RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 UQCC3Q6UW78 93 aa5.85□□□□□ -1.47
CIITA-208ENST00000572665 GATD1Q8NB37 220 aa5.85□□□□□ -1.47
CIITA-208ENST00000572665 CHCHD10Q8WYQ3 142 aaPredicted RBP5.85□□□□□ -1.47
CIITA-208ENST00000572665 GFRA4Q9GZZ7 299 aa5.85□□□□□ -1.47
CIITA-208ENST00000572665 PLAC8Q9NZF1 115 aa5.85□□□□□ -1.47
CIITA-208ENST00000572665 NAT8Q9UHE5 227 aa5.85□□□□□ -1.47
CIITA-208ENST00000572665 GVQW2A0A096LPI5 108 aaPredicted RBP5.84□□□□□ -1.47
CIITA-208ENST00000572665 SDHAF1A6NFY7 115 aa5.84□□□□□ -1.47
CIITA-208ENST00000572665 PANO1I0J062 215 aa5.84□□□□□ -1.47
CIITA-208ENST00000572665 GATCO43716 136 aaKnown RBP5.84□□□□□ -1.47
CIITA-208ENST00000572665 FGF6P10767 208 aa5.84□□□□□ -1.47
CIITA-208ENST00000572665 HNRNPA3P51991 378 aaKnown RBP5.84□□□□□ -1.47
CIITA-208ENST00000572665 RPL23P62829 140 aaKnown RBP5.84□□□□□ -1.47
CIITA-208ENST00000572665 COX6A2Q02221 97 aa5.84□□□□□ -1.47
CIITA-208ENST00000572665 MAJINQ3KP22 176 aa5.84□□□□□ -1.47
CIITA-208ENST00000572665 C15orf56Q8N910 161 aa5.84□□□□□ -1.47
CIITA-208ENST00000572665 OR5A1Q8NGJ0 315 aa5.84□□□□□ -1.47
CIITA-208ENST00000572665 GTSF1Q8WW33 167 aa5.84□□□□□ -1.47
CIITA-208ENST00000572665 ISOC2Q96AB3 205 aa5.84□□□□□ -1.47
CIITA-208ENST00000572665 TRAV26-2A0A0B4J265 109 aa5.83□□□□□ -1.48
CIITA-208ENST00000572665 IGHV1-58A0A0C4DH39 117 aa5.83□□□□□ -1.48
CIITA-208ENST00000572665 LINC00862A6NCI5 91 aa5.83□□□□□ -1.48
CIITA-208ENST00000572665 PHOX2AO14813 284 aa5.83□□□□□ -1.48
CIITA-208ENST00000572665 CHTF8P0CG12 524 aa5.83□□□□□ -1.48
CIITA-208ENST00000572665 SS18Q15532 418 aa5.83□□□□□ -1.48
CIITA-208ENST00000572665 HIGD2BQ4VC39 106 aa5.83□□□□□ -1.48
CIITA-208ENST00000572665 MRAP2Q96G30 205 aa5.83□□□□□ -1.48
CIITA-208ENST00000572665 OSTCQ9NRP0 149 aa5.83□□□□□ -1.48
CIITA-208ENST00000572665 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.82□□□□□ -1.48
CIITA-208ENST00000572665 IGKV2-24A0A0C4DH68 120 aa5.82□□□□□ -1.48
CIITA-208ENST00000572665 TRBV6-5A0A0K0K1A5 114 aa5.82□□□□□ -1.48
CIITA-208ENST00000572665 IGKV2-29A2NJV5 120 aaPredicted RBP5.82□□□□□ -1.48
CIITA-208ENST00000572665 PPP1R17O96001 155 aa5.82□□□□□ -1.48
CIITA-208ENST00000572665 FOXA3P55318 350 aaPredicted RBP5.82□□□□□ -1.48
CIITA-208ENST00000572665 RPL39LQ96EH5 51 aaKnown RBP5.82□□□□□ -1.48
CIITA-208ENST00000572665 KRTAP2-2Q9BYT5 123 aa5.82□□□□□ -1.48
CIITA-208ENST00000572665 ST20Q9HBF5 79 aa5.82□□□□□ -1.48
CIITA-208ENST00000572665 V9GYV3 84 aa5.82□□□□□ -1.48
CIITA-208ENST00000572665 FAM231BA6NCW3 169 aa5.81□□□□□ -1.48
CIITA-208ENST00000572665 CCL25O15444 150 aa5.81□□□□□ -1.48
CIITA-208ENST00000572665 XCL1P47992 114 aa5.81□□□□□ -1.48
CIITA-208ENST00000572665 ADIRFQ15847 76 aa5.81□□□□□ -1.48
CIITA-208ENST00000572665 REG3GQ6UW15 175 aa5.81□□□□□ -1.48
CIITA-208ENST00000572665 COMMD7Q86VX2 200 aa5.81□□□□□ -1.48
CIITA-208ENST00000572665 TSKUQ8WUA8 353 aa5.81□□□□□ -1.48
CIITA-208ENST00000572665 CARD19Q96LW7 228 aa5.81□□□□□ -1.48
CIITA-208ENST00000572665 LINC00959A0A1B0GUT2 108 aa5.8□□□□□ -1.48
CIITA-208ENST00000572665 A0A1B0GUT8 65 aa5.8□□□□□ -1.48
CIITA-208ENST00000572665 TMEM218A2RU14 115 aa5.8□□□□□ -1.48
CIITA-208ENST00000572665 ADCYAP1P18509 176 aa5.8□□□□□ -1.48
CIITA-208ENST00000572665 PRR3P79522 188 aaKnown RBP5.8□□□□□ -1.48
CIITA-208ENST00000572665 C7orf77A4D0Y5 90 aa5.79□□□□□ -1.48
CIITA-208ENST00000572665 HIGD1CA8MV81 97 aa5.79□□□□□ -1.48
CIITA-208ENST00000572665 MT1HL1P0DM35 61 aa5.79□□□□□ -1.48
CIITA-208ENST00000572665 ESDP10768 282 aa5.79□□□□□ -1.48
CIITA-208ENST00000572665 FCER1GP30273 86 aa5.79□□□□□ -1.48
CIITA-208ENST00000572665 CD164L2Q6UWJ8 174 aa5.79□□□□□ -1.48
CIITA-208ENST00000572665 SPINK6Q6UWN8 80 aa5.79□□□□□ -1.48
CIITA-208ENST00000572665 MRPL52Q86TS9 123 aaKnown RBP5.79□□□□□ -1.48
CIITA-208ENST00000572665 ZNF664Q8N3J9 261 aa5.79□□□□□ -1.48
CIITA-208ENST00000572665 LINC01600Q96MT4 127 aa5.79□□□□□ -1.48
CIITA-208ENST00000572665 SEC11CQ9BY50 192 aa5.79□□□□□ -1.48
CIITA-208ENST00000572665 TMEM191AQ9H0A3 160 aa5.79□□□□□ -1.48
CIITA-208ENST00000572665 A0A096LNI7 61 aa5.78□□□□□ -1.48
CIITA-208ENST00000572665 TRBV27A0A0K0K1C4 114 aa5.78□□□□□ -1.48
CIITA-208ENST00000572665 SMIM27A0A1W2PRY6 76 aa5.78□□□□□ -1.48
CIITA-208ENST00000572665 C1orf196B1AJZ1 125 aa5.78□□□□□ -1.48
CIITA-208ENST00000572665 APOMO95445 188 aa5.78□□□□□ -1.48
CIITA-208ENST00000572665 SYCNQ0VAF6 134 aa5.78□□□□□ -1.48
CIITA-208ENST00000572665 RIGQ13278 110 aa5.78□□□□□ -1.48
CIITA-208ENST00000572665 C10orf91Q5T1B1 145 aa5.78□□□□□ -1.48
CIITA-208ENST00000572665 KIR2DL4Q99706 377 aa5.78□□□□□ -1.48
CIITA-208ENST00000572665 OPRPNQ99935 248 aaPredicted RBP5.78□□□□□ -1.48
CIITA-208ENST00000572665 CDC42SE2Q9NRR3 84 aa5.78□□□□□ -1.48
CIITA-208ENST00000572665 TMEM242Q9NWH2 141 aa5.78□□□□□ -1.48
CIITA-208ENST00000572665 LOC107984640A0A0U1RRK4 108 aa5.77□□□□□ -1.49
CIITA-208ENST00000572665 PPP1R2P9O14990 202 aa5.77□□□□□ -1.49
CIITA-208ENST00000572665 TCAPO15273 167 aa5.77□□□□□ -1.49
CIITA-208ENST00000572665 ZC2HC1BQ5TFG8 222 aa5.77□□□□□ -1.49
CIITA-208ENST00000572665 NUP35Q8NFH5 326 aa5.77□□□□□ -1.49
CIITA-208ENST00000572665 NAT8BQ9UHF3 227 aa5.77□□□□□ -1.49
CIITA-208ENST00000572665 CSDC2Q9Y534 153 aaKnown RBP5.77□□□□□ -1.49
CIITA-208ENST00000572665 PKHD1L1Q86WI1 4243 aa5.76□□□□□ -1.49
CIITA-208ENST00000572665 IGLV4-69A0A075B6H9 119 aa5.76□□□□□ -1.49
CIITA-208ENST00000572665 IGLV7-46A0A075B6I9 117 aa5.76□□□□□ -1.49
CIITA-208ENST00000572665 F8W036 122 aa5.76□□□□□ -1.49
CIITA-208ENST00000572665 COX7A2LO14548 114 aa5.76□□□□□ -1.49
CIITA-208ENST00000572665 RAB4AP20338 218 aa5.76□□□□□ -1.49
CIITA-208ENST00000572665 POLR2KP53803 58 aaKnown RBP5.76□□□□□ -1.49
CIITA-208ENST00000572665 Q6ZVQ6 151 aa5.76□□□□□ -1.49
CIITA-208ENST00000572665 CARHSP1Q9Y2V2 147 aaKnown RBP5.76□□□□□ -1.49
CIITA-208ENST00000572665 LRP1Q07954 4544 aaKnown RBP5.76□□□□□ -1.49
CIITA-208ENST00000572665 A0A0J9YXV3 536 aa5.75□□□□□ -1.49
CIITA-208ENST00000572665 MT-ND4LP03901 98 aa5.75□□□□□ -1.49
CIITA-208ENST00000572665 CAMK2N2Q96S95 79 aa5.75□□□□□ -1.49
CIITA-208ENST00000572665 FAT3Q8TDW7 4589 aa5.74□□□□□ -1.49
CIITA-208ENST00000572665 F8WDY8 70 aa5.74□□□□□ -1.49
CIITA-208ENST00000572665 AMN1Q8IY45 258 aa5.74□□□□□ -1.49
CIITA-208ENST00000572665 A0A1B0GW15 77 aa5.73□□□□□ -1.49
CIITA-208ENST00000572665 A0A1B0GXF2 115 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms