RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 C5orf38Q86SI9 138 aa6.98□□□□□ -1.29
LIG3-214ENST00000592244 STPG4Q8N801 248 aa6.98□□□□□ -1.29
LIG3-214ENST00000592244 OR10D4PQ8NGN7 298 aa6.98□□□□□ -1.29
LIG3-214ENST00000592244 C2orf48Q96LS8 159 aa6.98□□□□□ -1.29
LIG3-214ENST00000592244 C2orf88Q9BSF0 95 aa6.98□□□□□ -1.29
LIG3-214ENST00000592244 PYGO1Q9Y3Y4 419 aa6.98□□□□□ -1.29
LIG3-214ENST00000592244 MYCBP2O75592 4640 aa6.97□□□□□ -1.29
LIG3-214ENST00000592244 TGIF2-C20orf24A0A0A6YYL0 155 aa6.97□□□□□ -1.29
LIG3-214ENST00000592244 LOC107984640A0A0U1RRK4 108 aa6.97□□□□□ -1.29
LIG3-214ENST00000592244 LOC389332A0A1B0GUA5 103 aa6.97□□□□□ -1.29
LIG3-214ENST00000592244 PRSS47A8MTI9 375 aa6.97□□□□□ -1.29
LIG3-214ENST00000592244 S100PP25815 95 aa6.97□□□□□ -1.29
LIG3-214ENST00000592244 KRTAP10-4P60372 401 aaPredicted RBP6.97□□□□□ -1.29
LIG3-214ENST00000592244 ORMDL2Q53FV1 153 aa6.97□□□□□ -1.29
LIG3-214ENST00000592244 NXT2Q9NPJ8 142 aaKnown RBP6.97□□□□□ -1.29
LIG3-214ENST00000592244 CYSLTR1Q9Y271 337 aa6.97□□□□□ -1.29
LIG3-214ENST00000592244 TRAV9-1A0A075B6T8 112 aa6.96□□□□□ -1.3
LIG3-214ENST00000592244 A0A096LNI7 61 aa6.96□□□□□ -1.3
LIG3-214ENST00000592244 TMEM218A2RU14 115 aa6.96□□□□□ -1.3
LIG3-214ENST00000592244 SPAG11BQ08648 103 aa6.96□□□□□ -1.3
LIG3-214ENST00000592244 C21orf62-AS1Q17RA5 79 aa6.96□□□□□ -1.3
LIG3-214ENST00000592244 PAPPA-AS1Q5QFB9 102 aa6.96□□□□□ -1.3
LIG3-214ENST00000592244 TEX43Q6ZNM6 134 aa6.96□□□□□ -1.3
LIG3-214ENST00000592244 Q8N8P6 123 aa6.96□□□□□ -1.3
LIG3-214ENST00000592244 LINC00526Q96FQ7 95 aa6.96□□□□□ -1.3
LIG3-214ENST00000592244 TMEM141Q96I45 108 aa6.96□□□□□ -1.3
LIG3-214ENST00000592244 NPSP0C0P6 89 aa6.95□□□□□ -1.3
LIG3-214ENST00000592244 RNF151Q2KHN1 245 aa6.95□□□□□ -1.3
LIG3-214ENST00000592244 LCE2DQ5TA82 110 aaPredicted RBP6.95□□□□□ -1.3
LIG3-214ENST00000592244 Q6ZRU5 148 aa6.95□□□□□ -1.3
LIG3-214ENST00000592244 ORAOV1Q8WV07 137 aa6.95□□□□□ -1.3
LIG3-214ENST00000592244 IGHV3OR16-9A0A0B4J2B5 98 aa6.94□□□□□ -1.3
LIG3-214ENST00000592244 GHRHP01286 108 aa6.94□□□□□ -1.3
LIG3-214ENST00000592244 PTTG1IPP53801 180 aa6.94□□□□□ -1.3
LIG3-214ENST00000592244 GAGE2BQ13066 116 aa6.94□□□□□ -1.3
LIG3-214ENST00000592244 COX19Q49B96 90 aa6.94□□□□□ -1.3
LIG3-214ENST00000592244 SEC11CQ9BY50 192 aa6.94□□□□□ -1.3
LIG3-214ENST00000592244 VCX2Q9H322 139 aa6.94□□□□□ -1.3
LIG3-214ENST00000592244 IGLV4-3A0A075B6K6 122 aa6.93□□□□□ -1.3
LIG3-214ENST00000592244 LINC01549A6NIU2 74 aa6.93□□□□□ -1.3
LIG3-214ENST00000592244 NDUFA1O15239 70 aa6.93□□□□□ -1.3
LIG3-214ENST00000592244 SEC11AP67812 179 aa6.93□□□□□ -1.3
LIG3-214ENST00000592244 SERTAD4-AS1Q5TG53 156 aa6.93□□□□□ -1.3
LIG3-214ENST00000592244 C2orf66Q6UXQ4 117 aa6.93□□□□□ -1.3
LIG3-214ENST00000592244 OPRPNQ99935 248 aaPredicted RBP6.93□□□□□ -1.3
LIG3-214ENST00000592244 MRPL35Q9NZE8 188 aaKnown RBP6.93□□□□□ -1.3
LIG3-214ENST00000592244 A0A087WZ39 114 aa6.92□□□□□ -1.3
LIG3-214ENST00000592244 RPL18AQ02543 176 aaKnown RBP6.92□□□□□ -1.3
LIG3-214ENST00000592244 HERC1Q15751 4861 aa6.92□□□□□ -1.3
LIG3-214ENST00000592244 Q6ZRP5 223 aa6.91□□□□□ -1.3
LIG3-214ENST00000592244 COMMD7Q86VX2 200 aa6.91□□□□□ -1.3
LIG3-214ENST00000592244 LINC01561Q8N1V8 128 aa6.91□□□□□ -1.3
LIG3-214ENST00000592244 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.9□□□□□ -1.3
LIG3-214ENST00000592244 MT-ND6P03923 174 aa6.9□□□□□ -1.3
LIG3-214ENST00000592244 PRSS2P07478 247 aa6.9□□□□□ -1.3
LIG3-214ENST00000592244 ADCYAP1P18509 176 aa6.9□□□□□ -1.3
LIG3-214ENST00000592244 PRR3P79522 188 aaKnown RBP6.9□□□□□ -1.3
LIG3-214ENST00000592244 IFITM2Q01629 132 aa6.9□□□□□ -1.3
LIG3-214ENST00000592244 RHEBQ15382 184 aa6.9□□□□□ -1.3
LIG3-214ENST00000592244 LINC00242Q5T6M2 205 aa6.9□□□□□ -1.3
LIG3-214ENST00000592244 FAM104AQ969W3 186 aa6.9□□□□□ -1.3
LIG3-214ENST00000592244 PACRGQ96M98 296 aaPredicted RBP6.9□□□□□ -1.3
LIG3-214ENST00000592244 GNB1LQ9BYB4 327 aa6.9□□□□□ -1.3
LIG3-214ENST00000592244 EIF4EBP3O60516 100 aaPredicted RBP6.89□□□□□ -1.31
LIG3-214ENST00000592244 UBE2D1P51668 147 aa6.89□□□□□ -1.31
LIG3-214ENST00000592244 TIMM17AQ99595 171 aa6.89□□□□□ -1.31
LIG3-214ENST00000592244 TRBV30A0A0K0K1B3 111 aa6.88□□□□□ -1.31
LIG3-214ENST00000592244 HNRNPA3P51991 378 aaKnown RBP6.88□□□□□ -1.31
LIG3-214ENST00000592244 CKS1BP61024 79 aa6.88□□□□□ -1.31
LIG3-214ENST00000592244 HERVK_113P63121 156 aa6.88□□□□□ -1.31
LIG3-214ENST00000592244 KIAA1644Q3SXP7 199 aa6.88□□□□□ -1.31
LIG3-214ENST00000592244 C9orf116Q5BN46 136 aaPredicted RBP6.88□□□□□ -1.31
LIG3-214ENST00000592244 AMELXQ99217 191 aa6.88□□□□□ -1.31
LIG3-214ENST00000592244 GEMIN7Q9H840 131 aaKnown RBP6.88□□□□□ -1.31
LIG3-214ENST00000592244 IGIPA6NJ69 53 aa6.87□□□□□ -1.31
LIG3-214ENST00000592244 TLX1NBP0CAT3 122 aa6.87□□□□□ -1.31
LIG3-214ENST00000592244 NDUFA5Q16718 116 aa6.87□□□□□ -1.31
LIG3-214ENST00000592244 REG3GQ6UW15 175 aa6.87□□□□□ -1.31
LIG3-214ENST00000592244 SPINK6Q6UWN8 80 aa6.87□□□□□ -1.31
LIG3-214ENST00000592244 FA2HQ7L5A8 372 aa6.87□□□□□ -1.31
LIG3-214ENST00000592244 ERASQ7Z444 233 aa6.87□□□□□ -1.31
LIG3-214ENST00000592244 TOMM6Q96B49 74 aa6.87□□□□□ -1.31
LIG3-214ENST00000592244 SCGB3A1Q96QR1 104 aa6.87□□□□□ -1.31
LIG3-214ENST00000592244 RPS10P5Q9NQ39 176 aa6.87□□□□□ -1.31
LIG3-214ENST00000592244 SMCO4Q9NRQ5 59 aa6.87□□□□□ -1.31
LIG3-214ENST00000592244 A0A0J9YXV3 536 aa6.86□□□□□ -1.31
LIG3-214ENST00000592244 FABP9Q0Z7S8 132 aa6.86□□□□□ -1.31
LIG3-214ENST00000592244 C6orf226Q5I0X4 101 aa6.86□□□□□ -1.31
LIG3-214ENST00000592244 UNQ6190/PRO20217Q6UXQ8 127 aa6.86□□□□□ -1.31
LIG3-214ENST00000592244 CARHSP1Q9Y2V2 147 aaKnown RBP6.86□□□□□ -1.31
LIG3-214ENST00000592244 A0A1W2PNN7 141 aa6.85□□□□□ -1.31
LIG3-214ENST00000592244 C10orf91Q5T1B1 145 aa6.85□□□□□ -1.31
LIG3-214ENST00000592244 FAM19A3Q7Z5A8 133 aa6.85□□□□□ -1.31
LIG3-214ENST00000592244 ALKBH7Q9BT30 221 aaPredicted RBP6.85□□□□□ -1.31
LIG3-214ENST00000592244 TOMM7Q9P0U1 55 aa6.85□□□□□ -1.31
LIG3-214ENST00000592244 NDUFC2-KCTD14E9PQ53 114 aa6.84□□□□□ -1.31
LIG3-214ENST00000592244 KIAA0087Q14695 138 aa6.84□□□□□ -1.31
LIG3-214ENST00000592244 GAGE2EQ4V326 116 aa6.84□□□□□ -1.31
LIG3-214ENST00000592244 LINC00173Q6ZV60 143 aa6.84□□□□□ -1.31
LIG3-214ENST00000592244 Q8IZM0 81 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms