RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 REG3GQ6UW15 175 aa4.53□□□□□ -1.68
CSMD1-201ENST00000335551 C4orf26Q17RF5 130 aa4.53□□□□□ -1.68
CSMD1-201ENST00000335551 C1orf64Q8NEQ6 169 aa4.53□□□□□ -1.68
CSMD1-201ENST00000335551 DEFB131BA0A096LNP1 70 aa4.53□□□□□ -1.68
CSMD1-201ENST00000335551 PLA2G2AP14555 144 aa4.53□□□□□ -1.68
CSMD1-201ENST00000335551 COL4A4P53420 1690 aaPredicted RBP4.53□□□□□ -1.68
CSMD1-201ENST00000335551 KLLNB2CW77 178 aa4.53□□□□□ -1.68
CSMD1-201ENST00000335551 X6R8D5 127 aa4.53□□□□□ -1.68
CSMD1-201ENST00000335551 POLR2KP53803 58 aaKnown RBP4.53□□□□□ -1.68
CSMD1-201ENST00000335551 PCOTHQ58A44 107 aa4.53□□□□□ -1.68
CSMD1-201ENST00000335551 RPL37AP8A6NKH3 93 aa4.53□□□□□ -1.68
CSMD1-201ENST00000335551 Q8N7P7 452 aa4.53□□□□□ -1.68
CSMD1-201ENST00000335551 LINC00959A0A1B0GUT2 108 aa4.53□□□□□ -1.68
CSMD1-201ENST00000335551 ZNF295-AS1Q8N0V1 137 aa4.53□□□□□ -1.68
CSMD1-201ENST00000335551 F8WDY8 70 aa4.53□□□□□ -1.68
CSMD1-201ENST00000335551 C1orf229Q6ZS94 237 aaPredicted RBP4.53□□□□□ -1.68
CSMD1-201ENST00000335551 ZFP36P26651 326 aaKnown RBP4.52□□□□□ -1.69
CSMD1-201ENST00000335551 PRM2P04554 102 aa4.52□□□□□ -1.69
CSMD1-201ENST00000335551 IGIPA6NJ69 53 aa4.52□□□□□ -1.69
CSMD1-201ENST00000335551 CDIP1Q9H305 208 aa4.52□□□□□ -1.69
CSMD1-201ENST00000335551 DEFB114Q30KQ6 69 aa4.52□□□□□ -1.69
CSMD1-201ENST00000335551 SPINT4Q6UDR6 99 aa4.52□□□□□ -1.69
CSMD1-201ENST00000335551 LINC00575Q6W349 94 aa4.52□□□□□ -1.69
CSMD1-201ENST00000335551 FSTL3O95633 263 aa4.52□□□□□ -1.69
CSMD1-201ENST00000335551 EGFEM1PQ0D2K5 195 aa4.52□□□□□ -1.69
CSMD1-201ENST00000335551 IGFL2Q6UWQ7 119 aa4.52□□□□□ -1.69
CSMD1-201ENST00000335551 RNASE3P12724 160 aaKnown RBP4.51□□□□□ -1.69
CSMD1-201ENST00000335551 ACYP2P14621 99 aa4.51□□□□□ -1.69
CSMD1-201ENST00000335551 DAZAP2Q15038 168 aaPredicted RBP4.51□□□□□ -1.69
CSMD1-201ENST00000335551 LINC00337Q8N6G1 96 aa4.51□□□□□ -1.69
CSMD1-201ENST00000335551 CDC42SE2Q9NRR3 84 aa4.51□□□□□ -1.69
CSMD1-201ENST00000335551 H3BPC8 53 aa4.51□□□□□ -1.69
CSMD1-201ENST00000335551 SPINK1P00995 79 aa4.51□□□□□ -1.69
CSMD1-201ENST00000335551 TRAV10A0A0B4J240 114 aa4.5□□□□□ -1.69
CSMD1-201ENST00000335551 A0A1B0GW54 56 aa4.5□□□□□ -1.69
CSMD1-201ENST00000335551 ZNF702PQ9H963 129 aa4.5□□□□□ -1.69
CSMD1-201ENST00000335551 CYSRT1A8MQ03 144 aa4.5□□□□□ -1.69
CSMD1-201ENST00000335551 RETNLBQ9BQ08 111 aa4.5□□□□□ -1.69
CSMD1-201ENST00000335551 TNFRSF13BO14836 293 aaPredicted RBP4.5□□□□□ -1.69
CSMD1-201ENST00000335551 LINC00846Q9NV44 126 aa4.5□□□□□ -1.69
CSMD1-201ENST00000335551 MGAM2Q2M2H8 2515 aa4.5□□□□□ -1.69
CSMD1-201ENST00000335551 CRIP2P52943 208 aaPredicted RBP4.5□□□□□ -1.69
CSMD1-201ENST00000335551 KPRPQ5T749 579 aaPredicted RBP4.5□□□□□ -1.69
CSMD1-201ENST00000335551 Q9BRP9 147 aa4.5□□□□□ -1.69
CSMD1-201ENST00000335551 LINC00242Q5T6M2 205 aa4.49□□□□□ -1.69
CSMD1-201ENST00000335551 Q6ZTC4 211 aa4.49□□□□□ -1.69
CSMD1-201ENST00000335551 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.49□□□□□ -1.69
CSMD1-201ENST00000335551 GRNP28799 593 aaKnown RBP4.49□□□□□ -1.69
CSMD1-201ENST00000335551 ATP11AUNQ6ZP68 121 aa4.49□□□□□ -1.69
CSMD1-201ENST00000335551 LINC00310P59036 64 aa4.49□□□□□ -1.69
CSMD1-201ENST00000335551 SMIM1B2RUZ4 78 aa4.49□□□□□ -1.69
CSMD1-201ENST00000335551 CHCHD7Q9BUK0 85 aa4.49□□□□□ -1.69
CSMD1-201ENST00000335551 SBSPONQ8IVN8 264 aa4.49□□□□□ -1.69
CSMD1-201ENST00000335551 CD164Q04900 197 aa4.49□□□□□ -1.69
CSMD1-201ENST00000335551 NOTCH1P46531 2555 aa4.49□□□□□ -1.69
CSMD1-201ENST00000335551 C7orf65Q6ZTY9 151 aa4.49□□□□□ -1.69
CSMD1-201ENST00000335551 C6orf48Q9UBA6 75 aa4.49□□□□□ -1.69
CSMD1-201ENST00000335551 COL4A3Q01955 1670 aa4.49□□□□□ -1.69
CSMD1-201ENST00000335551 J3QL48 77 aa4.48□□□□□ -1.69
CSMD1-201ENST00000335551 ADAMTSL4-AS1Q5T5F5 129 aa4.48□□□□□ -1.69
CSMD1-201ENST00000335551 CIRBP-AS1Q8TBR5 109 aa4.48□□□□□ -1.69
CSMD1-201ENST00000335551 STAB1Q9NY15 2570 aa4.48□□□□□ -1.69
CSMD1-201ENST00000335551 OXLD1Q5BKU9 147 aa4.48□□□□□ -1.69
CSMD1-201ENST00000335551 BBC3Q96PG8 261 aaPredicted RBP4.48□□□□□ -1.69
CSMD1-201ENST00000335551 BRWD1-AS2P59051 145 aa4.48□□□□□ -1.69
CSMD1-201ENST00000335551 LINC01561Q8N1V8 128 aa4.47□□□□□ -1.69
CSMD1-201ENST00000335551 PROK1P58294 105 aa4.47□□□□□ -1.69
CSMD1-201ENST00000335551 TSPEAR-AS2P59090 65 aa4.47□□□□□ -1.69
CSMD1-201ENST00000335551 PRLHP81277 87 aa4.47□□□□□ -1.69
CSMD1-201ENST00000335551 AMELXQ99217 191 aa4.47□□□□□ -1.69
CSMD1-201ENST00000335551 DMBT1Q9UGM3 2413 aaPredicted RBP4.47□□□□□ -1.69
CSMD1-201ENST00000335551 PRR9Q5T870 116 aa4.47□□□□□ -1.69
CSMD1-201ENST00000335551 CYP4F30PQ9H0H9 118 aa4.47□□□□□ -1.69
CSMD1-201ENST00000335551 FAM229AH3BQW9 127 aa4.47□□□□□ -1.69
CSMD1-201ENST00000335551 FBXL19-AS1Q494R0 122 aa4.46□□□□□ -1.7
CSMD1-201ENST00000335551 CFAP46Q8IYW2 2715 aa4.46□□□□□ -1.7
CSMD1-201ENST00000335551 A0A087WSZ3 146 aa4.46□□□□□ -1.7
CSMD1-201ENST00000335551 MSMPQ1L6U9 139 aa4.46□□□□□ -1.7
CSMD1-201ENST00000335551 SMIM29Q86T20 159 aa4.46□□□□□ -1.7
CSMD1-201ENST00000335551 MUC22E2RYF6 1773 aaPredicted RBP4.46□□□□□ -1.7
CSMD1-201ENST00000335551 Q6YL49 198 aa4.46□□□□□ -1.7
CSMD1-201ENST00000335551 ERC2-IT1O76042 136 aa4.45□□□□□ -1.7
CSMD1-201ENST00000335551 C2orf48Q96LS8 159 aa4.45□□□□□ -1.7
CSMD1-201ENST00000335551 UNQ6190/PRO20217Q6UXQ8 127 aa4.45□□□□□ -1.7
CSMD1-201ENST00000335551 GAS8-AS1O95177 125 aa4.44□□□□□ -1.7
CSMD1-201ENST00000335551 C9orf116Q5BN46 136 aaPredicted RBP4.44□□□□□ -1.7
CSMD1-201ENST00000335551 PSMG3-AS1Q96PY0 264 aa4.44□□□□□ -1.7
CSMD1-201ENST00000335551 IGKV2D-30A0A075B6S6 120 aa4.44□□□□□ -1.7
CSMD1-201ENST00000335551 IGKV2-30P06310 120 aa4.44□□□□□ -1.7
CSMD1-201ENST00000335551 NHLRC4P0CG21 123 aaPredicted RBP4.44□□□□□ -1.7
CSMD1-201ENST00000335551 C11orf21Q9P2W6 132 aa4.44□□□□□ -1.7
CSMD1-201ENST00000335551 Q8N2B8 174 aa4.44□□□□□ -1.7
CSMD1-201ENST00000335551 Q9UF83 564 aa4.44□□□□□ -1.7
CSMD1-201ENST00000335551 FLNBO75369 2602 aaKnown RBP4.44□□□□□ -1.7
CSMD1-201ENST00000335551 A0A1B0GUV1 79 aa4.44□□□□□ -1.7
CSMD1-201ENST00000335551 LOC110117498A0A087WWA1 95 aa4.44□□□□□ -1.7
CSMD1-201ENST00000335551 TRAV22A0A0B4J277 110 aa4.43□□□□□ -1.7
CSMD1-201ENST00000335551 PLA2G1BP04054 148 aaKnown RBP4.43□□□□□ -1.7
CSMD1-201ENST00000335551 Q6ZPA2 131 aa4.43□□□□□ -1.7
CSMD1-201ENST00000335551 KTN1-AS1Q86SY8 53 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms