RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 PRADC1Q9BSG0 188 aa5.31□□□□□ -1.56
CCDC88C-214ENST00000557507 UQCR10Q9UDW1 63 aa5.31□□□□□ -1.56
CCDC88C-214ENST00000557507 CYSLTR1Q9Y271 337 aa5.31□□□□□ -1.56
CCDC88C-214ENST00000557507 TRBV10-1A0A0K0K1A3 114 aa5.3□□□□□ -1.56
CCDC88C-214ENST00000557507 TRBV27A0A0K0K1C4 114 aa5.3□□□□□ -1.56
CCDC88C-214ENST00000557507 SDHAF1A6NFY7 115 aa5.3□□□□□ -1.56
CCDC88C-214ENST00000557507 H0Y8G0 127 aa5.3□□□□□ -1.56
CCDC88C-214ENST00000557507 M0QY20 66 aa5.3□□□□□ -1.56
CCDC88C-214ENST00000557507 PLNP26678 52 aa5.3□□□□□ -1.56
CCDC88C-214ENST00000557507 LBHQ53QV2 105 aaPredicted RBP5.3□□□□□ -1.56
CCDC88C-214ENST00000557507 LINC01545Q5VT33 79 aa5.3□□□□□ -1.56
CCDC88C-214ENST00000557507 ZNF664Q8N3J9 261 aa5.3□□□□□ -1.56
CCDC88C-214ENST00000557507 MIEN1Q9BRT3 115 aa5.3□□□□□ -1.56
CCDC88C-214ENST00000557507 PAM16Q9Y3D7 125 aa5.3□□□□□ -1.56
CCDC88C-214ENST00000557507 IGKV2D-24A0A075B6R9 120 aa5.29□□□□□ -1.56
CCDC88C-214ENST00000557507 NPSP0C0P6 89 aa5.29□□□□□ -1.56
CCDC88C-214ENST00000557507 ERASQ7Z444 233 aa5.29□□□□□ -1.56
CCDC88C-214ENST00000557507 Q8N976 141 aa5.29□□□□□ -1.56
CCDC88C-214ENST00000557507 TOMM6Q96B49 74 aa5.29□□□□□ -1.56
CCDC88C-214ENST00000557507 Q9UF83 564 aa5.29□□□□□ -1.56
CCDC88C-214ENST00000557507 TRAV12-1A0A0B4J245 112 aa5.28□□□□□ -1.56
CCDC88C-214ENST00000557507 GAGE12JA6NER3 117 aa5.28□□□□□ -1.56
CCDC88C-214ENST00000557507 DPM2O94777 84 aa5.28□□□□□ -1.56
CCDC88C-214ENST00000557507 POLR2KP53803 58 aaKnown RBP5.28□□□□□ -1.56
CCDC88C-214ENST00000557507 RPL36AP83881 106 aaKnown RBP5.28□□□□□ -1.56
CCDC88C-214ENST00000557507 GAGE1Q13065 139 aa5.28□□□□□ -1.56
CCDC88C-214ENST00000557507 GAGE4Q13068 117 aa5.28□□□□□ -1.56
CCDC88C-214ENST00000557507 GAGE5Q13069 117 aa5.28□□□□□ -1.56
CCDC88C-214ENST00000557507 GAGE13Q4V321 117 aa5.28□□□□□ -1.56
CCDC88C-214ENST00000557507 C2orf66Q6UXQ4 117 aa5.28□□□□□ -1.56
CCDC88C-214ENST00000557507 RPL36ALQ969Q0 106 aaKnown RBP5.28□□□□□ -1.56
CCDC88C-214ENST00000557507 RPL39LQ96EH5 51 aaKnown RBP5.28□□□□□ -1.56
CCDC88C-214ENST00000557507 PRO1933Q9H354 126 aa5.28□□□□□ -1.56
CCDC88C-214ENST00000557507 IGKCP01834 107 aa5.27□□□□□ -1.57
CCDC88C-214ENST00000557507 TMEM97Q5BJF2 176 aa5.27□□□□□ -1.57
CCDC88C-214ENST00000557507 RMI2Q96E14 147 aa5.27□□□□□ -1.57
CCDC88C-214ENST00000557507 TIMM17AQ99595 171 aa5.27□□□□□ -1.57
CCDC88C-214ENST00000557507 KLK12Q9UKR0 248 aa5.27□□□□□ -1.57
CCDC88C-214ENST00000557507 COX11Q9Y6N1 276 aa5.27□□□□□ -1.57
CCDC88C-214ENST00000557507 A0A087WX48 190 aa5.26□□□□□ -1.57
CCDC88C-214ENST00000557507 A0A096LNJ9 63 aa5.26□□□□□ -1.57
CCDC88C-214ENST00000557507 PANO1I0J062 215 aa5.26□□□□□ -1.57
CCDC88C-214ENST00000557507 M0R143 59 aa5.26□□□□□ -1.57
CCDC88C-214ENST00000557507 HERVK_113P61574 105 aa5.26□□□□□ -1.57
CCDC88C-214ENST00000557507 COTL1Q14019 142 aa5.26□□□□□ -1.57
CCDC88C-214ENST00000557507 SLC25A34Q6PIV7 304 aa5.26□□□□□ -1.57
CCDC88C-214ENST00000557507 UBE2WQ96B02 151 aa5.26□□□□□ -1.57
CCDC88C-214ENST00000557507 JPT2Q9H910 190 aa5.26□□□□□ -1.57
CCDC88C-214ENST00000557507 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.26□□□□□ -1.57
CCDC88C-214ENST00000557507 F8VRH5 84 aa5.25□□□□□ -1.57
CCDC88C-214ENST00000557507 GAS8-AS1O95177 125 aa5.25□□□□□ -1.57
CCDC88C-214ENST00000557507 IGLC3P0DOY3 106 aa5.25□□□□□ -1.57
CCDC88C-214ENST00000557507 ODF1Q14990 250 aa5.25□□□□□ -1.57
CCDC88C-214ENST00000557507 PMVKQ15126 192 aa5.25□□□□□ -1.57
CCDC88C-214ENST00000557507 UFSP1Q6NVU6 142 aa5.25□□□□□ -1.57
CCDC88C-214ENST00000557507 LINC00173Q6ZV60 143 aa5.25□□□□□ -1.57
CCDC88C-214ENST00000557507 ATOH7Q8N100 152 aa5.25□□□□□ -1.57
CCDC88C-214ENST00000557507 CHTOPQ9Y3Y2 248 aaKnown RBP5.25□□□□□ -1.57
CCDC88C-214ENST00000557507 TRBV7-3A0A075B6L6 115 aa5.24□□□□□ -1.57
CCDC88C-214ENST00000557507 LINC00587B1AMM8 73 aa5.24□□□□□ -1.57
CCDC88C-214ENST00000557507 DGAT2L7PQ6IED9 249 aa5.24□□□□□ -1.57
CCDC88C-214ENST00000557507 Q6ZRU5 148 aa5.24□□□□□ -1.57
CCDC88C-214ENST00000557507 C2orf88Q9BSF0 95 aa5.24□□□□□ -1.57
CCDC88C-214ENST00000557507 VCX2Q9H322 139 aa5.24□□□□□ -1.57
CCDC88C-214ENST00000557507 SPANXA1Q9NS26 97 aa5.24□□□□□ -1.57
CCDC88C-214ENST00000557507 PYGO1Q9Y3Y4 419 aa5.24□□□□□ -1.57
CCDC88C-214ENST00000557507 USP17L23D6RBM5 183 aa5.23□□□□□ -1.57
CCDC88C-214ENST00000557507 H7C423 109 aa5.23□□□□□ -1.57
CCDC88C-214ENST00000557507 DLEU1O43261 78 aa5.23□□□□□ -1.57
CCDC88C-214ENST00000557507 SEC11AP67812 179 aa5.23□□□□□ -1.57
CCDC88C-214ENST00000557507 C14orf177Q52M58 125 aa5.23□□□□□ -1.57
CCDC88C-214ENST00000557507 C20orf203Q8NBC4 194 aa5.23□□□□□ -1.57
CCDC88C-214ENST00000557507 NEXN-AS1Q8NBZ9 246 aa5.23□□□□□ -1.57
CCDC88C-214ENST00000557507 hDV102S1A0JD36 115 aa5.22□□□□□ -1.57
CCDC88C-214ENST00000557507 IGIPA6NJ69 53 aa5.22□□□□□ -1.57
CCDC88C-214ENST00000557507 UBE2L6O14933 153 aa5.22□□□□□ -1.57
CCDC88C-214ENST00000557507 TSHBP01222 138 aa5.22□□□□□ -1.57
CCDC88C-214ENST00000557507 COX8AP10176 69 aa5.22□□□□□ -1.57
CCDC88C-214ENST00000557507 TMEM101Q96IK0 257 aa5.22□□□□□ -1.57
CCDC88C-214ENST00000557507 TIMM21Q9BVV7 248 aa5.22□□□□□ -1.57
CCDC88C-214ENST00000557507 C1orf43Q9BWL3 253 aa5.22□□□□□ -1.57
CCDC88C-214ENST00000557507 NMUP48645 174 aa5.21□□□□□ -1.58
CCDC88C-214ENST00000557507 ZC2HC1BQ5TFG8 222 aa5.21□□□□□ -1.58
CCDC88C-214ENST00000557507 ENHOQ6UWT2 76 aa5.21□□□□□ -1.58
CCDC88C-214ENST00000557507 BOD1L2Q8IYS8 172 aa5.21□□□□□ -1.58
CCDC88C-214ENST00000557507 C9orf163Q8N9P6 203 aa5.21□□□□□ -1.58
CCDC88C-214ENST00000557507 C14orf144Q96I85 54 aa5.21□□□□□ -1.58
CCDC88C-214ENST00000557507 CHCHD7Q9BUK0 85 aa5.21□□□□□ -1.58
CCDC88C-214ENST00000557507 CST9LQ9H4G1 147 aa5.21□□□□□ -1.58
CCDC88C-214ENST00000557507 MRPL35Q9NZE8 188 aaKnown RBP5.21□□□□□ -1.58
CCDC88C-214ENST00000557507 TRBV25-1A0A075B6N4 114 aa5.2□□□□□ -1.58
CCDC88C-214ENST00000557507 MPV17L2Q567V2 206 aa5.2□□□□□ -1.58
CCDC88C-214ENST00000557507 AMMECR1LQ6DCA0 310 aa5.2□□□□□ -1.58
CCDC88C-214ENST00000557507 CSDC2Q9Y534 153 aaKnown RBP5.2□□□□□ -1.58
CCDC88C-214ENST00000557507 C11orf86A6NJI1 115 aa5.19□□□□□ -1.58
CCDC88C-214ENST00000557507 H3BRM9 83 aa5.19□□□□□ -1.58
CCDC88C-214ENST00000557507 CRPP02741 224 aa5.19□□□□□ -1.58
CCDC88C-214ENST00000557507 ZNF25P17030 456 aaPredicted RBP5.19□□□□□ -1.58
CCDC88C-214ENST00000557507 UBE2D3P61077 147 aa5.19□□□□□ -1.58
CCDC88C-214ENST00000557507 UBE2D2P62837 147 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms