RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-216ENST00000601816 SPAG11BQ08648 103 aa16.35■□□□□ 0.21
PNKP-216ENST00000601816 CLLU1Q5K131 121 aa16.35■□□□□ 0.21
PNKP-216ENST00000601816 IFI27P40305 119 aaPredicted RBP16.34■□□□□ 0.21
PNKP-216ENST00000601816 MAP1LC3AQ9H492 121 aa16.34■□□□□ 0.21
PNKP-216ENST00000601816 PTTG1IPP53801 180 aa16.33■□□□□ 0.2
PNKP-216ENST00000601816 LOC389332A0A1B0GUA5 103 aa16.32■□□□□ 0.2
PNKP-216ENST00000601816 PRSS47A8MTI9 375 aa16.32■□□□□ 0.2
PNKP-216ENST00000601816 GAGE2BQ13066 116 aa16.32■□□□□ 0.2
PNKP-216ENST00000601816 SERTAD4-AS1Q5TG53 156 aa16.32■□□□□ 0.2
PNKP-216ENST00000601816 OR10D4PQ8NGN7 298 aa16.32■□□□□ 0.2
PNKP-216ENST00000601816 IGHV3OR16-9A0A0B4J2B5 98 aa16.31■□□□□ 0.2
PNKP-216ENST00000601816 PRR3P79522 188 aaKnown RBP16.31■□□□□ 0.2
PNKP-216ENST00000601816 PYGO1Q9Y3Y4 419 aa16.31■□□□□ 0.2
PNKP-216ENST00000601816 ORAOV1Q8WV07 137 aa16.3■□□□□ 0.2
PNKP-216ENST00000601816 IGLV4-3A0A075B6K6 122 aa16.27■□□□□ 0.2
PNKP-216ENST00000601816 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP16.27■□□□□ 0.2
PNKP-216ENST00000601816 Q8N8P6 123 aa16.27■□□□□ 0.2
PNKP-216ENST00000601816 TGIF2-C20orf24A0A0A6YYL0 155 aa16.26■□□□□ 0.19
PNKP-216ENST00000601816 TMEM141Q96I45 108 aa16.26■□□□□ 0.19
PNKP-216ENST00000601816 F8WDY8 70 aa16.25■□□□□ 0.19
PNKP-216ENST00000601816 RPL18AQ02543 176 aaKnown RBP16.25■□□□□ 0.19
PNKP-216ENST00000601816 RNF151Q2KHN1 245 aa16.25■□□□□ 0.19
PNKP-216ENST00000601816 UQCC3Q6UW78 93 aa16.25■□□□□ 0.19
PNKP-216ENST00000601816 CTDSP1Q9GZU7 261 aa16.25■□□□□ 0.19
PNKP-216ENST00000601816 CYSLTR1Q9Y271 337 aa16.25■□□□□ 0.19
PNKP-216ENST00000601816 A0A0J9YXV3 536 aa16.24■□□□□ 0.19
PNKP-216ENST00000601816 IMMP2LQ96T52 175 aa16.24■□□□□ 0.19
PNKP-216ENST00000601816 MRPL35Q9NZE8 188 aaKnown RBP16.24■□□□□ 0.19
PNKP-216ENST00000601816 MT1HL1P0DM35 61 aa16.23■□□□□ 0.19
PNKP-216ENST00000601816 ADCYAP1P18509 176 aa16.23■□□□□ 0.19
PNKP-216ENST00000601816 TEX43Q6ZNM6 134 aa16.23■□□□□ 0.19
PNKP-216ENST00000601816 NDUFA1O15239 70 aa16.22■□□□□ 0.19
PNKP-216ENST00000601816 ORMDL2Q53FV1 153 aa16.22■□□□□ 0.19
PNKP-216ENST00000601816 LINC00242Q5T6M2 205 aa16.22■□□□□ 0.19
PNKP-216ENST00000601816 C2orf66Q6UXQ4 117 aa16.22■□□□□ 0.19
PNKP-216ENST00000601816 A0A087WZ39 114 aa16.21■□□□□ 0.19
PNKP-216ENST00000601816 A0A1W2PNN7 141 aa16.21■□□□□ 0.19
PNKP-216ENST00000601816 TMEM218A2RU14 115 aa16.21■□□□□ 0.19
PNKP-216ENST00000601816 Q6ZN92 141 aa16.21■□□□□ 0.19
PNKP-216ENST00000601816 C2orf88Q9BSF0 95 aa16.21■□□□□ 0.19
PNKP-216ENST00000601816 K7EMI3 77 aa16.2■□□□□ 0.18
PNKP-216ENST00000601816 IFITM2Q01629 132 aa16.2■□□□□ 0.18
PNKP-216ENST00000601816 Q6ZRP5 223 aa16.2■□□□□ 0.18
PNKP-216ENST00000601816 NXT2Q9NPJ8 142 aaKnown RBP16.2■□□□□ 0.18
PNKP-216ENST00000601816 C9orf116Q5BN46 136 aaPredicted RBP16.19■□□□□ 0.18
PNKP-216ENST00000601816 UBE2D1P51668 147 aa16.18■□□□□ 0.18
PNKP-216ENST00000601816 C10orf25Q5T742 122 aa16.17■□□□□ 0.18
PNKP-216ENST00000601816 UNQ6190/PRO20217Q6UXQ8 127 aa16.17■□□□□ 0.18
PNKP-216ENST00000601816 VCX2Q9H322 139 aa16.17■□□□□ 0.18
PNKP-216ENST00000601816 HMCN2Q8NDA2 5059 aa16.17■□□□□ 0.18
PNKP-216ENST00000601816 TRAV9-1A0A075B6T8 112 aa16.16■□□□□ 0.18
PNKP-216ENST00000601816 PLA2G2DQ9UNK4 145 aa16.16■□□□□ 0.18
PNKP-216ENST00000601816 NPSP0C0P6 89 aa16.15■□□□□ 0.18
PNKP-216ENST00000601816 ZC2HC1BQ5TFG8 222 aa16.15■□□□□ 0.18
PNKP-216ENST00000601816 SPINK6Q6UWN8 80 aa16.15■□□□□ 0.18
PNKP-216ENST00000601816 LINC00173Q6ZV60 143 aa16.15■□□□□ 0.18
PNKP-216ENST00000601816 AMELXQ99217 191 aa16.15■□□□□ 0.18
PNKP-216ENST00000601816 C6orf48Q9UBA6 75 aa16.15■□□□□ 0.18
PNKP-216ENST00000601816 IGIPA6NJ69 53 aa16.14■□□□□ 0.17
PNKP-216ENST00000601816 KIAA0087Q14695 138 aa16.14■□□□□ 0.17
PNKP-216ENST00000601816 KIAA1644Q3SXP7 199 aa16.14■□□□□ 0.17
PNKP-216ENST00000601816 TLX1NBP0CAT3 122 aa16.13■□□□□ 0.17
PNKP-216ENST00000601816 G0S2P27469 103 aa16.13■□□□□ 0.17
PNKP-216ENST00000601816 LINC01561Q8N1V8 128 aa16.13■□□□□ 0.17
PNKP-216ENST00000601816 SEC11CQ9BY50 192 aa16.13■□□□□ 0.17
PNKP-216ENST00000601816 S100PP25815 95 aa16.12■□□□□ 0.17
PNKP-216ENST00000601816 PAPPA-AS1Q5QFB9 102 aa16.1■□□□□ 0.17
PNKP-216ENST00000601816 PHF5AQ7RTV0 110 aaKnown RBP16.1■□□□□ 0.17
PNKP-216ENST00000601816 LINC01600Q96MT4 127 aa16.1■□□□□ 0.17
PNKP-216ENST00000601816 SRSF9Q13242 221 aaKnown RBP eCLIP16.09■□□□□ 0.17
PNKP-216ENST00000601816 REG3GQ6UW15 175 aa16.09■□□□□ 0.17
PNKP-216ENST00000601816 COMMD7Q86VX2 200 aa16.09■□□□□ 0.17
PNKP-216ENST00000601816 TRBV30A0A0K0K1B3 111 aa16.08■□□□□ 0.16
PNKP-216ENST00000601816 MT-ND6P03923 174 aa16.08■□□□□ 0.16
PNKP-216ENST00000601816 C2orf82Q6UX34 121 aa16.08■□□□□ 0.16
PNKP-216ENST00000601816 PSORS1C2Q9UIG4 136 aa16.08■□□□□ 0.16
PNKP-216ENST00000601816 GAGE2EQ4V326 116 aa16.07■□□□□ 0.16
PNKP-216ENST00000601816 TOMM6Q96B49 74 aa16.07■□□□□ 0.16
PNKP-216ENST00000601816 PACRGQ96M98 296 aaPredicted RBP16.07■□□□□ 0.16
PNKP-216ENST00000601816 TIMM17AQ99595 171 aa16.07■□□□□ 0.16
PNKP-216ENST00000601816 GNB1LQ9BYB4 327 aa16.07■□□□□ 0.16
PNKP-216ENST00000601816 GAGE2DQ9UEU5 116 aa16.07■□□□□ 0.16
PNKP-216ENST00000601816 FAM19A3Q7Z5A8 133 aa16.06■□□□□ 0.16
PNKP-216ENST00000601816 FAM168BA1KXE4 195 aa16.05■□□□□ 0.16
PNKP-216ENST00000601816 PRSS2P07478 247 aa16.05■□□□□ 0.16
PNKP-216ENST00000601816 SEC11AP67812 179 aa16.05■□□□□ 0.16
PNKP-216ENST00000601816 HERVK_113P63121 156 aa16.04■□□□□ 0.16
PNKP-216ENST00000601816 TOMM7Q9P0U1 55 aa16.04■□□□□ 0.16
PNKP-216ENST00000601816 TNXBP22105 4242 aa16.04■□□□□ 0.16
PNKP-216ENST00000601816 FAM19A5Q7Z5A7 132 aaPredicted RBP16.03■□□□□ 0.16
PNKP-216ENST00000601816 GEMIN7Q9H840 131 aaKnown RBP16.03■□□□□ 0.16
PNKP-216ENST00000601816 NDUFC2-KCTD14E9PQ53 114 aa16.02■□□□□ 0.16
PNKP-216ENST00000601816 COX19Q49B96 90 aa16.02■□□□□ 0.16
PNKP-216ENST00000601816 C1orf137Q5JT78 98 aa16.02■□□□□ 0.16
PNKP-216ENST00000601816 ERASQ7Z444 233 aa16.02■□□□□ 0.16
PNKP-216ENST00000601816 SCGB3A1Q96QR1 104 aa16.02■□□□□ 0.16
PNKP-216ENST00000601816 ALKBH7Q9BT30 221 aaPredicted RBP16.02■□□□□ 0.16
PNKP-216ENST00000601816 CKS1BP61024 79 aa16.01■□□□□ 0.15
PNKP-216ENST00000601816 C6orf226Q5I0X4 101 aa16■□□□□ 0.15
PNKP-216ENST00000601816 Q8IZM0 81 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms