RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 OPRPNQ99935 248 aaPredicted RBP8.38□□□□□ -1.07
VPS28-211ENST00000530790 LOC389332A0A1B0GUA5 103 aa8.37□□□□□ -1.07
VPS28-211ENST00000530790 PTTG1IPP53801 180 aa8.37□□□□□ -1.07
VPS28-211ENST00000530790 FAM104AQ969W3 186 aa8.37□□□□□ -1.07
VPS28-211ENST00000530790 C2orf48Q96LS8 159 aa8.37□□□□□ -1.07
VPS28-211ENST00000530790 LRP1Q07954 4544 aaKnown RBP8.37□□□□□ -1.07
VPS28-211ENST00000530790 PKHD1L1Q86WI1 4243 aa8.37□□□□□ -1.07
VPS28-211ENST00000530790 TGIF2-C20orf24A0A0A6YYL0 155 aa8.36□□□□□ -1.07
VPS28-211ENST00000530790 PRSS47A8MTI9 375 aa8.36□□□□□ -1.07
VPS28-211ENST00000530790 GAGE2BQ13066 116 aa8.36□□□□□ -1.07
VPS28-211ENST00000530790 UQCC3Q6UW78 93 aa8.36□□□□□ -1.07
VPS28-211ENST00000530790 ORAOV1Q8WV07 137 aa8.36□□□□□ -1.07
VPS28-211ENST00000530790 PYGO1Q9Y3Y4 419 aa8.36□□□□□ -1.07
VPS28-211ENST00000530790 IGLV4-3A0A075B6K6 122 aa8.35□□□□□ -1.07
VPS28-211ENST00000530790 IGHV3OR16-9A0A0B4J2B5 98 aa8.35□□□□□ -1.07
VPS28-211ENST00000530790 PRR3P79522 188 aaKnown RBP8.35□□□□□ -1.07
VPS28-211ENST00000530790 RPL18AQ02543 176 aaKnown RBP8.35□□□□□ -1.07
VPS28-211ENST00000530790 Q8N8P6 123 aa8.35□□□□□ -1.07
VPS28-211ENST00000530790 TMEM141Q96I45 108 aa8.35□□□□□ -1.07
VPS28-211ENST00000530790 CTDSP1Q9GZU7 261 aa8.35□□□□□ -1.07
VPS28-211ENST00000530790 ADCYAP1P18509 176 aa8.34□□□□□ -1.07
VPS28-211ENST00000530790 IMMP2LQ96T52 175 aa8.34□□□□□ -1.07
VPS28-211ENST00000530790 CYSLTR1Q9Y271 337 aa8.34□□□□□ -1.07
VPS28-211ENST00000530790 F8WDY8 70 aa8.33□□□□□ -1.08
VPS28-211ENST00000530790 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.33□□□□□ -1.08
VPS28-211ENST00000530790 NDUFA1O15239 70 aa8.33□□□□□ -1.08
VPS28-211ENST00000530790 ORMDL2Q53FV1 153 aa8.33□□□□□ -1.08
VPS28-211ENST00000530790 SERTAD4-AS1Q5TG53 156 aa8.33□□□□□ -1.08
VPS28-211ENST00000530790 Q6ZN92 141 aa8.33□□□□□ -1.08
VPS28-211ENST00000530790 TEX43Q6ZNM6 134 aa8.33□□□□□ -1.08
VPS28-211ENST00000530790 FAT3Q8TDW7 4589 aa8.33□□□□□ -1.08
VPS28-211ENST00000530790 C2orf88Q9BSF0 95 aa8.33□□□□□ -1.08
VPS28-211ENST00000530790 TMEM218A2RU14 115 aa8.32□□□□□ -1.08
VPS28-211ENST00000530790 K7EMI3 77 aa8.32□□□□□ -1.08
VPS28-211ENST00000530790 RNF151Q2KHN1 245 aa8.32□□□□□ -1.08
VPS28-211ENST00000530790 C2orf66Q6UXQ4 117 aa8.32□□□□□ -1.08
VPS28-211ENST00000530790 NXT2Q9NPJ8 142 aaKnown RBP8.32□□□□□ -1.08
VPS28-211ENST00000530790 MRPL35Q9NZE8 188 aaKnown RBP8.32□□□□□ -1.08
VPS28-211ENST00000530790 A0A087WZ39 114 aa8.31□□□□□ -1.08
VPS28-211ENST00000530790 A0A0J9YXV3 536 aa8.31□□□□□ -1.08
VPS28-211ENST00000530790 LINC00242Q5T6M2 205 aa8.31□□□□□ -1.08
VPS28-211ENST00000530790 TRAV9-1A0A075B6T8 112 aa8.3□□□□□ -1.08
VPS28-211ENST00000530790 Q6ZRP5 223 aa8.3□□□□□ -1.08
VPS28-211ENST00000530790 NPSP0C0P6 89 aa8.29□□□□□ -1.08
VPS28-211ENST00000530790 S100PP25815 95 aa8.29□□□□□ -1.08
VPS28-211ENST00000530790 UBE2D1P51668 147 aa8.29□□□□□ -1.08
VPS28-211ENST00000530790 SEC11CQ9BY50 192 aa8.29□□□□□ -1.08
VPS28-211ENST00000530790 A0A1W2PNN7 141 aa8.28□□□□□ -1.08
VPS28-211ENST00000530790 MT1HL1P0DM35 61 aa8.28□□□□□ -1.08
VPS28-211ENST00000530790 G0S2P27469 103 aa8.28□□□□□ -1.08
VPS28-211ENST00000530790 C9orf116Q5BN46 136 aaPredicted RBP8.28□□□□□ -1.08
VPS28-211ENST00000530790 LINC00173Q6ZV60 143 aa8.28□□□□□ -1.08
VPS28-211ENST00000530790 COMMD7Q86VX2 200 aa8.28□□□□□ -1.08
VPS28-211ENST00000530790 VCX2Q9H322 139 aa8.28□□□□□ -1.08
VPS28-211ENST00000530790 IGIPA6NJ69 53 aa8.27□□□□□ -1.09
VPS28-211ENST00000530790 KIAA1644Q3SXP7 199 aa8.27□□□□□ -1.09
VPS28-211ENST00000530790 PAPPA-AS1Q5QFB9 102 aa8.27□□□□□ -1.09
VPS28-211ENST00000530790 C10orf25Q5T742 122 aa8.27□□□□□ -1.09
VPS28-211ENST00000530790 UNQ6190/PRO20217Q6UXQ8 127 aa8.27□□□□□ -1.09
VPS28-211ENST00000530790 AMELXQ99217 191 aa8.27□□□□□ -1.09
VPS28-211ENST00000530790 C6orf48Q9UBA6 75 aa8.27□□□□□ -1.09
VPS28-211ENST00000530790 TLX1NBP0CAT3 122 aa8.26□□□□□ -1.09
VPS28-211ENST00000530790 KIAA0087Q14695 138 aa8.26□□□□□ -1.09
VPS28-211ENST00000530790 ZC2HC1BQ5TFG8 222 aa8.26□□□□□ -1.09
VPS28-211ENST00000530790 SPINK6Q6UWN8 80 aa8.26□□□□□ -1.09
VPS28-211ENST00000530790 LINC01561Q8N1V8 128 aa8.26□□□□□ -1.09
VPS28-211ENST00000530790 PLA2G2DQ9UNK4 145 aa8.26□□□□□ -1.09
VPS28-211ENST00000530790 TRBV30A0A0K0K1B3 111 aa8.25□□□□□ -1.09
VPS28-211ENST00000530790 TOMM6Q96B49 74 aa8.25□□□□□ -1.09
VPS28-211ENST00000530790 PACRGQ96M98 296 aaPredicted RBP8.25□□□□□ -1.09
VPS28-211ENST00000530790 TIMM17AQ99595 171 aa8.25□□□□□ -1.09
VPS28-211ENST00000530790 GNB1LQ9BYB4 327 aa8.25□□□□□ -1.09
VPS28-211ENST00000530790 MT-ND6P03923 174 aa8.24□□□□□ -1.09
VPS28-211ENST00000530790 PRSS2P07478 247 aa8.24□□□□□ -1.09
VPS28-211ENST00000530790 SEC11AP67812 179 aa8.24□□□□□ -1.09
VPS28-211ENST00000530790 COX19Q49B96 90 aa8.24□□□□□ -1.09
VPS28-211ENST00000530790 REG3GQ6UW15 175 aa8.24□□□□□ -1.09
VPS28-211ENST00000530790 PHF5AQ7RTV0 110 aaKnown RBP8.24□□□□□ -1.09
VPS28-211ENST00000530790 HMCN2Q8NDA2 5059 aa8.24□□□□□ -1.09
VPS28-211ENST00000530790 HERVK_113P63121 156 aa8.23□□□□□ -1.09
VPS28-211ENST00000530790 RHEBQ15382 184 aa8.23□□□□□ -1.09
VPS28-211ENST00000530790 GAGE2EQ4V326 116 aa8.23□□□□□ -1.09
VPS28-211ENST00000530790 C2orf82Q6UX34 121 aa8.23□□□□□ -1.09
VPS28-211ENST00000530790 FAM19A3Q7Z5A8 133 aa8.23□□□□□ -1.09
VPS28-211ENST00000530790 SLC7A5P1Q8MH63 180 aa8.23□□□□□ -1.09
VPS28-211ENST00000530790 LINC01600Q96MT4 127 aa8.23□□□□□ -1.09
VPS28-211ENST00000530790 GEMIN7Q9H840 131 aaKnown RBP8.23□□□□□ -1.09
VPS28-211ENST00000530790 TOMM7Q9P0U1 55 aa8.23□□□□□ -1.09
VPS28-211ENST00000530790 GAGE2DQ9UEU5 116 aa8.23□□□□□ -1.09
VPS28-211ENST00000530790 CKS1BP61024 79 aa8.22□□□□□ -1.09
VPS28-211ENST00000530790 ERASQ7Z444 233 aa8.22□□□□□ -1.09
VPS28-211ENST00000530790 FAM19A5Q7Z5A7 132 aaPredicted RBP8.22□□□□□ -1.09
VPS28-211ENST00000530790 SCGB3A1Q96QR1 104 aa8.22□□□□□ -1.09
VPS28-211ENST00000530790 ALKBH7Q9BT30 221 aaPredicted RBP8.22□□□□□ -1.09
VPS28-211ENST00000530790 RPS10P5Q9NQ39 176 aa8.22□□□□□ -1.09
VPS28-211ENST00000530790 PSORS1C2Q9UIG4 136 aa8.22□□□□□ -1.09
VPS28-211ENST00000530790 CARHSP1Q9Y2V2 147 aaKnown RBP8.22□□□□□ -1.09
VPS28-211ENST00000530790 FAM168BA1KXE4 195 aa8.21□□□□□ -1.1
VPS28-211ENST00000530790 LINC01549A6NIU2 74 aa8.21□□□□□ -1.1
VPS28-211ENST00000530790 NDUFC2-KCTD14E9PQ53 114 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms