RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 C2orf48Q96LS8 159 aa8.72□□□□□ -1.01
SNHG1-213ENST00000540725 TIMM21Q9BVV7 248 aa8.72□□□□□ -1.01
SNHG1-213ENST00000540725 NAT8BQ9UHF3 227 aa8.72□□□□□ -1.01
SNHG1-213ENST00000540725 COLCA2A8K830 154 aa8.71□□□□□ -1.02
SNHG1-213ENST00000540725 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.71□□□□□ -1.02
SNHG1-213ENST00000540725 MRPL51Q4U2R6 128 aaKnown RBP8.71□□□□□ -1.02
SNHG1-213ENST00000540725 FAM104BQ5XKR9 115 aa8.71□□□□□ -1.02
SNHG1-213ENST00000540725 TMEM18Q96B42 140 aa8.71□□□□□ -1.02
SNHG1-213ENST00000540725 RPL23P62829 140 aaKnown RBP8.7□□□□□ -1.02
SNHG1-213ENST00000540725 RPL18AQ02543 176 aaKnown RBP8.7□□□□□ -1.02
SNHG1-213ENST00000540725 SPAG11BQ08648 103 aa8.7□□□□□ -1.02
SNHG1-213ENST00000540725 TMEM241Q24JQ0 296 aa8.7□□□□□ -1.02
SNHG1-213ENST00000540725 C9orf116Q5BN46 136 aaPredicted RBP8.7□□□□□ -1.02
SNHG1-213ENST00000540725 CBLN2Q8IUK8 224 aa8.7□□□□□ -1.02
SNHG1-213ENST00000540725 MT-ND4LP03901 98 aa8.69□□□□□ -1.02
SNHG1-213ENST00000540725 ADIRFQ15847 76 aa8.69□□□□□ -1.02
SNHG1-213ENST00000540725 C20orf78Q9BR46 151 aa8.69□□□□□ -1.02
SNHG1-213ENST00000540725 PSORS1C2Q9UIG4 136 aa8.69□□□□□ -1.02
SNHG1-213ENST00000540725 TRBV24-1A0A075B6N3 115 aa8.68□□□□□ -1.02
SNHG1-213ENST00000540725 MT-ND6P03923 174 aa8.68□□□□□ -1.02
SNHG1-213ENST00000540725 RPL39P62891 51 aaKnown RBP8.68□□□□□ -1.02
SNHG1-213ENST00000540725 RPL32P62910 135 aaKnown RBP8.68□□□□□ -1.02
SNHG1-213ENST00000540725 PNRC1Q12796 327 aaPredicted RBP8.68□□□□□ -1.02
SNHG1-213ENST00000540725 RNF151Q2KHN1 245 aa8.68□□□□□ -1.02
SNHG1-213ENST00000540725 OR10D4PQ8NGN7 298 aa8.68□□□□□ -1.02
SNHG1-213ENST00000540725 OPRPNQ99935 248 aaPredicted RBP8.68□□□□□ -1.02
SNHG1-213ENST00000540725 RPS10P5Q9NQ39 176 aa8.68□□□□□ -1.02
SNHG1-213ENST00000540725 SMIM27A0A1W2PRY6 76 aa8.67□□□□□ -1.02
SNHG1-213ENST00000540725 TCAPO15273 167 aa8.67□□□□□ -1.02
SNHG1-213ENST00000540725 CKS2P33552 79 aa8.67□□□□□ -1.02
SNHG1-213ENST00000540725 A0A1B0GW15 77 aa8.66□□□□□ -1.02
SNHG1-213ENST00000540725 TNFRSF6BO95407 300 aa8.66□□□□□ -1.02
SNHG1-213ENST00000540725 PHF5AQ7RTV0 110 aaKnown RBP8.66□□□□□ -1.02
SNHG1-213ENST00000540725 ORAOV1Q8WV07 137 aa8.66□□□□□ -1.02
SNHG1-213ENST00000540725 FAM104AQ969W3 186 aa8.66□□□□□ -1.02
SNHG1-213ENST00000540725 SMIM2Q9BVW6 85 aa8.66□□□□□ -1.02
SNHG1-213ENST00000540725 NAT8Q9UHE5 227 aa8.66□□□□□ -1.02
SNHG1-213ENST00000540725 C1orf137Q5JT78 98 aa8.65□□□□□ -1.02
SNHG1-213ENST00000540725 SPANXA1Q9NS26 97 aa8.65□□□□□ -1.02
SNHG1-213ENST00000540725 MRPL35Q9NZE8 188 aaKnown RBP8.65□□□□□ -1.02
SNHG1-213ENST00000540725 IGHV3OR16-9A0A0B4J2B5 98 aa8.64□□□□□ -1.03
SNHG1-213ENST00000540725 D6R8Y8 96 aa8.64□□□□□ -1.03
SNHG1-213ENST00000540725 RAB5BP61020 215 aa8.64□□□□□ -1.03
SNHG1-213ENST00000540725 YPEL4Q96NS1 127 aa8.64□□□□□ -1.03
SNHG1-213ENST00000540725 IFITM10A6NMD0 228 aa8.63□□□□□ -1.03
SNHG1-213ENST00000540725 F8WDY8 70 aa8.63□□□□□ -1.03
SNHG1-213ENST00000540725 NDUFA1O15239 70 aa8.63□□□□□ -1.03
SNHG1-213ENST00000540725 NPYP01303 97 aa8.63□□□□□ -1.03
SNHG1-213ENST00000540725 MRPS36P82909 103 aaKnown RBP8.63□□□□□ -1.03
SNHG1-213ENST00000540725 MRPL54Q6P161 138 aaKnown RBP8.63□□□□□ -1.03
SNHG1-213ENST00000540725 IMMP2LQ96T52 175 aa8.63□□□□□ -1.03
SNHG1-213ENST00000540725 S100A8P05109 93 aa8.62□□□□□ -1.03
SNHG1-213ENST00000540725 HBBP68871 147 aa8.62□□□□□ -1.03
SNHG1-213ENST00000540725 C10orf25Q5T742 122 aa8.62□□□□□ -1.03
SNHG1-213ENST00000540725 CTDSP1Q9GZU7 261 aa8.62□□□□□ -1.03
SNHG1-213ENST00000540725 A0A1B0GXF2 115 aa8.61□□□□□ -1.03
SNHG1-213ENST00000540725 RAB5AP20339 215 aa8.61□□□□□ -1.03
SNHG1-213ENST00000540725 UNQ6190/PRO20217Q6UXQ8 127 aa8.61□□□□□ -1.03
SNHG1-213ENST00000540725 FAM168BA1KXE4 195 aa8.61□□□□□ -1.03
SNHG1-213ENST00000540725 IGLV7-43P04211 117 aa8.61□□□□□ -1.03
SNHG1-213ENST00000540725 TLX1NBP0CAT3 122 aa8.61□□□□□ -1.03
SNHG1-213ENST00000540725 C6orf48Q9UBA6 75 aa8.61□□□□□ -1.03
SNHG1-213ENST00000540725 A0A087WZ39 114 aa8.6□□□□□ -1.03
SNHG1-213ENST00000540725 TGIF2-C20orf24A0A0A6YYL0 155 aa8.6□□□□□ -1.03
SNHG1-213ENST00000540725 PPBPP02775 128 aa8.6□□□□□ -1.03
SNHG1-213ENST00000540725 DIRC1Q969H9 104 aa8.6□□□□□ -1.03
SNHG1-213ENST00000540725 FAM19A5Q7Z5A7 132 aaPredicted RBP8.59□□□□□ -1.03
SNHG1-213ENST00000540725 KRTAP11-1Q8IUC1 163 aa8.59□□□□□ -1.03
SNHG1-213ENST00000540725 LPAP08519 4548 aa8.58□□□□□ -1.04
SNHG1-213ENST00000540725 C5orf52A6NGY3 159 aa8.58□□□□□ -1.04
SNHG1-213ENST00000540725 IFI27P40305 119 aaPredicted RBP8.58□□□□□ -1.04
SNHG1-213ENST00000540725 KIAA0087Q14695 138 aa8.58□□□□□ -1.04
SNHG1-213ENST00000540725 GAGE2EQ4V326 116 aa8.58□□□□□ -1.04
SNHG1-213ENST00000540725 ORMDL3Q8N138 153 aa8.58□□□□□ -1.04
SNHG1-213ENST00000540725 PRR26Q8N8Z3 221 aa8.58□□□□□ -1.04
SNHG1-213ENST00000540725 GAGE2DQ9UEU5 116 aa8.58□□□□□ -1.04
SNHG1-213ENST00000540725 H0Y9J4 135 aa8.57□□□□□ -1.04
SNHG1-213ENST00000540725 LINC00242Q5T6M2 205 aa8.57□□□□□ -1.04
SNHG1-213ENST00000540725 TMEM136Q6ZRR5 245 aa8.57□□□□□ -1.04
SNHG1-213ENST00000540725 LINC00518Q8N0U6 118 aa8.57□□□□□ -1.04
SNHG1-213ENST00000540725 PRELID3AQ96N28 172 aa8.57□□□□□ -1.04
SNHG1-213ENST00000540725 PYGO1Q9Y3Y4 419 aa8.57□□□□□ -1.04
SNHG1-213ENST00000540725 IGLV4-3A0A075B6K6 122 aa8.56□□□□□ -1.04
SNHG1-213ENST00000540725 ATP5L2Q7Z4Y8 100 aa8.56□□□□□ -1.04
SNHG1-213ENST00000540725 KRTAP7-1Q8IUC3 87 aa8.56□□□□□ -1.04
SNHG1-213ENST00000540725 ANAPC16Q96DE5 110 aa8.56□□□□□ -1.04
SNHG1-213ENST00000540725 TMEM141Q96I45 108 aa8.56□□□□□ -1.04
SNHG1-213ENST00000540725 TRBV30A0A0K0K1B3 111 aa8.55□□□□□ -1.04
SNHG1-213ENST00000540725 M0QXV9 152 aa8.55□□□□□ -1.04
SNHG1-213ENST00000540725 S100A6P06703 90 aa8.55□□□□□ -1.04
SNHG1-213ENST00000540725 UBE2BP63146 152 aa8.54□□□□□ -1.04
SNHG1-213ENST00000540725 C2orf82Q6UX34 121 aa8.54□□□□□ -1.04
SNHG1-213ENST00000540725 NDUFC2-KCTD14E9PQ53 114 aa8.53□□□□□ -1.04
SNHG1-213ENST00000540725 TEX43Q6ZNM6 134 aa8.53□□□□□ -1.04
SNHG1-213ENST00000540725 LOC389332A0A1B0GUA5 103 aa8.52□□□□□ -1.05
SNHG1-213ENST00000540725 PRSS47A8MTI9 375 aa8.52□□□□□ -1.05
SNHG1-213ENST00000540725 UBE2D1P51668 147 aa8.52□□□□□ -1.05
SNHG1-213ENST00000540725 SNRPEP62304 92 aaKnown RBP8.52□□□□□ -1.05
SNHG1-213ENST00000540725 PACRGQ96M98 296 aaPredicted RBP8.52□□□□□ -1.05
SNHG1-213ENST00000540725 IGLV1-50A0A075B6I6 118 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms