RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 NPYP01303 97 aa6.45□□□□□ -1.38
SCN1A-222ENST00000642141 MT1HL1P0DM35 61 aa6.45□□□□□ -1.38
SCN1A-222ENST00000642141 LINC00518Q8N0U6 118 aa6.45□□□□□ -1.38
SCN1A-222ENST00000642141 PLA2G2DQ9UNK4 145 aa6.45□□□□□ -1.38
SCN1A-222ENST00000642141 A0A0J9YXV3 536 aa6.44□□□□□ -1.38
SCN1A-222ENST00000642141 A0A1B0GW15 77 aa6.44□□□□□ -1.38
SCN1A-222ENST00000642141 HBBP68871 147 aa6.44□□□□□ -1.38
SCN1A-222ENST00000642141 PRR3P79522 188 aaKnown RBP6.44□□□□□ -1.38
SCN1A-222ENST00000642141 Q6ZRU5 148 aa6.44□□□□□ -1.38
SCN1A-222ENST00000642141 C20orf78Q9BR46 151 aa6.44□□□□□ -1.38
SCN1A-222ENST00000642141 CSDC2Q9Y534 153 aaKnown RBP6.44□□□□□ -1.38
SCN1A-222ENST00000642141 TRBV24-1A0A075B6N3 115 aa6.43□□□□□ -1.38
SCN1A-222ENST00000642141 A0A1B0GXF2 115 aa6.43□□□□□ -1.38
SCN1A-222ENST00000642141 S100A6P06703 90 aa6.43□□□□□ -1.38
SCN1A-222ENST00000642141 SMAGPQ0VAQ4 97 aa6.43□□□□□ -1.38
SCN1A-222ENST00000642141 ODF1Q14990 250 aa6.43□□□□□ -1.38
SCN1A-222ENST00000642141 FAM104AQ969W3 186 aa6.43□□□□□ -1.38
SCN1A-222ENST00000642141 TMEM18Q96B42 140 aa6.43□□□□□ -1.38
SCN1A-222ENST00000642141 CAMK2N2Q96S95 79 aa6.43□□□□□ -1.38
SCN1A-222ENST00000642141 SMIM2Q9BVW6 85 aa6.43□□□□□ -1.38
SCN1A-222ENST00000642141 LOC389332A0A1B0GUA5 103 aa6.42□□□□□ -1.38
SCN1A-222ENST00000642141 SMIM6P0DI80 62 aa6.42□□□□□ -1.38
SCN1A-222ENST00000642141 PTTG1IPP53801 180 aa6.42□□□□□ -1.38
SCN1A-222ENST00000642141 TIMM21Q9BVV7 248 aa6.42□□□□□ -1.38
SCN1A-222ENST00000642141 CTDSP1Q9GZU7 261 aa6.42□□□□□ -1.38
SCN1A-222ENST00000642141 RPS10P5Q9NQ39 176 aa6.42□□□□□ -1.38
SCN1A-222ENST00000642141 LINC00474Q9P2X8 69 aa6.42□□□□□ -1.38
SCN1A-222ENST00000642141 UBR4Q5T4S7 5183 aa6.41□□□□□ -1.38
SCN1A-222ENST00000642141 LOC107984640A0A0U1RRK4 108 aa6.41□□□□□ -1.38
SCN1A-222ENST00000642141 A0A1W2PNN7 141 aa6.41□□□□□ -1.38
SCN1A-222ENST00000642141 RPL18AQ02543 176 aaKnown RBP6.41□□□□□ -1.38
SCN1A-222ENST00000642141 SPAG11BQ08648 103 aa6.41□□□□□ -1.38
SCN1A-222ENST00000642141 TMEM136Q6ZRR5 245 aa6.41□□□□□ -1.38
SCN1A-222ENST00000642141 PRELID3AQ96N28 172 aa6.41□□□□□ -1.38
SCN1A-222ENST00000642141 C5orf52A6NGY3 159 aa6.4□□□□□ -1.38
SCN1A-222ENST00000642141 IFITM10A6NMD0 228 aa6.4□□□□□ -1.38
SCN1A-222ENST00000642141 APOMO95445 188 aa6.4□□□□□ -1.38
SCN1A-222ENST00000642141 RAB5AP20339 215 aa6.4□□□□□ -1.38
SCN1A-222ENST00000642141 RPL32P62910 135 aaKnown RBP6.4□□□□□ -1.38
SCN1A-222ENST00000642141 CBLN2Q8IUK8 224 aa6.4□□□□□ -1.38
SCN1A-222ENST00000642141 ORMDL3Q8N138 153 aa6.4□□□□□ -1.38
SCN1A-222ENST00000642141 ORAOV1Q8WV07 137 aa6.4□□□□□ -1.38
SCN1A-222ENST00000642141 SPANXA1Q9NS26 97 aa6.4□□□□□ -1.38
SCN1A-222ENST00000642141 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-222ENST00000642141 PPBPP02775 128 aa6.39□□□□□ -1.39
SCN1A-222ENST00000642141 C10orf25Q5T742 122 aa6.39□□□□□ -1.39
SCN1A-222ENST00000642141 ZC2HC1BQ5TFG8 222 aa6.39□□□□□ -1.39
SCN1A-222ENST00000642141 PKIGQ9Y2B9 76 aa6.39□□□□□ -1.39
SCN1A-222ENST00000642141 IGHV3OR16-9A0A0B4J2B5 98 aa6.38□□□□□ -1.39
SCN1A-222ENST00000642141 C9orf116Q5BN46 136 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-222ENST00000642141 UNQ6190/PRO20217Q6UXQ8 127 aa6.38□□□□□ -1.39
SCN1A-222ENST00000642141 C2orf48Q96LS8 159 aa6.38□□□□□ -1.39
SCN1A-222ENST00000642141 FAM168BA1KXE4 195 aa6.37□□□□□ -1.39
SCN1A-222ENST00000642141 MRPS36P82909 103 aaKnown RBP6.37□□□□□ -1.39
SCN1A-222ENST00000642141 Q6ZRP5 223 aa6.37□□□□□ -1.39
SCN1A-222ENST00000642141 PHF5AQ7RTV0 110 aaKnown RBP6.37□□□□□ -1.39
SCN1A-222ENST00000642141 ATP5L2Q7Z4Y8 100 aa6.37□□□□□ -1.39
SCN1A-222ENST00000642141 YPEL4Q96NS1 127 aa6.37□□□□□ -1.39
SCN1A-222ENST00000642141 C12orf57Q99622 126 aa6.37□□□□□ -1.39
SCN1A-222ENST00000642141 TNXBP22105 4242 aa6.37□□□□□ -1.39
SCN1A-222ENST00000642141 IGLV4-3A0A075B6K6 122 aa6.36□□□□□ -1.39
SCN1A-222ENST00000642141 S100PP25815 95 aa6.36□□□□□ -1.39
SCN1A-222ENST00000642141 IFI27P40305 119 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-222ENST00000642141 OR10D4PQ8NGN7 298 aa6.36□□□□□ -1.39
SCN1A-222ENST00000642141 LINC01600Q96MT4 127 aa6.36□□□□□ -1.39
SCN1A-222ENST00000642141 MAP1LC3AQ9H492 121 aa6.36□□□□□ -1.39
SCN1A-222ENST00000642141 TGIF2-C20orf24A0A0A6YYL0 155 aa6.35□□□□□ -1.39
SCN1A-222ENST00000642141 NDUFA1O15239 70 aa6.35□□□□□ -1.39
SCN1A-222ENST00000642141 MT-ND6P03923 174 aa6.35□□□□□ -1.39
SCN1A-222ENST00000642141 AKR1D1P51857 326 aa6.35□□□□□ -1.39
SCN1A-222ENST00000642141 SRSF9Q13242 221 aaKnown RBP eCLIP6.35□□□□□ -1.39
SCN1A-222ENST00000642141 GAGE2EQ4V326 116 aa6.35□□□□□ -1.39
SCN1A-222ENST00000642141 LINC00242Q5T6M2 205 aa6.35□□□□□ -1.39
SCN1A-222ENST00000642141 SPINK6Q6UWN8 80 aa6.35□□□□□ -1.39
SCN1A-222ENST00000642141 C2orf82Q6UX34 121 aa6.35□□□□□ -1.39
SCN1A-222ENST00000642141 ANAPC16Q96DE5 110 aa6.35□□□□□ -1.39
SCN1A-222ENST00000642141 IMMP2LQ96T52 175 aa6.35□□□□□ -1.39
SCN1A-222ENST00000642141 GAGE2DQ9UEU5 116 aa6.35□□□□□ -1.39
SCN1A-222ENST00000642141 PSORS1C2Q9UIG4 136 aa6.35□□□□□ -1.39
SCN1A-222ENST00000642141 SNRPEP62304 92 aaKnown RBP6.34□□□□□ -1.39
SCN1A-222ENST00000642141 CTAG1AP78358 180 aa6.34□□□□□ -1.39
SCN1A-222ENST00000642141 RNF151Q2KHN1 245 aa6.34□□□□□ -1.39
SCN1A-222ENST00000642141 C1orf137Q5JT78 98 aa6.34□□□□□ -1.39
SCN1A-222ENST00000642141 REG3GQ6UW15 175 aa6.34□□□□□ -1.39
SCN1A-222ENST00000642141 FAM19A5Q7Z5A7 132 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-222ENST00000642141 TMEM141Q96I45 108 aa6.34□□□□□ -1.39
SCN1A-222ENST00000642141 MRPL35Q9NZE8 188 aaKnown RBP6.34□□□□□ -1.39
SCN1A-222ENST00000642141 C6orf48Q9UBA6 75 aa6.34□□□□□ -1.39
SCN1A-222ENST00000642141 TRAV9-1A0A075B6T8 112 aa6.33□□□□□ -1.4
SCN1A-222ENST00000642141 A0A087WZ39 114 aa6.33□□□□□ -1.4
SCN1A-222ENST00000642141 S100A2P29034 98 aa6.33□□□□□ -1.4
SCN1A-222ENST00000642141 KIAA1644Q3SXP7 199 aa6.33□□□□□ -1.4
SCN1A-222ENST00000642141 C2orf66Q6UXQ4 117 aa6.33□□□□□ -1.4
SCN1A-222ENST00000642141 TEX43Q6ZNM6 134 aa6.33□□□□□ -1.4
SCN1A-222ENST00000642141 KRTAP11-1Q8IUC1 163 aa6.33□□□□□ -1.4
SCN1A-222ENST00000642141 Q8N8P6 123 aa6.33□□□□□ -1.4
SCN1A-222ENST00000642141 VCX2Q9H322 139 aa6.33□□□□□ -1.4
SCN1A-222ENST00000642141 CYSLTR1Q9Y271 337 aa6.33□□□□□ -1.4
SCN1A-222ENST00000642141 PYGO1Q9Y3Y4 419 aa6.33□□□□□ -1.4
SCN1A-222ENST00000642141 UBE2D1P51668 147 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms