RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 IFITM2Q01629 132 aa9.65□□□□□ -0.86
TRIM28-203ENST00000593582 FAM104AQ969W3 186 aa9.65□□□□□ -0.86
TRIM28-203ENST00000593582 C2orf48Q96LS8 159 aa9.64□□□□□ -0.87
TRIM28-203ENST00000593582 CAMK2N2Q96S95 79 aa9.64□□□□□ -0.87
TRIM28-203ENST00000593582 CTDSP1Q9GZU7 261 aa9.64□□□□□ -0.87
TRIM28-203ENST00000593582 PYGO1Q9Y3Y4 419 aa9.64□□□□□ -0.87
TRIM28-203ENST00000593582 ADCYAP1P18509 176 aa9.63□□□□□ -0.87
TRIM28-203ENST00000593582 HNRNPA3P51991 378 aaKnown RBP9.63□□□□□ -0.87
TRIM28-203ENST00000593582 SPAG11BQ08648 103 aa9.63□□□□□ -0.87
TRIM28-203ENST00000593582 Q8N8P6 123 aa9.63□□□□□ -0.87
TRIM28-203ENST00000593582 IGHV3OR16-9A0A0B4J2B5 98 aa9.62□□□□□ -0.87
TRIM28-203ENST00000593582 Q6ZRU5 148 aa9.62□□□□□ -0.87
TRIM28-203ENST00000593582 OR10D4PQ8NGN7 298 aa9.62□□□□□ -0.87
TRIM28-203ENST00000593582 IGLV4-3A0A075B6K6 122 aa9.61□□□□□ -0.87
TRIM28-203ENST00000593582 LOC107984640A0A0U1RRK4 108 aa9.61□□□□□ -0.87
TRIM28-203ENST00000593582 ORMDL2Q53FV1 153 aa9.61□□□□□ -0.87
TRIM28-203ENST00000593582 TMEM141Q96I45 108 aa9.61□□□□□ -0.87
TRIM28-203ENST00000593582 SEC11CQ9BY50 192 aa9.61□□□□□ -0.87
TRIM28-203ENST00000593582 CYSLTR1Q9Y271 337 aa9.61□□□□□ -0.87
TRIM28-203ENST00000593582 FAT3Q8TDW7 4589 aa9.61□□□□□ -0.87
TRIM28-203ENST00000593582 TRAV9-1A0A075B6T8 112 aa9.6□□□□□ -0.87
TRIM28-203ENST00000593582 TGIF2-C20orf24A0A0A6YYL0 155 aa9.6□□□□□ -0.87
TRIM28-203ENST00000593582 K7EMI3 77 aa9.6□□□□□ -0.87
TRIM28-203ENST00000593582 PTTG1IPP53801 180 aa9.6□□□□□ -0.87
TRIM28-203ENST00000593582 GAGE2BQ13066 116 aa9.6□□□□□ -0.87
TRIM28-203ENST00000593582 ORAOV1Q8WV07 137 aa9.6□□□□□ -0.87
TRIM28-203ENST00000593582 PKHD1L1Q86WI1 4243 aa9.6□□□□□ -0.87
TRIM28-203ENST00000593582 S100PP25815 95 aa9.59□□□□□ -0.87
TRIM28-203ENST00000593582 C2orf66Q6UXQ4 117 aa9.59□□□□□ -0.87
TRIM28-203ENST00000593582 Q6ZN92 141 aa9.59□□□□□ -0.87
TRIM28-203ENST00000593582 TEX43Q6ZNM6 134 aa9.59□□□□□ -0.87
TRIM28-203ENST00000593582 C2orf88Q9BSF0 95 aa9.59□□□□□ -0.87
TRIM28-203ENST00000593582 NXT2Q9NPJ8 142 aaKnown RBP9.59□□□□□ -0.87
TRIM28-203ENST00000593582 F8WDY8 70 aa9.58□□□□□ -0.88
TRIM28-203ENST00000593582 COMMD7Q86VX2 200 aa9.58□□□□□ -0.88
TRIM28-203ENST00000593582 A0A087WZ39 114 aa9.57□□□□□ -0.88
TRIM28-203ENST00000593582 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.57□□□□□ -0.88
TRIM28-203ENST00000593582 G0S2P27469 103 aa9.57□□□□□ -0.88
TRIM28-203ENST00000593582 RPL18AQ02543 176 aaKnown RBP9.57□□□□□ -0.88
TRIM28-203ENST00000593582 RNF151Q2KHN1 245 aa9.57□□□□□ -0.88
TRIM28-203ENST00000593582 LINC00242Q5T6M2 205 aa9.57□□□□□ -0.88
TRIM28-203ENST00000593582 VCX2Q9H322 139 aa9.57□□□□□ -0.88
TRIM28-203ENST00000593582 NDUFA1O15239 70 aa9.56□□□□□ -0.88
TRIM28-203ENST00000593582 NPSP0C0P6 89 aa9.56□□□□□ -0.88
TRIM28-203ENST00000593582 PRR3P79522 188 aaKnown RBP9.56□□□□□ -0.88
TRIM28-203ENST00000593582 KIAA1644Q3SXP7 199 aa9.56□□□□□ -0.88
TRIM28-203ENST00000593582 MRPL35Q9NZE8 188 aaKnown RBP9.56□□□□□ -0.88
TRIM28-203ENST00000593582 UBE2D1P51668 147 aa9.55□□□□□ -0.88
TRIM28-203ENST00000593582 A0A0J9YXV3 536 aa9.54□□□□□ -0.88
TRIM28-203ENST00000593582 IGIPA6NJ69 53 aa9.54□□□□□ -0.88
TRIM28-203ENST00000593582 PAPPA-AS1Q5QFB9 102 aa9.54□□□□□ -0.88
TRIM28-203ENST00000593582 AMELXQ99217 191 aa9.54□□□□□ -0.88
TRIM28-203ENST00000593582 GNB1LQ9BYB4 327 aa9.54□□□□□ -0.88
TRIM28-203ENST00000593582 ZC2HC1BQ5TFG8 222 aa9.53□□□□□ -0.88
TRIM28-203ENST00000593582 LINC00173Q6ZV60 143 aa9.53□□□□□ -0.88
TRIM28-203ENST00000593582 A0A1W2PNN7 141 aa9.52□□□□□ -0.89
TRIM28-203ENST00000593582 RHEBQ15382 184 aa9.52□□□□□ -0.89
TRIM28-203ENST00000593582 COX19Q49B96 90 aa9.52□□□□□ -0.89
TRIM28-203ENST00000593582 C9orf116Q5BN46 136 aaPredicted RBP9.52□□□□□ -0.89
TRIM28-203ENST00000593582 C10orf91Q5T1B1 145 aa9.52□□□□□ -0.89
TRIM28-203ENST00000593582 C10orf25Q5T742 122 aa9.52□□□□□ -0.89
TRIM28-203ENST00000593582 SERTAD4-AS1Q5TG53 156 aa9.52□□□□□ -0.89
TRIM28-203ENST00000593582 UNQ6190/PRO20217Q6UXQ8 127 aa9.52□□□□□ -0.89
TRIM28-203ENST00000593582 Q6ZRP5 223 aa9.52□□□□□ -0.89
TRIM28-203ENST00000593582 LINC01561Q8N1V8 128 aa9.52□□□□□ -0.89
TRIM28-203ENST00000593582 TOMM6Q96B49 74 aa9.52□□□□□ -0.89
TRIM28-203ENST00000593582 KIAA0087Q14695 138 aa9.51□□□□□ -0.89
TRIM28-203ENST00000593582 TIMM17AQ99595 171 aa9.51□□□□□ -0.89
TRIM28-203ENST00000593582 RPS10P5Q9NQ39 176 aa9.51□□□□□ -0.89
TRIM28-203ENST00000593582 CARHSP1Q9Y2V2 147 aaKnown RBP9.51□□□□□ -0.89
TRIM28-203ENST00000593582 MT-ND6P03923 174 aa9.5□□□□□ -0.89
TRIM28-203ENST00000593582 TLX1NBP0CAT3 122 aa9.5□□□□□ -0.89
TRIM28-203ENST00000593582 SEC11AP67812 179 aa9.5□□□□□ -0.89
TRIM28-203ENST00000593582 ALKBH7Q9BT30 221 aaPredicted RBP9.5□□□□□ -0.89
TRIM28-203ENST00000593582 C6orf48Q9UBA6 75 aa9.5□□□□□ -0.89
TRIM28-203ENST00000593582 TRBV30A0A0K0K1B3 111 aa9.49□□□□□ -0.89
TRIM28-203ENST00000593582 HERVK_113P63121 156 aa9.49□□□□□ -0.89
TRIM28-203ENST00000593582 ERASQ7Z444 233 aa9.49□□□□□ -0.89
TRIM28-203ENST00000593582 FAM19A3Q7Z5A8 133 aa9.49□□□□□ -0.89
TRIM28-203ENST00000593582 SCGB3A1Q96QR1 104 aa9.49□□□□□ -0.89
TRIM28-203ENST00000593582 PRSS2P07478 247 aa9.48□□□□□ -0.89
TRIM28-203ENST00000593582 FABP9Q0Z7S8 132 aa9.48□□□□□ -0.89
TRIM28-203ENST00000593582 PACRGQ96M98 296 aaPredicted RBP9.48□□□□□ -0.89
TRIM28-203ENST00000593582 MRPL18Q9H0U6 180 aaKnown RBP9.48□□□□□ -0.89
TRIM28-203ENST00000593582 GEMIN7Q9H840 131 aaKnown RBP9.48□□□□□ -0.89
TRIM28-203ENST00000593582 LINC01546A6NGU7 62 aa9.47□□□□□ -0.89
TRIM28-203ENST00000593582 LINC01549A6NIU2 74 aa9.47□□□□□ -0.89
TRIM28-203ENST00000593582 CKS1BP61024 79 aa9.47□□□□□ -0.89
TRIM28-203ENST00000593582 GAGE2EQ4V326 116 aa9.47□□□□□ -0.89
TRIM28-203ENST00000593582 SPINK6Q6UWN8 80 aa9.47□□□□□ -0.89
TRIM28-203ENST00000593582 C2orf82Q6UX34 121 aa9.47□□□□□ -0.89
TRIM28-203ENST00000593582 GAGE2DQ9UEU5 116 aa9.47□□□□□ -0.89
TRIM28-203ENST00000593582 MT1HL1P0DM35 61 aa9.46□□□□□ -0.9
TRIM28-203ENST00000593582 C6orf226Q5I0X4 101 aa9.46□□□□□ -0.9
TRIM28-203ENST00000593582 FA2HQ7L5A8 372 aa9.46□□□□□ -0.9
TRIM28-203ENST00000593582 SMCO4Q9NRQ5 59 aa9.46□□□□□ -0.9
TRIM28-203ENST00000593582 TOMM7Q9P0U1 55 aa9.46□□□□□ -0.9
TRIM28-203ENST00000593582 NDUFC2-KCTD14E9PQ53 114 aa9.45□□□□□ -0.9
TRIM28-203ENST00000593582 PHF5AQ7RTV0 110 aaKnown RBP9.45□□□□□ -0.9
TRIM28-203ENST00000593582 Q8IZM0 81 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 90.9 ms