RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 SMIM27A0A1W2PRY6 76 aa7.09□□□□□ -1.27
CLIP3-204ENST00000590559 FAM168BA1KXE4 195 aa7.09□□□□□ -1.27
CLIP3-204ENST00000590559 H0Y9J4 135 aa7.09□□□□□ -1.27
CLIP3-204ENST00000590559 KRTAP1-4P0C5Y4 121 aa7.09□□□□□ -1.27
CLIP3-204ENST00000590559 MRPS36P82909 103 aaKnown RBP7.09□□□□□ -1.27
CLIP3-204ENST00000590559 FAM74A3Q4VXF1 159 aa7.09□□□□□ -1.27
CLIP3-204ENST00000590559 PRR26Q8N8Z3 221 aa7.09□□□□□ -1.27
CLIP3-204ENST00000590559 DIRC1Q969H9 104 aa7.09□□□□□ -1.27
CLIP3-204ENST00000590559 TMEM18Q96B42 140 aa7.09□□□□□ -1.27
CLIP3-204ENST00000590559 TCAPO15273 167 aa7.08□□□□□ -1.28
CLIP3-204ENST00000590559 RPL23P62829 140 aaKnown RBP7.08□□□□□ -1.28
CLIP3-204ENST00000590559 KIAA0087Q14695 138 aa7.08□□□□□ -1.28
CLIP3-204ENST00000590559 ORAOV1Q8WV07 137 aa7.08□□□□□ -1.28
CLIP3-204ENST00000590559 IMMP2LQ96T52 175 aa7.08□□□□□ -1.28
CLIP3-204ENST00000590559 C6orf48Q9UBA6 75 aa7.08□□□□□ -1.28
CLIP3-204ENST00000590559 NDUFA1O15239 70 aa7.07□□□□□ -1.28
CLIP3-204ENST00000590559 TNFRSF6BO95407 300 aa7.07□□□□□ -1.28
CLIP3-204ENST00000590559 TMEM241Q24JQ0 296 aa7.07□□□□□ -1.28
CLIP3-204ENST00000590559 UNQ6190/PRO20217Q6UXQ8 127 aa7.07□□□□□ -1.28
CLIP3-204ENST00000590559 SMIM2Q9BVW6 85 aa7.07□□□□□ -1.28
CLIP3-204ENST00000590559 SMDT1Q9H4I9 107 aa7.07□□□□□ -1.28
CLIP3-204ENST00000590559 SPANXA1Q9NS26 97 aa7.07□□□□□ -1.28
CLIP3-204ENST00000590559 A0A1B0GW15 77 aa7.06□□□□□ -1.28
CLIP3-204ENST00000590559 AKAP14Q86UN6 197 aa7.06□□□□□ -1.28
CLIP3-204ENST00000590559 IGLV1-50A0A075B6I6 118 aa7.05□□□□□ -1.28
CLIP3-204ENST00000590559 A0A087WZ39 114 aa7.05□□□□□ -1.28
CLIP3-204ENST00000590559 A0A1B0GXF2 115 aa7.05□□□□□ -1.28
CLIP3-204ENST00000590559 C9JQL5 133 aa7.05□□□□□ -1.28
CLIP3-204ENST00000590559 CKS2P33552 79 aa7.05□□□□□ -1.28
CLIP3-204ENST00000590559 D6R8Y8 96 aa7.04□□□□□ -1.28
CLIP3-204ENST00000590559 NPYP01303 97 aa7.04□□□□□ -1.28
CLIP3-204ENST00000590559 IFITM10A6NMD0 228 aa7.03□□□□□ -1.28
CLIP3-204ENST00000590559 HBBP68871 147 aa7.03□□□□□ -1.28
CLIP3-204ENST00000590559 LINC00242Q5T6M2 205 aa7.03□□□□□ -1.28
CLIP3-204ENST00000590559 FAM19A5Q7Z5A7 132 aaPredicted RBP7.03□□□□□ -1.28
CLIP3-204ENST00000590559 NAT8Q9UHE5 227 aa7.03□□□□□ -1.28
CLIP3-204ENST00000590559 PYGO1Q9Y3Y4 419 aa7.03□□□□□ -1.28
CLIP3-204ENST00000590559 TRBV30A0A0K0K1B3 111 aa7.02□□□□□ -1.29
CLIP3-204ENST00000590559 PRSS47A8MTI9 375 aa7.02□□□□□ -1.29
CLIP3-204ENST00000590559 ADIRFQ15847 76 aa7.02□□□□□ -1.29
CLIP3-204ENST00000590559 GAGE2EQ4V326 116 aa7.02□□□□□ -1.29
CLIP3-204ENST00000590559 C9orf129Q5T035 196 aaKnown RBP7.02□□□□□ -1.29
CLIP3-204ENST00000590559 GAGE2DQ9UEU5 116 aa7.02□□□□□ -1.29
CLIP3-204ENST00000590559 IGLV4-3A0A075B6K6 122 aa7.01□□□□□ -1.29
CLIP3-204ENST00000590559 NDUFC2-KCTD14E9PQ53 114 aa7.01□□□□□ -1.29
CLIP3-204ENST00000590559 M0QXV9 152 aa7.01□□□□□ -1.29
CLIP3-204ENST00000590559 PPBPP02775 128 aa7.01□□□□□ -1.29
CLIP3-204ENST00000590559 SRSF3P84103 164 aaKnown RBP7.01□□□□□ -1.29
CLIP3-204ENST00000590559 LINC01561Q8N1V8 128 aa7.01□□□□□ -1.29
CLIP3-204ENST00000590559 TGIF2-C20orf24A0A0A6YYL0 155 aa7□□□□□ -1.29
CLIP3-204ENST00000590559 F8W036 122 aa7□□□□□ -1.29
CLIP3-204ENST00000590559 MRPL54Q6P161 138 aaKnown RBP7□□□□□ -1.29
CLIP3-204ENST00000590559 C2orf82Q6UX34 121 aa7□□□□□ -1.29
CLIP3-204ENST00000590559 CARHSP1Q9Y2V2 147 aaKnown RBP7□□□□□ -1.29
CLIP3-204ENST00000590559 S100A8P05109 93 aa6.99□□□□□ -1.29
CLIP3-204ENST00000590559 IFI27P40305 119 aaPredicted RBP6.99□□□□□ -1.29
CLIP3-204ENST00000590559 UBE2D1P51668 147 aa6.99□□□□□ -1.29
CLIP3-204ENST00000590559 LINC00173Q6ZV60 143 aa6.99□□□□□ -1.29
CLIP3-204ENST00000590559 RPL13AP40429 203 aaKnown RBP6.98□□□□□ -1.29
CLIP3-204ENST00000590559 FAM19A3Q7Z5A8 133 aa6.98□□□□□ -1.29
CLIP3-204ENST00000590559 ORMDL3Q8N138 153 aa6.98□□□□□ -1.29
CLIP3-204ENST00000590559 TMEM141Q96I45 108 aa6.98□□□□□ -1.29
CLIP3-204ENST00000590559 AMELXQ99217 191 aa6.98□□□□□ -1.29
CLIP3-204ENST00000590559 hCG_2014768A0A024R1R8 64 aa6.97□□□□□ -1.29
CLIP3-204ENST00000590559 ZNF861PO60384 105 aa6.97□□□□□ -1.29
CLIP3-204ENST00000590559 UBE2BP63146 152 aa6.97□□□□□ -1.29
CLIP3-204ENST00000590559 TMEM136Q6ZRR5 245 aa6.97□□□□□ -1.29
CLIP3-204ENST00000590559 ATP5L2Q7Z4Y8 100 aa6.97□□□□□ -1.29
CLIP3-204ENST00000590559 PRELID3AQ96N28 172 aa6.97□□□□□ -1.29
CLIP3-204ENST00000590559 RAB5AP20339 215 aa6.96□□□□□ -1.3
CLIP3-204ENST00000590559 ZC2HC1BQ5TFG8 222 aa6.96□□□□□ -1.3
CLIP3-204ENST00000590559 FAT4Q6V0I7 4981 aa6.96□□□□□ -1.3
CLIP3-204ENST00000590559 MUC17Q685J3 4493 aa6.95□□□□□ -1.3
CLIP3-204ENST00000590559 PEA15Q15121 130 aa6.95□□□□□ -1.3
CLIP3-204ENST00000590559 TEX43Q6ZNM6 134 aa6.95□□□□□ -1.3
CLIP3-204ENST00000590559 PACRGQ96M98 296 aaPredicted RBP6.95□□□□□ -1.3
CLIP3-204ENST00000590559 LAMTOR2Q9Y2Q5 125 aa6.95□□□□□ -1.3
CLIP3-204ENST00000590559 C22orf24Q9Y442 160 aa6.95□□□□□ -1.3
CLIP3-204ENST00000590559 IGIPA6NJ69 53 aa6.94□□□□□ -1.3
CLIP3-204ENST00000590559 NUPR1O60356 82 aa6.94□□□□□ -1.3
CLIP3-204ENST00000590559 NPSP0C0P6 89 aa6.94□□□□□ -1.3
CLIP3-204ENST00000590559 PRR4Q16378 134 aa6.94□□□□□ -1.3
CLIP3-204ENST00000590559 C2orf66Q6UXQ4 117 aa6.94□□□□□ -1.3
CLIP3-204ENST00000590559 Q6ZN92 141 aa6.94□□□□□ -1.3
CLIP3-204ENST00000590559 Q8IZM0 81 aa6.94□□□□□ -1.3
CLIP3-204ENST00000590559 Q8N8P6 123 aa6.93□□□□□ -1.3
CLIP3-204ENST00000590559 TP73-AS1Q9UF72 201 aa6.93□□□□□ -1.3
CLIP3-204ENST00000590559 A0A087X002 238 aa6.92□□□□□ -1.3
CLIP3-204ENST00000590559 LOC389332A0A1B0GUA5 103 aa6.92□□□□□ -1.3
CLIP3-204ENST00000590559 LINC00469Q8N7U9 141 aa6.92□□□□□ -1.3
CLIP3-204ENST00000590559 C2orf88Q9BSF0 95 aa6.92□□□□□ -1.3
CLIP3-204ENST00000590559 CYSLTR1Q9Y271 337 aa6.92□□□□□ -1.3
CLIP3-204ENST00000590559 C6orf226Q5I0X4 101 aa6.91□□□□□ -1.3
CLIP3-204ENST00000590559 CTDSP1Q9GZU7 261 aa6.91□□□□□ -1.3
CLIP3-204ENST00000590559 VCX2Q9H322 139 aa6.91□□□□□ -1.3
CLIP3-204ENST00000590559 MAP1LC3AQ9H492 121 aa6.91□□□□□ -1.3
CLIP3-204ENST00000590559 XAGE1AQ9HD64 81 aa6.91□□□□□ -1.3
CLIP3-204ENST00000590559 K7EMI3 77 aa6.9□□□□□ -1.3
CLIP3-204ENST00000590559 CKS1BP61024 79 aa6.9□□□□□ -1.3
CLIP3-204ENST00000590559 ORMDL2Q53FV1 153 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms