RNA–Protein interactions for RNA: ENST00000397408.5

TSPAN4-206, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene TSPAN4, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-206ENST00000397408 SPINK8P0C7L1 97 aa13.46□□□□□ -0.26
TSPAN4-206ENST00000397408 HIST1H2BOP23527 126 aa13.46□□□□□ -0.26
TSPAN4-206ENST00000397408 HIST1H2BBP33778 126 aa13.46□□□□□ -0.26
TSPAN4-206ENST00000397408 HIST1H2BDP58876 126 aa13.46□□□□□ -0.26
TSPAN4-206ENST00000397408 HIST1H2BCP62807 126 aa13.46□□□□□ -0.26
TSPAN4-206ENST00000397408 HIST2H2BEQ16778 126 aa13.46□□□□□ -0.26
TSPAN4-206ENST00000397408 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.46□□□□□ -0.26
TSPAN4-206ENST00000397408 HIST1H2BHQ93079 126 aa13.46□□□□□ -0.26
TSPAN4-206ENST00000397408 HIST1H2BNQ99877 126 aa13.46□□□□□ -0.26
TSPAN4-206ENST00000397408 HIST1H2BMQ99879 126 aa13.46□□□□□ -0.26
TSPAN4-206ENST00000397408 H3BRM9 83 aa13.45□□□□□ -0.26
TSPAN4-206ENST00000397408 PTTG1IPP53801 180 aa13.45□□□□□ -0.26
TSPAN4-206ENST00000397408 RPL18AQ02543 176 aaKnown RBP13.45□□□□□ -0.26
TSPAN4-206ENST00000397408 GAGE2BQ13066 116 aa13.45□□□□□ -0.26
TSPAN4-206ENST00000397408 C6orf226Q5I0X4 101 aa13.45□□□□□ -0.26
TSPAN4-206ENST00000397408 LINC00474Q9P2X8 69 aa13.45□□□□□ -0.26
TSPAN4-206ENST00000397408 ZNF22P17026 224 aaPredicted RBP13.44□□□□□ -0.26
TSPAN4-206ENST00000397408 CKS1BP61024 79 aa13.44□□□□□ -0.26
TSPAN4-206ENST00000397408 CHTOPQ9Y3Y2 248 aaKnown RBP13.44□□□□□ -0.26
TSPAN4-206ENST00000397408 TRAV12-1A0A0B4J245 112 aa13.43□□□□□ -0.26
TSPAN4-206ENST00000397408 C11orf86A6NJI1 115 aa13.43□□□□□ -0.26
TSPAN4-206ENST00000397408 LEPROTL1O95214 131 aa13.43□□□□□ -0.26
TSPAN4-206ENST00000397408 STPG4Q8N801 248 aa13.43□□□□□ -0.26
TSPAN4-206ENST00000397408 PCLOQ9Y6V0 5065 aa13.42□□□□□ -0.26
TSPAN4-206ENST00000397408 TRBV30A0A0K0K1B3 111 aa13.42□□□□□ -0.26
TSPAN4-206ENST00000397408 PLAC8Q9NZF1 115 aa13.42□□□□□ -0.26
TSPAN4-206ENST00000397408 COX7B2Q8TF08 81 aa13.41□□□□□ -0.26
TSPAN4-206ENST00000397408 FABP4P15090 132 aa13.4□□□□□ -0.26
TSPAN4-206ENST00000397408 VPS13BQ7Z7G8 4022 aa13.4□□□□□ -0.26
TSPAN4-206ENST00000397408 H0Y8G0 127 aa13.39□□□□□ -0.27
TSPAN4-206ENST00000397408 CXCL5P42830 114 aa13.39□□□□□ -0.27
TSPAN4-206ENST00000397408 TMEM170BQ5T4T1 132 aa13.39□□□□□ -0.27
TSPAN4-206ENST00000397408 HSPB8Q9UJY1 196 aa13.39□□□□□ -0.27
TSPAN4-206ENST00000397408 F8VRH5 84 aa13.39□□□□□ -0.27
TSPAN4-206ENST00000397408 PLA2G1BP04054 148 aaKnown RBP13.39□□□□□ -0.27
TSPAN4-206ENST00000397408 TLX1NBP0CAT3 122 aa13.39□□□□□ -0.27
TSPAN4-206ENST00000397408 C9orf116Q5BN46 136 aaPredicted RBP13.39□□□□□ -0.27
TSPAN4-206ENST00000397408 Q6ZRP5 223 aa13.38□□□□□ -0.27
TSPAN4-206ENST00000397408 IGLV5-39A0A0G2JS06 123 aa13.37□□□□□ -0.27
TSPAN4-206ENST00000397408 SRRM2Q9UQ35 2752 aaKnown RBP13.36□□□□□ -0.27
TSPAN4-206ENST00000397408 NDUFC2-KCTD14E9PQ53 114 aa13.35□□□□□ -0.27
TSPAN4-206ENST00000397408 ODF1Q14990 250 aa13.35□□□□□ -0.27
TSPAN4-206ENST00000397408 GAGE2EQ4V326 116 aa13.35□□□□□ -0.27
TSPAN4-206ENST00000397408 GAGE2DQ9UEU5 116 aa13.35□□□□□ -0.27
TSPAN4-206ENST00000397408 RPL37AP61513 92 aaKnown RBP13.33□□□□□ -0.28
TSPAN4-206ENST00000397408 A0A1W2PNN7 141 aa13.31□□□□□ -0.28
TSPAN4-206ENST00000397408 C7orf33Q8WU49 177 aa13.31□□□□□ -0.28
TSPAN4-206ENST00000397408 TMEM223A0PJW6 202 aa13.3□□□□□ -0.28
TSPAN4-206ENST00000397408 INAFM2P0DMQ5 153 aa13.3□□□□□ -0.28
TSPAN4-206ENST00000397408 COA6Q5JTJ3 125 aaKnown RBP13.3□□□□□ -0.28
TSPAN4-206ENST00000397408 KRTAP10-4P60372 401 aaPredicted RBP13.3□□□□□ -0.28
TSPAN4-206ENST00000397408 MAP1LC3CQ9BXW4 147 aa13.3□□□□□ -0.28
TSPAN4-206ENST00000397408 FAM168BA1KXE4 195 aa13.28□□□□□ -0.28
TSPAN4-206ENST00000397408 PLNP26678 52 aa13.28□□□□□ -0.28
TSPAN4-206ENST00000397408 PMCHL2Q9BQD1 86 aa13.28□□□□□ -0.28
TSPAN4-206ENST00000397408 C9orf129Q5T035 196 aaKnown RBP13.26□□□□□ -0.29
TSPAN4-206ENST00000397408 FAM19A5Q7Z5A7 132 aaPredicted RBP13.26□□□□□ -0.29
TSPAN4-206ENST00000397408 FLG2Q5D862 2391 aaPredicted RBP13.26□□□□□ -0.29
TSPAN4-206ENST00000397408 DPM2O94777 84 aa13.25□□□□□ -0.29
TSPAN4-206ENST00000397408 XAGE1AQ9HD64 81 aa13.24□□□□□ -0.29
TSPAN4-206ENST00000397408 SYS1-DBNDD2H3BUS1 97 aa13.23□□□□□ -0.29
TSPAN4-206ENST00000397408 IGKCP01834 107 aa13.22□□□□□ -0.29
TSPAN4-206ENST00000397408 SFTA2Q6UW10 78 aa13.22□□□□□ -0.29
TSPAN4-206ENST00000397408 PHF5AQ7RTV0 110 aaKnown RBP13.22□□□□□ -0.29
TSPAN4-206ENST00000397408 ZNF625Q96I27 306 aaPredicted RBP13.22□□□□□ -0.29
TSPAN4-206ENST00000397408 PFN2P35080 140 aa13.21□□□□□ -0.3
TSPAN4-206ENST00000397408 KRTAP7-1Q8IUC3 87 aa13.21□□□□□ -0.3
TSPAN4-206ENST00000397408 ERG28Q9UKR5 140 aa13.21□□□□□ -0.3
TSPAN4-206ENST00000397408 PRR3P79522 188 aaKnown RBP13.2□□□□□ -0.3
TSPAN4-206ENST00000397408 M0QXV9 152 aa13.19□□□□□ -0.3
TSPAN4-206ENST00000397408 HNRNPA3P51991 378 aaKnown RBP13.18□□□□□ -0.3
TSPAN4-206ENST00000397408 HERVK_113P61574 105 aa13.18□□□□□ -0.3
TSPAN4-206ENST00000397408 C3orf79P0CE67 100 aa13.17□□□□□ -0.3
TSPAN4-206ENST00000397408 SERTAD4-AS1Q5TG53 156 aa13.17□□□□□ -0.3
TSPAN4-206ENST00000397408 LINC01545Q5VT33 79 aa13.17□□□□□ -0.3
TSPAN4-206ENST00000397408 PET117Q6UWS5 81 aa13.17□□□□□ -0.3
TSPAN4-206ENST00000397408 TSPEAR-AS2P59090 65 aa13.16□□□□□ -0.3
TSPAN4-206ENST00000397408 KRTDAPP60985 99 aa13.16□□□□□ -0.3
TSPAN4-206ENST00000397408 LEPROTO15243 131 aa13.15□□□□□ -0.3
TSPAN4-206ENST00000397408 COX17Q14061 63 aa13.15□□□□□ -0.3
TSPAN4-206ENST00000397408 PLEKHB2Q96CS7 222 aa13.15□□□□□ -0.3
TSPAN4-206ENST00000397408 NDUFA12Q9UI09 145 aa13.15□□□□□ -0.3
TSPAN4-206ENST00000397408 MYCBP2O75592 4640 aa13.15□□□□□ -0.3
TSPAN4-206ENST00000397408 PKHD1L1Q86WI1 4243 aa13.12□□□□□ -0.31
TSPAN4-206ENST00000397408 MYMXA0A1B0GTQ4 84 aa13.12□□□□□ -0.31
TSPAN4-206ENST00000397408 J3QQQ9 107 aa13.12□□□□□ -0.31
TSPAN4-206ENST00000397408 LINC00158P58513 81 aa13.12□□□□□ -0.31
TSPAN4-206ENST00000397408 HERV-K104P63124 156 aa13.12□□□□□ -0.31
TSPAN4-206ENST00000397408 UBE2BP63146 152 aa13.12□□□□□ -0.31
TSPAN4-206ENST00000397408 SND1-IT1Q9HBX3 110 aa13.12□□□□□ -0.31
TSPAN4-206ENST00000397408 PSORS1C2Q9UIG4 136 aa13.12□□□□□ -0.31
TSPAN4-206ENST00000397408 C22orf24Q9Y442 160 aa13.12□□□□□ -0.31
TSPAN4-206ENST00000397408 A0A0U1RRA0 63 aa13.11□□□□□ -0.31
TSPAN4-206ENST00000397408 S100A6P06703 90 aa13.11□□□□□ -0.31
TSPAN4-206ENST00000397408 MEIG1Q5JSS6 88 aa13.11□□□□□ -0.31
TSPAN4-206ENST00000397408 KRTAP11-1Q8IUC1 163 aa13.11□□□□□ -0.31
TSPAN4-206ENST00000397408 HIST3H2BBQ8N257 126 aa13.11□□□□□ -0.31
TSPAN4-206ENST00000397408 LGALS3P17931 250 aaKnown RBP13.1□□□□□ -0.31
TSPAN4-206ENST00000397408 PLA2G2DQ9UNK4 145 aa13.1□□□□□ -0.31
TSPAN4-206ENST00000397408 SMIM13P0DJ93 91 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms