□ -0.4
PDLIM2-207ENST00000409417 HIST1H2BKO60814 126 aa12.58□□□□□ -0.4
PDLIM2-207ENST00000409417 HIST1H2BJP06899 126 aa12.58□□□□□ -0.4
PDLIM2-207ENST00000409417 HIST1H2BOP23527 126 aa12.58□□□□□ -0.4
PDLIM2-207ENST00000409417 HIST1H2BBP33778 126 aa12.58□□□□□ -0.4
PDLIM2-207ENST00000409417 HIST1H2BDP58876 126 aa12.58□□□□□ -0.4
PDLIM2-207ENST00000409417 CKS1BP61024 79 aa12.58□□□□□ -0.4
PDLIM2-207ENST00000409417 HIST1H2BCP62807 126 aa12.58□□□□□ -0.4
PDLIM2-207ENST00000409417 HIST2H2BEQ16778 126 aa12.58□□□□□ -0.4
PDLIM2-207ENST00000409417 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.58□□□□□ -0.4
PDLIM2-207ENST00000409417 HIST1H2BHQ93079 126 aa12.58□□□□□ -0.4
PDLIM2-207ENST00000409417 HIST1H2BNQ99877 126 aa12.58□□□□□ -0.4
PDLIM2-207ENST00000409417 HIST1H2BMQ99879 126 aa12.58□□□□□ -0.4
PDLIM2-207ENST00000409417 TRAV12-1A0A0B4J245 112 aa12.57□□□□□ -0.4
PDLIM2-207ENST00000409417 GAGE2BQ13066 116 aa12.57□□□□□ -0.4
PDLIM2-207ENST00000409417 ATP6V1G1O75348 118 aa12.56□□□□□ -0.4
PDLIM2-207ENST00000409417 SPINK8P0C7L1 97 aa12.56□□□□□ -0.4
PDLIM2-207ENST00000409417 STPG4Q8N801 248 aa12.56□□□□□ -0.4
PDLIM2-207ENST00000409417 LEPROTL1O95214 131 aa12.55□□□□□ -0.4
PDLIM2-207ENST00000409417 PLA2G1BP04054 148 aaKnown RBP12.55□□□□□ -0.4
PDLIM2-207ENST00000409417 TLX1NBP0CAT3 122 aa12.55□□□□□ -0.4
PDLIM2-207ENST00000409417 ZNF22P17026 224 aaPredicted RBP12.55□□□□□ -0.4
PDLIM2-207ENST00000409417 RPL18AQ02543 176 aaKnown RBP12.55□□□□□ -0.4
PDLIM2-207ENST00000409417 CHTOPQ9Y3Y2 248 aaKnown RBP12.55□□□□□ -0.4
PDLIM2-207ENST00000409417 C11orf86A6NJI1 115 aa12.54□□□□□ -0.4
PDLIM2-207ENST00000409417 COX7B2Q8TF08 81 aa12.54□□□□□ -0.4
PDLIM2-207ENST00000409417 CXCL5P42830 114 aa12.53□□□□□ -0.4
PDLIM2-207ENST00000409417 HSPB8Q9UJY1 196 aa12.53□□□□□ -0.4
PDLIM2-207ENST00000409417 IGLV5-39A0A0G2JS06 123 aa12.52□□□□□ -0.41
PDLIM2-207ENST00000409417 F8VRH5 84 aa12.52□□□□□ -0.41
PDLIM2-207ENST00000409417 Q6ZRP5 223 aa12.52□□□□□ -0.41
PDLIM2-207ENST00000409417 NDUFC2-KCTD14E9PQ53 114 aa12.51□□□□□ -0.41
PDLIM2-207ENST00000409417 C9orf116Q5BN46 136 aaPredicted RBP12.51□□□□□ -0.41
PDLIM2-207ENST00000409417 VPS13BQ7Z7G8 4022 aa12.51□□□□□ -0.41
PDLIM2-207ENST00000409417 TMEM170BQ5T4T1 132 aa12.5□□□□□ -0.41
PDLIM2-207ENST00000409417 FABP4P15090 132 aa12.49□□□□□ -0.41
PDLIM2-207ENST00000409417 ODF1Q14990 250 aa12.48□□□□□ -0.41
PDLIM2-207ENST00000409417 H0Y8G0 127 aa12.47□□□□□ -0.41
PDLIM2-207ENST00000409417 INAFM2P0DMQ5 153 aa12.47□□□□□ -0.41
PDLIM2-207ENST00000409417 KRTAP10-4P60372 401 aaPredicted RBP12.47□□□□□ -0.41
PDLIM2-207ENST00000409417 GAGE2EQ4V326 116 aa12.47□□□□□ -0.41
PDLIM2-207ENST00000409417 C7orf33Q8WU49 177 aa12.47□□□□□ -0.41
PDLIM2-207ENST00000409417 GAGE2DQ9UEU5 116 aa12.47□□□□□ -0.41
PDLIM2-207ENST00000409417 A0A1W2PNN7 141 aa12.46□□□□□ -0.41
PDLIM2-207ENST00000409417 RPL37AP61513 92 aaKnown RBP12.46□□□□□ -0.41
PDLIM2-207ENST00000409417 COA6Q5JTJ3 125 aaKnown RBP12.45□□□□□ -0.42
PDLIM2-207ENST00000409417 FLG2Q5D862 2391 aaPredicted RBP12.45□□□□□ -0.42
PDLIM2-207ENST00000409417 TMEM223A0PJW6 202 aa12.44□□□□□ -0.42
PDLIM2-207ENST00000409417 MAP1LC3CQ9BXW4 147 aa12.43□□□□□ -0.42
PDLIM2-207ENST00000409417 PLNP26678 52 aa12.41□□□□□ -0.42
PDLIM2-207ENST00000409417 C9orf129Q5T035 196 aaKnown RBP12.41□□□□□ -0.42
PDLIM2-207ENST00000409417 FAM168BA1KXE4 195 aa12.4□□□□□ -0.42
PDLIM2-207ENST00000409417 SFTA2Q6UW10 78 aa12.4□□□□□ -0.42
PDLIM2-207ENST00000409417 DPM2O94777 84 aa12.39□□□□□ -0.43
PDLIM2-207ENST00000409417 XAGE1AQ9HD64 81 aa12.38□□□□□ -0.43
PDLIM2-207ENST00000409417 FAM19A5Q7Z5A7 132 aaPredicted RBP12.37□□□□□ -0.43
PDLIM2-207ENST00000409417 ZNF625Q96I27 306 aaPredicted RBP12.37□□□□□ -0.43
PDLIM2-207ENST00000409417 PMCHL2Q9BQD1 86 aa12.37□□□□□ -0.43
PDLIM2-207ENST00000409417 SYS1-DBNDD2H3BUS1 97 aa12.36□□□□□ -0.43
PDLIM2-207ENST00000409417 KRTAP7-1Q8IUC3 87 aa12.36□□□□□ -0.43
PDLIM2-207ENST00000409417 IGKCP01834 107 aa12.35□□□□□ -0.43
PDLIM2-207ENST00000409417 PRR3P79522 188 aaKnown RBP12.35□□□□□ -0.43
PDLIM2-207ENST00000409417 MYCBP2O75592 4640 aa12.35□□□□□ -0.43
PDLIM2-207ENST00000409417 COX17Q14061 63 aa12.34□□□□□ -0.43
PDLIM2-207ENST00000409417 PHF5AQ7RTV0 110 aaKnown RBP12.34□□□□□ -0.43
PDLIM2-207ENST00000409417 ERG28Q9UKR5 140 aa12.34□□□□□ -0.43
PDLIM2-207ENST00000409417 PFN2P35080 140 aa12.34□□□□□ -0.43
PDLIM2-207ENST00000409417 M0QXV9 152 aa12.32□□□□□ -0.44
PDLIM2-207ENST00000409417 HNRNPA3P51991 378 aaKnown RBP12.32□□□□□ -0.44
PDLIM2-207ENST00000409417 PET117Q6UWS5 81 aa12.32□□□□□ -0.44
PDLIM2-207ENST00000409417 HERVK_113P61574 105 aa12.31□□□□□ -0.44
PDLIM2-207ENST00000409417 SERTAD4-AS1Q5TG53 156 aa12.31□□□□□ -0.44
PDLIM2-207ENST00000409417 LINC01545Q5VT33 79 aa12.31□□□□□ -0.44
PDLIM2-207ENST00000409417 NDUFA12Q9UI09 145 aa12.3□□□□□ -0.44
PDLIM2-207ENST00000409417 LEPROTO15243 131 aa12.29□□□□□ -0.44
PDLIM2-207ENST00000409417 C3orf79P0CE67 100 aa12.29□□□□□ -0.44
PDLIM2-207ENST00000409417 PLEKHB2Q96CS7 222 aa12.29□□□□□ -0.44
PDLIM2-207ENST00000409417 HERV-K104P63124 156 aa12.28□□□□□ -0.44
PDLIM2-207ENST00000409417 PSORS1C2Q9UIG4 136 aa12.28□□□□□ -0.44
PDLIM2-207ENST00000409417 PLA2G2DQ9UNK4 145 aa12.28□□□□□ -0.44
PDLIM2-207ENST00000409417 DMBT1Q9UGM3 2413 aaPredicted RBP12.28□□□□□ -0.44
PDLIM2-207ENST00000409417 SND1-IT1Q9HBX3 110 aa12.27□□□□□ -0.44
PDLIM2-207ENST00000409417 C22orf24Q9Y442 160 aa12.27□□□□□ -0.44
PDLIM2-207ENST00000409417 MYMXA0A1B0GTQ4 84 aa12.27□□□□□ -0.45
PDLIM2-207ENST00000409417 J3QQQ9 107 aa12.27□□□□□ -0.45
PDLIM2-207ENST00000409417 TSPEAR-AS2P59090 65 aa12.27□□□□□ -0.45
PDLIM2-207ENST00000409417 KRTDAPP60985 99 aa12.27□□□□□ -0.45
PDLIM2-207ENST00000409417 LINC00158P58513 81 aa12.26□□□□□ -0.45
PDLIM2-207ENST00000409417 TP73-AS1Q9UF72 201 aa12.26□□□□□ -0.45
PDLIM2-207ENST00000409417 UBE2BP63146 152 aa12.25□□□□□ -0.45
PDLIM2-207ENST00000409417 LBHQ53QV2 105 aaPredicted RBP12.25□□□□□ -0.45
PDLIM2-207ENST00000409417 KRTAP11-1Q8IUC1 163 aa12.25□□□□□ -0.45
PDLIM2-207ENST00000409417 LINC00587B1AMM8 73 aa12.23□□□□□ -0.45
PDLIM2-207ENST00000409417 E9PLD3 99 aa12.23□□□□□ -0.45
PDLIM2-207ENST00000409417 NMUP48645 174 aa12.23□□□□□ -0.45
PDLIM2-207ENST00000409417 MRPL55Q7Z7F7 128 aaKnown RBP12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms