RNA–Protein interactions for RNA: ENST00000600236.1

HIF3A-217, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 313 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-217ENST00000600236 HERC1Q15751 4861 aa7.4□□□□□ -1.23
HIF3A-217ENST00000600236 IGLV10-54A0A075B6I4 117 aa7.39□□□□□ -1.23
HIF3A-217ENST00000600236 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.39□□□□□ -1.23
HIF3A-217ENST00000600236 TRAV26-2A0A0B4J265 109 aa7.39□□□□□ -1.23
HIF3A-217ENST00000600236 TRBV6-5A0A0K0K1A5 114 aa7.39□□□□□ -1.23
HIF3A-217ENST00000600236 PCP4L1A6NKN8 68 aa7.39□□□□□ -1.23
HIF3A-217ENST00000600236 TSTD3H0UI37 97 aa7.39□□□□□ -1.23
HIF3A-217ENST00000600236 SYS1-DBNDD2H3BUS1 97 aa7.39□□□□□ -1.23
HIF3A-217ENST00000600236 FCER1GP30273 86 aa7.39□□□□□ -1.23
HIF3A-217ENST00000600236 LINC00173Q6ZV60 143 aa7.39□□□□□ -1.23
HIF3A-217ENST00000600236 ZNF664Q8N3J9 261 aa7.39□□□□□ -1.23
HIF3A-217ENST00000600236 C20orf203Q8NBC4 194 aa7.39□□□□□ -1.23
HIF3A-217ENST00000600236 hDV102S1A0JD36 115 aa7.38□□□□□ -1.23
HIF3A-217ENST00000600236 C20orf202A1L168 122 aa7.38□□□□□ -1.23
HIF3A-217ENST00000600236 SUMO2P61956 95 aaKnown RBP7.38□□□□□ -1.23
HIF3A-217ENST00000600236 CNBPP62633 177 aaKnown RBP7.38□□□□□ -1.23
HIF3A-217ENST00000600236 SERTAD4-AS1Q5TG53 156 aa7.38□□□□□ -1.23
HIF3A-217ENST00000600236 KRTAP26-1Q6PEX3 210 aa7.38□□□□□ -1.23
HIF3A-217ENST00000600236 MAP1LC3CQ9BXW4 147 aa7.38□□□□□ -1.23
HIF3A-217ENST00000600236 KRTAP10-4P60372 401 aaPredicted RBP7.37□□□□□ -1.23
HIF3A-217ENST00000600236 LINC01545Q5VT33 79 aa7.37□□□□□ -1.23
HIF3A-217ENST00000600236 VAMP8Q9BV40 100 aa7.37□□□□□ -1.23
HIF3A-217ENST00000600236 IGLV4-60A0A075B6I1 120 aa7.36□□□□□ -1.23
HIF3A-217ENST00000600236 ORMDL2Q53FV1 153 aa7.36□□□□□ -1.23
HIF3A-217ENST00000600236 CFAP161Q6P656 301 aa7.36□□□□□ -1.23
HIF3A-217ENST00000600236 RPL39LQ96EH5 51 aaKnown RBP7.36□□□□□ -1.23
HIF3A-217ENST00000600236 DPH3Q96FX2 82 aa7.36□□□□□ -1.23
HIF3A-217ENST00000600236 MYCBP2O75592 4640 aa7.36□□□□□ -1.23
HIF3A-217ENST00000600236 IGHV3-64A0A075B6Q5 118 aa7.35□□□□□ -1.23
HIF3A-217ENST00000600236 LINC01549A6NIU2 74 aa7.35□□□□□ -1.23
HIF3A-217ENST00000600236 LINC00587B1AMM8 73 aa7.35□□□□□ -1.23
HIF3A-217ENST00000600236 POLR2KP53803 58 aaKnown RBP7.35□□□□□ -1.23
HIF3A-217ENST00000600236 AMMECR1LQ6DCA0 310 aa7.35□□□□□ -1.23
HIF3A-217ENST00000600236 SDIM1Q6ZPB5 146 aa7.35□□□□□ -1.23
HIF3A-217ENST00000600236 IFI27L1Q96BM0 104 aa7.35□□□□□ -1.23
HIF3A-217ENST00000600236 ST20Q9HBF5 79 aa7.35□□□□□ -1.23
HIF3A-217ENST00000600236 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.35□□□□□ -1.23
HIF3A-217ENST00000600236 VPS13BQ7Z7G8 4022 aa7.35□□□□□ -1.23
HIF3A-217ENST00000600236 TRBV27A0A0K0K1C4 114 aa7.34□□□□□ -1.23
HIF3A-217ENST00000600236 H7C423 109 aa7.34□□□□□ -1.23
HIF3A-217ENST00000600236 ATP5LO75964 103 aa7.34□□□□□ -1.23
HIF3A-217ENST00000600236 DDTP30046 118 aa7.34□□□□□ -1.23
HIF3A-217ENST00000600236 PRO1933Q9H354 126 aa7.34□□□□□ -1.23
HIF3A-217ENST00000600236 IGKV3OR2-268A0A0C4DH90 116 aa7.33□□□□□ -1.24
HIF3A-217ENST00000600236 VCYO14598 125 aa7.33□□□□□ -1.24
HIF3A-217ENST00000600236 TCAPO15273 167 aa7.33□□□□□ -1.24
HIF3A-217ENST00000600236 G0S2P27469 103 aa7.33□□□□□ -1.24
HIF3A-217ENST00000600236 PAM16Q9Y3D7 125 aa7.33□□□□□ -1.24
HIF3A-217ENST00000600236 GAGE12HA6NDE8 117 aa7.32□□□□□ -1.24
HIF3A-217ENST00000600236 CIRBPQ14011 172 aaKnown RBP7.32□□□□□ -1.24
HIF3A-217ENST00000600236 SPATA45Q537H7 98 aa7.32□□□□□ -1.24
HIF3A-217ENST00000600236 TOMM6Q96B49 74 aa7.32□□□□□ -1.24
HIF3A-217ENST00000600236 SDHAF1A6NFY7 115 aa7.31□□□□□ -1.24
HIF3A-217ENST00000600236 ZNF25P17030 456 aaPredicted RBP7.31□□□□□ -1.24
HIF3A-217ENST00000600236 TMEM101Q96IK0 257 aa7.31□□□□□ -1.24
HIF3A-217ENST00000600236 MIEN1Q9BRT3 115 aa7.31□□□□□ -1.24
HIF3A-217ENST00000600236 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.3□□□□□ -1.24
HIF3A-217ENST00000600236 IGKV2-29A2NJV5 120 aaPredicted RBP7.3□□□□□ -1.24
HIF3A-217ENST00000600236 PANO1I0J062 215 aa7.3□□□□□ -1.24
HIF3A-217ENST00000600236 I3L3M4 83 aa7.3□□□□□ -1.24
HIF3A-217ENST00000600236 IGLC3P0DOY3 106 aa7.3□□□□□ -1.24
HIF3A-217ENST00000600236 FGF6P10767 208 aa7.3□□□□□ -1.24
HIF3A-217ENST00000600236 MRPL52Q86TS9 123 aaKnown RBP7.3□□□□□ -1.24
HIF3A-217ENST00000600236 SPACA4Q8TDM5 124 aa7.3□□□□□ -1.24
HIF3A-217ENST00000600236 C7orf33Q8WU49 177 aa7.3□□□□□ -1.24
HIF3A-217ENST00000600236 CHCHD10Q8WYQ3 142 aaPredicted RBP7.3□□□□□ -1.24
HIF3A-217ENST00000600236 KIR2DL4Q99706 377 aa7.3□□□□□ -1.24
HIF3A-217ENST00000600236 PKIGQ9Y2B9 76 aa7.3□□□□□ -1.24
HIF3A-217ENST00000600236 A0A087WYN8 130 aa7.29□□□□□ -1.24
HIF3A-217ENST00000600236 TRAV12-1A0A0B4J245 112 aa7.29□□□□□ -1.24
HIF3A-217ENST00000600236 ODF1Q14990 250 aa7.29□□□□□ -1.24
HIF3A-217ENST00000600236 C2orf66Q6UXQ4 117 aa7.29□□□□□ -1.24
HIF3A-217ENST00000600236 Q6ZRU5 148 aa7.29□□□□□ -1.24
HIF3A-217ENST00000600236 ATOH7Q8N100 152 aa7.29□□□□□ -1.24
HIF3A-217ENST00000600236 C15orf56Q8N910 161 aa7.29□□□□□ -1.24
HIF3A-217ENST00000600236 PLA2G2DQ9UNK4 145 aa7.29□□□□□ -1.24
HIF3A-217ENST00000600236 CYSLTR1Q9Y271 337 aa7.29□□□□□ -1.24
HIF3A-217ENST00000600236 HSBP1L1C9JCN9 74 aa7.28□□□□□ -1.24
HIF3A-217ENST00000600236 TSHBP01222 138 aa7.28□□□□□ -1.24
HIF3A-217ENST00000600236 SLPIP03973 132 aa7.28□□□□□ -1.24
HIF3A-217ENST00000600236 CHTF8P0CG12 524 aa7.28□□□□□ -1.24
HIF3A-217ENST00000600236 HNRNPA3P51991 378 aaKnown RBP7.28□□□□□ -1.24
HIF3A-217ENST00000600236 HIGD2BQ4VC39 106 aa7.28□□□□□ -1.24
HIF3A-217ENST00000600236 ERASQ7Z444 233 aa7.28□□□□□ -1.24
HIF3A-217ENST00000600236 OR5A1Q8NGJ0 315 aa7.28□□□□□ -1.24
HIF3A-217ENST00000600236 UQCR10Q9UDW1 63 aa7.28□□□□□ -1.24
HIF3A-217ENST00000600236 GVQW2A0A096LPI5 108 aaPredicted RBP7.27□□□□□ -1.25
HIF3A-217ENST00000600236 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.27□□□□□ -1.25
HIF3A-217ENST00000600236 COX6A2Q02221 97 aa7.27□□□□□ -1.25
HIF3A-217ENST00000600236 MAJINQ3KP22 176 aa7.27□□□□□ -1.25
HIF3A-217ENST00000600236 TMEM141Q96I45 108 aa7.27□□□□□ -1.25
HIF3A-217ENST00000600236 C14orf144Q96I85 54 aa7.27□□□□□ -1.25
HIF3A-217ENST00000600236 SCGB3A1Q96QR1 104 aa7.27□□□□□ -1.25
HIF3A-217ENST00000600236 TIMM17AQ99595 171 aa7.27□□□□□ -1.25
HIF3A-217ENST00000600236 PLAC8Q9NZF1 115 aa7.27□□□□□ -1.25
HIF3A-217ENST00000600236 SRRM2Q9UQ35 2752 aaKnown RBP7.27□□□□□ -1.25
HIF3A-217ENST00000600236 IGIPA6NJ69 53 aa7.26□□□□□ -1.25
HIF3A-217ENST00000600236 H0Y8G0 127 aa7.26□□□□□ -1.25
HIF3A-217ENST00000600236 SS18Q15532 418 aa7.26□□□□□ -1.25
HIF3A-217ENST00000600236 PMCHL2Q9BQD1 86 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms