RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 F8WDY8 70 aa5.62□□□□□ -1.51
HDDC3-204ENST00000559834 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.62□□□□□ -1.51
HDDC3-204ENST00000559834 PPP1R2P9O14990 202 aa5.62□□□□□ -1.51
HDDC3-204ENST00000559834 RAB5AP20339 215 aa5.62□□□□□ -1.51
HDDC3-204ENST00000559834 AKR1D1P51857 326 aa5.62□□□□□ -1.51
HDDC3-204ENST00000559834 SUMO2P61956 95 aaKnown RBP5.62□□□□□ -1.51
HDDC3-204ENST00000559834 DIRC1Q969H9 104 aa5.62□□□□□ -1.51
HDDC3-204ENST00000559834 IMMP2LQ96T52 175 aa5.62□□□□□ -1.51
HDDC3-204ENST00000559834 TIMM21Q9BVV7 248 aa5.62□□□□□ -1.51
HDDC3-204ENST00000559834 OSTCQ9NRP0 149 aa5.62□□□□□ -1.51
HDDC3-204ENST00000559834 UBE2D4Q9Y2X8 147 aa5.62□□□□□ -1.51
HDDC3-204ENST00000559834 TCAPO15273 167 aa5.61□□□□□ -1.51
HDDC3-204ENST00000559834 SPAG11BQ08648 103 aa5.61□□□□□ -1.51
HDDC3-204ENST00000559834 PNRC1Q12796 327 aaPredicted RBP5.61□□□□□ -1.51
HDDC3-204ENST00000559834 TMEM241Q24JQ0 296 aa5.61□□□□□ -1.51
HDDC3-204ENST00000559834 LINC01551Q86U37 167 aa5.61□□□□□ -1.51
HDDC3-204ENST00000559834 OR10D4PQ8NGN7 298 aa5.61□□□□□ -1.51
HDDC3-204ENST00000559834 OPRPNQ99935 248 aaPredicted RBP5.61□□□□□ -1.51
HDDC3-204ENST00000559834 SMIM7Q9BQ49 75 aa5.61□□□□□ -1.51
HDDC3-204ENST00000559834 NAT8Q9UHE5 227 aa5.61□□□□□ -1.51
HDDC3-204ENST00000559834 A0A087WZ39 114 aa5.6□□□□□ -1.51
HDDC3-204ENST00000559834 IGLV7-43P04211 117 aa5.6□□□□□ -1.51
HDDC3-204ENST00000559834 RNASE13Q5GAN3 156 aaKnown RBP5.6□□□□□ -1.51
HDDC3-204ENST00000559834 PHF5AQ7RTV0 110 aaKnown RBP5.6□□□□□ -1.51
HDDC3-204ENST00000559834 LINC00518Q8N0U6 118 aa5.6□□□□□ -1.51
HDDC3-204ENST00000559834 MRPL35Q9NZE8 188 aaKnown RBP5.6□□□□□ -1.51
HDDC3-204ENST00000559834 RNF213Q63HN8 5207 aa5.59□□□□□ -1.51
HDDC3-204ENST00000559834 TGIF2-C20orf24A0A0A6YYL0 155 aa5.59□□□□□ -1.51
HDDC3-204ENST00000559834 SMKR1H3BMG3 65 aa5.59□□□□□ -1.51
HDDC3-204ENST00000559834 NDUFA1O15239 70 aa5.59□□□□□ -1.51
HDDC3-204ENST00000559834 S100A6P06703 90 aa5.59□□□□□ -1.51
HDDC3-204ENST00000559834 SNRPEP62304 92 aaKnown RBP5.59□□□□□ -1.51
HDDC3-204ENST00000559834 ADIRFQ15847 76 aa5.59□□□□□ -1.51
HDDC3-204ENST00000559834 NRACQ8N912 160 aa5.59□□□□□ -1.51
HDDC3-204ENST00000559834 C20orf78Q9BR46 151 aa5.59□□□□□ -1.51
HDDC3-204ENST00000559834 NAT8BQ9UHF3 227 aa5.59□□□□□ -1.51
HDDC3-204ENST00000559834 LRP2P98164 4655 aa5.58□□□□□ -1.52
HDDC3-204ENST00000559834 C5orf52A6NGY3 159 aa5.58□□□□□ -1.52
HDDC3-204ENST00000559834 RPL23P62829 140 aaKnown RBP5.58□□□□□ -1.52
HDDC3-204ENST00000559834 FAM104BQ5XKR9 115 aa5.58□□□□□ -1.52
HDDC3-204ENST00000559834 Q6ZUT4 128 aa5.58□□□□□ -1.52
HDDC3-204ENST00000559834 PRR26Q8N8Z3 221 aa5.58□□□□□ -1.52
HDDC3-204ENST00000559834 ORAOV1Q8WV07 137 aa5.58□□□□□ -1.52
HDDC3-204ENST00000559834 TNXBP22105 4242 aa5.58□□□□□ -1.52
HDDC3-204ENST00000559834 IGLV1-50A0A075B6I6 118 aa5.57□□□□□ -1.52
HDDC3-204ENST00000559834 TRBV24-1A0A075B6N3 115 aa5.57□□□□□ -1.52
HDDC3-204ENST00000559834 IGHV3OR16-9A0A0B4J2B5 98 aa5.57□□□□□ -1.52
HDDC3-204ENST00000559834 A0A1B0GW15 77 aa5.57□□□□□ -1.52
HDDC3-204ENST00000559834 H0Y9J4 135 aa5.57□□□□□ -1.52
HDDC3-204ENST00000559834 TLX1NBP0CAT3 122 aa5.57□□□□□ -1.52
HDDC3-204ENST00000559834 CKS2P33552 79 aa5.57□□□□□ -1.52
HDDC3-204ENST00000559834 RPL32P62910 135 aaKnown RBP5.57□□□□□ -1.52
HDDC3-204ENST00000559834 FABP9Q0Z7S8 132 aa5.57□□□□□ -1.52
HDDC3-204ENST00000559834 MRPL51Q4U2R6 128 aaKnown RBP5.57□□□□□ -1.52
HDDC3-204ENST00000559834 CTDSP1Q9GZU7 261 aa5.57□□□□□ -1.52
HDDC3-204ENST00000559834 SPANXA1Q9NS26 97 aa5.57□□□□□ -1.52
HDDC3-204ENST00000559834 V9GYV3 84 aa5.57□□□□□ -1.52
HDDC3-204ENST00000559834 HBBP68871 147 aa5.56□□□□□ -1.52
HDDC3-204ENST00000559834 MRPS36P82909 103 aaKnown RBP5.56□□□□□ -1.52
HDDC3-204ENST00000559834 UNQ6190/PRO20217Q6UXQ8 127 aa5.56□□□□□ -1.52
HDDC3-204ENST00000559834 C12orf57Q99622 126 aa5.56□□□□□ -1.52
HDDC3-204ENST00000559834 IFITM10A6NMD0 228 aa5.55□□□□□ -1.52
HDDC3-204ENST00000559834 TNFRSF6BO95407 300 aa5.55□□□□□ -1.52
HDDC3-204ENST00000559834 S100A8P05109 93 aa5.55□□□□□ -1.52
HDDC3-204ENST00000559834 UBE2D1P51668 147 aa5.55□□□□□ -1.52
HDDC3-204ENST00000559834 RPL39P62891 51 aaKnown RBP5.55□□□□□ -1.52
HDDC3-204ENST00000559834 UBE2BP63146 152 aa5.55□□□□□ -1.52
HDDC3-204ENST00000559834 GAGE2EQ4V326 116 aa5.55□□□□□ -1.52
HDDC3-204ENST00000559834 FAM19A5Q7Z5A7 132 aaPredicted RBP5.55□□□□□ -1.52
HDDC3-204ENST00000559834 ANAPC16Q96DE5 110 aa5.55□□□□□ -1.52
HDDC3-204ENST00000559834 GAGE2DQ9UEU5 116 aa5.55□□□□□ -1.52
HDDC3-204ENST00000559834 FAM168BA1KXE4 195 aa5.54□□□□□ -1.52
HDDC3-204ENST00000559834 PCP4L1A6NKN8 68 aa5.54□□□□□ -1.52
HDDC3-204ENST00000559834 HIST1H2BKO60814 126 aa5.54□□□□□ -1.52
HDDC3-204ENST00000559834 PPBPP02775 128 aa5.54□□□□□ -1.52
HDDC3-204ENST00000559834 TRGC2P03986 189 aa5.54□□□□□ -1.52
HDDC3-204ENST00000559834 HIST1H2BJP06899 126 aa5.54□□□□□ -1.52
HDDC3-204ENST00000559834 SMIM6P0DI80 62 aa5.54□□□□□ -1.52
HDDC3-204ENST00000559834 HIST1H2BOP23527 126 aa5.54□□□□□ -1.52
HDDC3-204ENST00000559834 S100PP25815 95 aa5.54□□□□□ -1.52
HDDC3-204ENST00000559834 HIST1H2BBP33778 126 aa5.54□□□□□ -1.52
HDDC3-204ENST00000559834 RPL13AP40429 203 aaKnown RBP5.54□□□□□ -1.52
HDDC3-204ENST00000559834 NDUFA6P56556 154 aa5.54□□□□□ -1.52
HDDC3-204ENST00000559834 HIST1H2BDP58876 126 aa5.54□□□□□ -1.52
HDDC3-204ENST00000559834 HIST1H2BCP62807 126 aa5.54□□□□□ -1.52
HDDC3-204ENST00000559834 HIST2H2BEQ16778 126 aa5.54□□□□□ -1.52
HDDC3-204ENST00000559834 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.54□□□□□ -1.52
HDDC3-204ENST00000559834 C10orf25Q5T742 122 aa5.54□□□□□ -1.52
HDDC3-204ENST00000559834 HIST1H2BHQ93079 126 aa5.54□□□□□ -1.52
HDDC3-204ENST00000559834 HIST1H2BNQ99877 126 aa5.54□□□□□ -1.52
HDDC3-204ENST00000559834 HIST1H2BMQ99879 126 aa5.54□□□□□ -1.52
HDDC3-204ENST00000559834 SMIM2Q9BVW6 85 aa5.54□□□□□ -1.52
HDDC3-204ENST00000559834 C6orf48Q9UBA6 75 aa5.54□□□□□ -1.52
HDDC3-204ENST00000559834 TRBV30A0A0K0K1B3 111 aa5.53□□□□□ -1.52
HDDC3-204ENST00000559834 SMIM27A0A1W2PRY6 76 aa5.53□□□□□ -1.52
HDDC3-204ENST00000559834 M0QXV9 152 aa5.53□□□□□ -1.52
HDDC3-204ENST00000559834 IFI27P40305 119 aaPredicted RBP5.53□□□□□ -1.52
HDDC3-204ENST00000559834 PRR4Q16378 134 aa5.53□□□□□ -1.52
HDDC3-204ENST00000559834 FAM104AQ969W3 186 aa5.53□□□□□ -1.52
HDDC3-204ENST00000559834 PACRGQ96M98 296 aaPredicted RBP5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 372.5 ms