RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 TNXBP22105 4242 aa9.51□□□□□ -0.89
CLIP3-202ENST00000585466 RAB5AP20339 215 aa9.51□□□□□ -0.89
CLIP3-202ENST00000585466 MALP21145 153 aa9.51□□□□□ -0.89
CLIP3-202ENST00000585466 C10orf91Q5T1B1 145 aa9.51□□□□□ -0.89
CLIP3-202ENST00000585466 LINC00173Q6ZV60 143 aa9.51□□□□□ -0.89
CLIP3-202ENST00000585466 C2orf48Q96LS8 159 aa9.51□□□□□ -0.89
CLIP3-202ENST00000585466 CTDSP1Q9GZU7 261 aa9.51□□□□□ -0.89
CLIP3-202ENST00000585466 IFITM10A6NMD0 228 aa9.5□□□□□ -0.89
CLIP3-202ENST00000585466 J3QL48 77 aa9.5□□□□□ -0.89
CLIP3-202ENST00000585466 COMMD7Q86VX2 200 aa9.5□□□□□ -0.89
CLIP3-202ENST00000585466 STPG4Q8N801 248 aa9.5□□□□□ -0.89
CLIP3-202ENST00000585466 TRAV9-1A0A075B6T8 112 aa9.49□□□□□ -0.89
CLIP3-202ENST00000585466 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.49□□□□□ -0.89
CLIP3-202ENST00000585466 OXTP01178 125 aa9.49□□□□□ -0.89
CLIP3-202ENST00000585466 IFI27P40305 119 aaPredicted RBP9.49□□□□□ -0.89
CLIP3-202ENST00000585466 PTTG1IPP53801 180 aa9.49□□□□□ -0.89
CLIP3-202ENST00000585466 SPAG11BQ08648 103 aa9.49□□□□□ -0.89
CLIP3-202ENST00000585466 LINC00242Q5T6M2 205 aa9.49□□□□□ -0.89
CLIP3-202ENST00000585466 ZC2HC1BQ5TFG8 222 aa9.49□□□□□ -0.89
CLIP3-202ENST00000585466 C2orf66Q6UXQ4 117 aa9.49□□□□□ -0.89
CLIP3-202ENST00000585466 DPH3Q96FX2 82 aa9.49□□□□□ -0.89
CLIP3-202ENST00000585466 KIAA1644Q3SXP7 199 aa9.48□□□□□ -0.89
CLIP3-202ENST00000585466 OR10D4PQ8NGN7 298 aa9.48□□□□□ -0.89
CLIP3-202ENST00000585466 TMEM141Q96I45 108 aa9.48□□□□□ -0.89
CLIP3-202ENST00000585466 CAMK2N2Q96S95 79 aa9.48□□□□□ -0.89
CLIP3-202ENST00000585466 AMELXQ99217 191 aa9.48□□□□□ -0.89
CLIP3-202ENST00000585466 IGIPA6NJ69 53 aa9.47□□□□□ -0.89
CLIP3-202ENST00000585466 UBE2D1P51668 147 aa9.47□□□□□ -0.89
CLIP3-202ENST00000585466 LINC00474Q9P2X8 69 aa9.47□□□□□ -0.89
CLIP3-202ENST00000585466 CYSLTR1Q9Y271 337 aa9.47□□□□□ -0.89
CLIP3-202ENST00000585466 CARHSP1Q9Y2V2 147 aaKnown RBP9.47□□□□□ -0.89
CLIP3-202ENST00000585466 HMCN2Q8NDA2 5059 aa9.46□□□□□ -0.89
CLIP3-202ENST00000585466 A0A087WZ39 114 aa9.46□□□□□ -0.9
CLIP3-202ENST00000585466 LOC107984640A0A0U1RRK4 108 aa9.46□□□□□ -0.9
CLIP3-202ENST00000585466 K7EMI3 77 aa9.46□□□□□ -0.9
CLIP3-202ENST00000585466 APOMO95445 188 aa9.46□□□□□ -0.9
CLIP3-202ENST00000585466 PRR3P79522 188 aaKnown RBP9.46□□□□□ -0.9
CLIP3-202ENST00000585466 KIAA0087Q14695 138 aa9.46□□□□□ -0.9
CLIP3-202ENST00000585466 ORMDL2Q53FV1 153 aa9.46□□□□□ -0.9
CLIP3-202ENST00000585466 C10orf25Q5T742 122 aa9.46□□□□□ -0.9
CLIP3-202ENST00000585466 ORAOV1Q8WV07 137 aa9.46□□□□□ -0.9
CLIP3-202ENST00000585466 NXT2Q9NPJ8 142 aaKnown RBP9.46□□□□□ -0.9
CLIP3-202ENST00000585466 PKIGQ9Y2B9 76 aa9.46□□□□□ -0.9
CLIP3-202ENST00000585466 A0A0J9YXV3 536 aa9.45□□□□□ -0.9
CLIP3-202ENST00000585466 MT1HL1P0DM35 61 aa9.45□□□□□ -0.9
CLIP3-202ENST00000585466 RNF151Q2KHN1 245 aa9.45□□□□□ -0.9
CLIP3-202ENST00000585466 A0A1W2PNN7 141 aa9.44□□□□□ -0.9
CLIP3-202ENST00000585466 LINC01546A6NGU7 62 aa9.44□□□□□ -0.9
CLIP3-202ENST00000585466 NPSP0C0P6 89 aa9.44□□□□□ -0.9
CLIP3-202ENST00000585466 GAGE2BQ13066 116 aa9.44□□□□□ -0.9
CLIP3-202ENST00000585466 FAM19A3Q7Z5A8 133 aa9.44□□□□□ -0.9
CLIP3-202ENST00000585466 C7orf33Q8WU49 177 aa9.44□□□□□ -0.9
CLIP3-202ENST00000585466 GNB1LQ9BYB4 327 aa9.44□□□□□ -0.9
CLIP3-202ENST00000585466 MRPL35Q9NZE8 188 aaKnown RBP9.44□□□□□ -0.9
CLIP3-202ENST00000585466 TGIF2-C20orf24A0A0A6YYL0 155 aa9.43□□□□□ -0.9
CLIP3-202ENST00000585466 F8WDY8 70 aa9.43□□□□□ -0.9
CLIP3-202ENST00000585466 TEX43Q6ZNM6 134 aa9.43□□□□□ -0.9
CLIP3-202ENST00000585466 ALKBH7Q9BT30 221 aaPredicted RBP9.43□□□□□ -0.9
CLIP3-202ENST00000585466 UNQ6190/PRO20217Q6UXQ8 127 aa9.42□□□□□ -0.9
CLIP3-202ENST00000585466 TOMM6Q96B49 74 aa9.42□□□□□ -0.9
CLIP3-202ENST00000585466 C6orf48Q9UBA6 75 aa9.42□□□□□ -0.9
CLIP3-202ENST00000585466 RHEBQ15382 184 aa9.41□□□□□ -0.9
CLIP3-202ENST00000585466 NDUFA5Q16718 116 aa9.41□□□□□ -0.9
CLIP3-202ENST00000585466 LINC01561Q8N1V8 128 aa9.41□□□□□ -0.9
CLIP3-202ENST00000585466 TIMM17AQ99595 171 aa9.41□□□□□ -0.9
CLIP3-202ENST00000585466 NDUFA1O15239 70 aa9.4□□□□□ -0.9
CLIP3-202ENST00000585466 TLX1NBP0CAT3 122 aa9.4□□□□□ -0.9
CLIP3-202ENST00000585466 S100PP25815 95 aa9.4□□□□□ -0.9
CLIP3-202ENST00000585466 C9orf116Q5BN46 136 aaPredicted RBP9.4□□□□□ -0.9
CLIP3-202ENST00000585466 RPL18AQ02543 176 aaKnown RBP9.39□□□□□ -0.91
CLIP3-202ENST00000585466 Q6ZN92 141 aa9.39□□□□□ -0.91
CLIP3-202ENST00000585466 Q6ZRP5 223 aa9.39□□□□□ -0.91
CLIP3-202ENST00000585466 SLC7A5P1Q8MH63 180 aa9.39□□□□□ -0.91
CLIP3-202ENST00000585466 C2orf88Q9BSF0 95 aa9.39□□□□□ -0.91
CLIP3-202ENST00000585466 VCX2Q9H322 139 aa9.39□□□□□ -0.91
CLIP3-202ENST00000585466 C2orf82Q6UX34 121 aa9.38□□□□□ -0.91
CLIP3-202ENST00000585466 KRTAP7-1Q8IUC3 87 aa9.38□□□□□ -0.91
CLIP3-202ENST00000585466 MRPL18Q9H0U6 180 aaKnown RBP9.38□□□□□ -0.91
CLIP3-202ENST00000585466 RPS10P5Q9NQ39 176 aa9.38□□□□□ -0.91
CLIP3-202ENST00000585466 MT-ND6P03923 174 aa9.37□□□□□ -0.91
CLIP3-202ENST00000585466 SRSF9Q13242 221 aaKnown RBP eCLIP9.37□□□□□ -0.91
CLIP3-202ENST00000585466 COX19Q49B96 90 aa9.37□□□□□ -0.91
CLIP3-202ENST00000585466 ERASQ7Z444 233 aa9.37□□□□□ -0.91
CLIP3-202ENST00000585466 FAM168BA1KXE4 195 aa9.36□□□□□ -0.91
CLIP3-202ENST00000585466 URB1-AS1Q96HZ7 61 aa9.36□□□□□ -0.91
CLIP3-202ENST00000585466 CDKN2A-AS1Q9UH64 79 aa9.36□□□□□ -0.91
CLIP3-202ENST00000585466 A0A096LNJ9 63 aa9.35□□□□□ -0.91
CLIP3-202ENST00000585466 TRBV30A0A0K0K1B3 111 aa9.35□□□□□ -0.91
CLIP3-202ENST00000585466 PHF5AQ7RTV0 110 aaKnown RBP9.35□□□□□ -0.91
CLIP3-202ENST00000585466 KRTAP11-1Q8IUC1 163 aa9.35□□□□□ -0.91
CLIP3-202ENST00000585466 ATP6V1G1O75348 118 aa9.34□□□□□ -0.91
CLIP3-202ENST00000585466 G0S2P27469 103 aa9.34□□□□□ -0.91
CLIP3-202ENST00000585466 HERVK_113P63121 156 aa9.34□□□□□ -0.91
CLIP3-202ENST00000585466 FABP9Q0Z7S8 132 aa9.34□□□□□ -0.91
CLIP3-202ENST00000585466 SCGB3A1Q96QR1 104 aa9.34□□□□□ -0.91
CLIP3-202ENST00000585466 IGLV5-45A0A087WSX0 123 aa9.33□□□□□ -0.92
CLIP3-202ENST00000585466 PAPPA-AS1Q5QFB9 102 aa9.33□□□□□ -0.92
CLIP3-202ENST00000585466 Q8IZM0 81 aa9.33□□□□□ -0.92
CLIP3-202ENST00000585466 YPEL4Q96NS1 127 aa9.33□□□□□ -0.92
CLIP3-202ENST00000585466 PSORS1C2Q9UIG4 136 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms